TCONS_00020083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020083
Unique NameTCONS_00020083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020083 ID=TCONS_00020083|Name=TCONS_00020083|organism=Clytia hemisphaerica|type=transcript|length=226bp
ATGAAATCggttaaatattttcaacatgATATGATATAATGAATTGAGTa
gatataaatatttcaaatcgaAAAAAGATCTCTATATATACAACAAAGTG
CCACGAGGCAAAGGAAGCTTTTTTACCATAAAATGATTGAGAATTCATCT
TTgggaaacttttttgtttcagctTGAAAAAATGATTCAATATCGACAAA
AAAGATGCAAATACACCAcaaatact
Run BLAST on NCBI

transcript from alignment at sc0000348:108511..108736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020083 ID=TCONS_00020083|Name=TCONS_00020083|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at sc0000348:108511..108736 (Clytia hemisphaerica)
agtatttgTGGTGTATTTGCATCTTTTTTGTCGATATTGAATCATTTTTT
CAagctgaaacaaaaaagtttcccAAAGATGAATTCTCAATCATTTTATG
GTAAAAAAGCTTCCTTTGCCTCGTGGCACTTTGTTGTATATATAGAGATC
TTTTTtcgatttgaaatatttatatctACTCAATTCATTATATCATATca
tgttgaaaatatttaaccGATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011287XLOC_011287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020083-exon-sc0000348-1491911889:108511..108736TCONS_00020083-exon-sc0000348-1491911889:108511..108736Clytia hemisphaericaexon
TCONS_00020083-exon-sc0000348-1510915933:108511..108736TCONS_00020083-exon-sc0000348-1510915933:108511..108736Clytia hemisphaericaexon
TCONS_00020083-exon-sc0000348-1575043694:108511..108736TCONS_00020083-exon-sc0000348-1575043694:108511..108736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:108511..108736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37727	0	7.64783	3.74111	0	1.19966	0	0	1.89731	1.17506	0	0	0	0.777538	1.91772	0.686004	0	0	3.59011	0	2.17689	0	0	1.1735	0	0	3.08727	8.23705	7.49701	5.09218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top