TCONS_00020087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020087
Unique NameTCONS_00020087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020087 ID=TCONS_00020087|Name=TCONS_00020087|organism=Clytia hemisphaerica|type=transcript|length=1212bp
GTAATTGGTAAAATATATCAAATGAAGGAACCAAACAGCAAAACTAGAAG
AAGGCAAAATAAAATACTAACACTATCCAgacttttctttaaaataaaat
tatttttcaaaaagaatacGTAGACAAATAACaaactaaaagaaaattaa
atacaATCTGTAAATTATTTTAATAGAGAGGAATATCAGTAGGGGGTATT
AGGGCGGCCCCTGGCATTCTGTTTTCCTCTAGTAGAAAATTGAATGTAGA
ACATGCATTAGGTGTATCTAGGACCTCCAGAGCAATATTATGTCGCCTCA
TATAATCCCGAACTTCCTGAGAAAGTCGTTCAATCTTAAGTCCAGTACCA
ATaactaaaatttcaattttaggttCAGCAACAGTGAATAATTGTAACGA
TTTCACAGTAATGTCTGAAGCATCCTTCACTTTCCAAGAGTAAAAGGATC
TGGGCAACAATGCAACTGGTCCATAAAGTTTATTTCCTTGAATGTGAAAA
CCTTGGGTACTATATCTCCCAACAACAGGCGGAAGATCGGTTGCAGACAT
GCTTTCTGGTGCGAATTTTTGTATCTTCATCGTGGTGGGTTCAACCATAA
AAGTCCCTTTGTTTTGTTTATCAGCTGCTTGTTGTTGCAAAGATGTACAC
AATAACCTTGTTCCTctcatttttttgtgaaatgacATCTGTTTTGACCC
TCTTATGATATGTTGGCCGAATAAGgccatttttttaatctttttctaTG
GAAGGAAACTACAATACATTCGGCAACTTGATTCAATATTATATTATCAA
AGTCTTCCTATACTCTATCTAACCTCAACCACCTAACCTATAAACGAGAA
TAGGCTAAGGTAACTCCATTATCATTATACATTATTTCAAAcattaagaa
aaaataagattCGTATATCAGCCTTATCTTATAGAAAATGTTTATGTGCT
TATGAAACCgacaaaaaccttgaaaaggtATGAAAACCTCAGCTAAAGAA
TAGAAGAATACCTCTGAGAAGGATCTGAGATCTAAATATGATAAATACAG
TTTCAATGGAGTCTCATTGACACAACTAAAAGATCAACATGGCACTTGAA
AGAAGCAACCACTTTGAATATCAACTTTTTATTCCTCACCGTCAATTCTG
GGTATTTGAATATGTTTAAGTGGACCCCGAGTTACGTAATAATATAAAGc
cacagaaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00020087-protein

>TCONS_00020087-protein ID=TCONS_00020087-protein|Name=TCONS_00020087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MALFGQHIIRGSKQMSFHKKMRGTRLLCTSLQQQAADKQNKGTFMVEPTT
MKIQKFAPESMSATDLPPVVGRYSTQGFHIQGNKLYGPVALLPRSFYSWK
VKDASDITVKSLQLFTVAEPKIEILVIGTGLKIERLSQEVRDYMRRHNIA
LEVLDTPNACSTFNFLLEENRMPGAALIPPTDIPLY
Run BLAST on NCBI

transcript from alignment at sc0000348:167745..168956

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020087 ID=TCONS_00020087|Name=TCONS_00020087|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at sc0000348:167745..168956 (Clytia hemisphaerica)
tttttttctgtggCTTTATATTATTACGTAACTCGGGGTCCACTTAAACA
TATTCAAATACCCAGAATTGACGGTGAGGAATAAAAAGTTGATATTCAAA
GTGGTTGCTTCTTTCAAGTGCCATGTTGATCTTTTAGTTGTGTCAATGAG
ACTCCATTGAAACTGTATTTATCATATTTAGATCTCAGATCCTTCTCAGA
GGTATTCTTCTATTCTTTAGCTGAGGTTTTCATaccttttcaaggttttt
gtcGGTTTCATAAGCACATAAACATTTTCTATAAGATAAGGCTGATATAC
GaatcttattttttcttaatgTTTGAAATAATGTATAATGATAATGGAGT
TACCTTAGCCTATTCTCGTTTATAGGTTAGGTGGTTGAGGTTAGATAGAG
TATAGGAAGACTTTGATAATATAATATTGAATCAAGTTGCCGAATGTATT
GTAGTTTCCTTCCAtagaaaaagattaaaaaaatggcCTTATTCGGCCAA
CATATCATAAGAGGGTCAAAACAGATgtcatttcacaaaaaaatgagAGG
AACAAGGTTATTGTGTACATCTTTGCAACAACAAGCAGCTGATAAACAAA
ACAAAGGGACTTTTATGGTTGAACCCACCACGATGAAGATACAAAAATTC
GCACCAGAAAGCATGTCTGCAACCGATCTTCCGCCTGTTGTTGGGAGATA
TAGTACCCAAGGTTTTCACATTCAAGGAAATAAACTTTATGGACCAGTTG
CATTGTTGCCCAGATCCTTTTACTCTTGGAAAGTGAAGGATGCTTCAGAC
ATTACTGTGAAATCGTTACAATTATTCACTGTTGCTGaacctaaaattga
aattttagttATTGGTACTGGACTTAAGATTGAACGACTTTCTCAGGAAG
TTCGGGATTATATGAGGCGACATAATATTGCTCTGGAGGTCCTAGATACA
CCTAATGCATGTTCTACATTCAATTTTCTACTAGAGGAAAACAGAATGCC
AGGGGCCGCCCTAATACCCCCTACTGATATTCCTCTCTATTAAAATAATT
TACAGATtgtatttaattttcttttagtttGTTATTTGTCTACgtattct
ttttgaaaaataattttattttaaagaaaagtcTGGATAGTGTTAGTATT
TTATTTTGCCTTCTTCTAGTTTTGCTGTTTGGTTCCTTCATTTGATATAT
TTTACCAATTAC

Coding sequence (CDS) from alignment at sc0000348:167745..168956

>TCONS_00020087 ID=TCONS_00020087|Name=TCONS_00020087|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000348:167745..168956 (Clytia hemisphaerica)
atggcCTTATTCGGCCAACATATCATAAGAGGGTCAAAACAGATgtcatt
tcacaaaaaaatgagAGGAACAAGGTTATTGTGTACATCTTTGCAACAAC
AAGCAGCTGATAAACAAAACAAAGGGACTTTTATGGTTGAACCCACCACG
ATGAAGATACAAAAATTCGCACCAGAAAGCATGTCTGCAACCGATCTTCC
GCCTGTTGTTGGGAGATATAGTACCCAAGGTTTTCACATTCAAGGAAATA
AACTTTATGGACCAGTTGCATTGTTGCCCAGATCCTTTTACTCTTGGAAA
GTGAAGGATGCTTCAGACATTACTGTGAAATCGTTACAATTATTCACTGT
TGCTGaacctaaaattgaaattttagttATTGGTACTGGACTTAAGATTG
AACGACTTTCTCAGGAAGTTCGGGATTATATGAGGCGACATAATATTGCT
CTGGAGGTCCTAGATACACCTAATGCATGTTCTACATTCAATTTTCTACT
AGAGGAAAACAGAATGCCAGGGGCCGCCCTAATACCCCCTACTGATATTC
CTCTCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011291XLOC_011291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020087-proteinTCONS_00020087-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020087-exon-sc0000348-1491911889:167745..168956TCONS_00020087-exon-sc0000348-1491911889:167745..168956Clytia hemisphaericaexon
TCONS_00020087-exon-sc0000348-1510915933:167745..168956TCONS_00020087-exon-sc0000348-1510915933:167745..168956Clytia hemisphaericaexon
TCONS_00020087-exon-sc0000348-1575043694:167745..168956TCONS_00020087-exon-sc0000348-1575043694:167745..168956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:167745..168956 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.2996	68.296	50.4625	47.9199	13.4516	11.6473	11.0961	11.6227	12.042	9.56248	6.91639	6.76095	4.37557	4.5685	7.53194	7.37163	22.1189	18.2077	3.60968	3.93466	9.6784	9.70847	48.3838	38.1253	9.49424	9.11736	7.61474	6.21146	21.9855	24.2797
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007523NDUFAF3/AAMDC
IPR034095NDUF3
Vocabulary: Biological Process
TermDefinition
GO:0032981mitochondrial respiratory chain complex I assembly
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
Blast
[Close]
BLAST of TCONS_00020087 vs. Swiss-Prot (Human)
Match: NDUF3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.231e-35
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = -3 
Query:  191 VGRYSTQGFHIQGNKLYGPVALLPRSFYSWKVKDASDITVKSLQLFTVAEPKIEILVIGTGLKIERLSQEVRDYMRRHNIALEVLDTPNACSTFNFLLEENRMPGAALIPP 523
            +  Y+++GF I GN++ GP ALLP S   W V    DIT  S  LF + EP+IEI+V+GTG + ERL  +V   MR+  IA+EV DTPNAC+TFNFL  E R+ GAALIPP
Sbjct:   60 IDSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 170
The following BLAST results are available for this feature:
BLAST of TCONS_00020087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUF34.231e-3554.05NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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