TCONS_00020044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020044
Unique NameTCONS_00020044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020044 ID=TCONS_00020044|Name=TCONS_00020044|organism=Clytia hemisphaerica|type=transcript|length=1255bp
TGTAACCATATACATACCTTAATGTACCTTTTCTTTTCAGATATAATAAC
TAAGAAATAAAACTAAATGGAAAATGCCGATTGTTGGGACCTGCACAGAA
ATGTGCCCACATGAAGAACACGTGATGAGATCGAGAACAAAAAGGTTGCA
TTTCATTGAACGCCATTCCCAACAGAGTGTGAAAGAATACGCCCGATGCG
CCGCAGGGTCCACTCGTTCGCCGAAAGAACTGCGAACGCCTGATGCTTTG
GTCAAAACAACTCATTTCTTAGTTTCCCTGCTCAACTTTGAACACCATGA
CAACAATCTCTTAGCAACCACCAATTTCATCACCGACAGATTACGAGCTG
TTCGTCAAGACATCATTATACAGCAATTACCACCACACTTCGGTATCTCA
ATCATCCAGCAGATCGTTCGATACCACATCCTGGTGCAATACCTTCTTCA
CCAACAACCTCCAACATCTTTCGATCCAGTGCTCAACGATCAACTTCTTC
GCTCCTATCTCTCAGATCTGATGGAATATTACCAGCTTTTACCAATAGAG
GAGAATCTCAAACATCAAGTTGACGAGTTCAAGTCGTATCAACTATTGTT
AAATATTCATGACCAAGCTTTCATCCAACGTCTGTTGAttgacttttttg
aagaaaGCAGCTCTGTATTAAGGCTAAAGGAACCCTCTTGTAGATTTCAG
ACTGTTTTCTCTTTATACTTGAGCTGGTCTTCTGGTAATTTCTACAGATT
CTTCAAGAAATGTCATGGATTAAGTTTCCTTGAGAGTTGTTGTCTGCTGG
AGCACTTTACAACCATTCGCGTCCATTTTCTGGATGTTTTGAGTGCTGGA
TTCCAAAgtaaacatttcaaattcaacTTAGAGAAAATGCAAGACTGGTT
TTGTTTTGACAACGAAAAGGATCTTTAcgaatttttgaaacatttcaatC
TACCATTTGACGAAAACAATAAGCAGGTGAATTTTCAACAGAAGAAAACT
TTTCAGTTGGAATCAAGGTCTGACAGATTTGATTTAATAAGGAAATGTAC
TTATATAAAGTTGATAGAAAATTCTAGAGAGTTGGAATCGAAAAATTATA
CTCAAGTCATTTTACCGACTTaattaaatttatattttttgaatttactt
TGGAAAAAAACTATCTGAAGTTCAACATTCTGTCGAATAGTGTTTTGGTC
AGAATTTCATACTCTATTAGCCAGAGTTTCAGGCGTGTTGTATATATAAC
TTCCG
Run BLAST on NCBI

protein sequence of TCONS_00020044-protein

>TCONS_00020044-protein ID=TCONS_00020044-protein|Name=TCONS_00020044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MPIVGTCTEMCPHEEHVMRSRTKRLHFIERHSQQSVKEYARCAAGSTRSP
KELRTPDALVKTTHFLVSLLNFEHHDNNLLATTNFITDRLRAVRQDIIIQ
QLPPHFGISIIQQIVRYHILVQYLLHQQPPTSFDPVLNDQLLRSYLSDLM
EYYQLLPIEENLKHQVDEFKSYQLLLNIHDQAFIQRLLIDFFEESSSVLR
LKEPSCRFQTVFSLYLSWSSGNFYRFFKKCHGLSFLESCCLLEHFTTIRV
HFLDVLSAGFQSKHFKFNLEKMQDWFCFDNEKDLYEFLKHFNLPFDENNK
QVNFQQKKTFQLESRSDRFDLIRKCTYIKLIENSRELESKNYTQVILPT
Run BLAST on NCBI

transcript from alignment at sc0000348:214537..215955+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020044 ID=TCONS_00020044|Name=TCONS_00020044|organism=Clytia hemisphaerica|type=transcript|length=1419bp|location=Sequence derived from alignment at sc0000348:214537..215955+ (Clytia hemisphaerica)
TGTAACCATATACATACCTTAATGTACCTTTTCTTTTCAGATATAATAAC
TAAGAAATAAAACTAAATGGAAAATGCCGATTGTTGGGACCTGCACAGAA
ATGTGCCCACATGAAGAACACGTGATGAGATCGAGAACAAAAAGGTTGCA
TTTCATTGAACGCCATTCCCAACAGAGTGTGAAAGAATACGCCCGATGCG
CCGCAGGGTCCACTCGTTCGCCGAAAGAACTGCGAACGCCTGATGCTTTG
GTCAAAACAACTCATTTCTTAGGTAAGGAAACTTAGGTTAGCAGCCATCG
TAAAGAACCCGACCGAAGGAAAAAAGTCTCAATCAAGGTAAAGAACATTC
TGGTCCTAAGCCCTTTTCAAGCATGTAGGTCAAAAACTTgctcttttaaa
aaattctgtaaatatcaaatttcttattttcttcaGTTTCCCTGCTCAAC
TTTGAACACCATGACAACAATCTCTTAGCAACCACCAATTTCATCACCGA
CAGATTACGAGCTGTTCGTCAAGACATCATTATACAGCAATTACCACCAC
ACTTCGGTATCTCAATCATCCAGCAGATCGTTCGATACCACATCCTGGTG
CAATACCTTCTTCACCAACAACCTCCAACATCTTTCGATCCAGTGCTCAA
CGATCAACTTCTTCGCTCCTATCTCTCAGATCTGATGGAATATTACCAGC
TTTTACCAATAGAGGAGAATCTCAAACATCAAGTTGACGAGTTCAAGTCG
TATCAACTATTGTTAAATATTCATGACCAAGCTTTCATCCAACGTCTGTT
GAttgacttttttgaagaaaGCAGCTCTGTATTAAGGCTAAAGGAACCCT
CTTGTAGATTTCAGACTGTTTTCTCTTTATACTTGAGCTGGTCTTCTGGT
AATTTCTACAGATTCTTCAAGAAATGTCATGGATTAAGTTTCCTTGAGAG
TTGTTGTCTGCTGGAGCACTTTACAACCATTCGCGTCCATTTTCTGGATG
TTTTGAGTGCTGGATTCCAAAgtaaacatttcaaattcaacTTAGAGAAA
ATGCAAGACTGGTTTTGTTTTGACAACGAAAAGGATCTTTAcgaattttt
gaaacatttcaatCTACCATTTGACGAAAACAATAAGCAGGTGAATTTTC
AACAGAAGAAAACTTTTCAGTTGGAATCAAGGTCTGACAGATTTGATTTA
ATAAGGAAATGTACTTATATAAAGTTGATAGAAAATTCTAGAGAGTTGGA
ATCGAAAAATTATACTCAAGTCATTTTACCGACTTaattaaatttatatt
ttttgaatttacttTGGAAAAAAACTATCTGAAGTTCAACATTCTGTCGA
ATAGTGTTTTGGTCAGAATTTCATACTCTATTAGCCAGAGTTTCAGGCGT
GTTGTATATATAACTTCCG

Coding sequence (CDS) from alignment at sc0000348:214537..215955+

>TCONS_00020044 ID=TCONS_00020044|Name=TCONS_00020044|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000348:214537..215955+ (Clytia hemisphaerica)
ATGCCGATTGTTGGGACCTGCACAGAAATGTGCCCACATGAAGAACACGT
GATGAGATCGAGAACAAAAAGGTTGCATTTCATTGAACGCCATTCCCAAC
AGAGTGTGAAAGAATACGCCCGATGCGCCGCAGGGTCCACTCGTTCGCCG
AAAGAACTGCGAACGCCTGATGCTTTGGTCAAAACAACTCATTTCTTAGT
TTCCCTGCTCAACTTTGAACACCATGACAACAATCTCTTAGCAACCACCA
ATTTCATCACCGACAGATTACGAGCTGTTCGTCAAGACATCATTATACAG
CAATTACCACCACACTTCGGTATCTCAATCATCCAGCAGATCGTTCGATA
CCACATCCTGGTGCAATACCTTCTTCACCAACAACCTCCAACATCTTTCG
ATCCAGTGCTCAACGATCAACTTCTTCGCTCCTATCTCTCAGATCTGATG
GAATATTACCAGCTTTTACCAATAGAGGAGAATCTCAAACATCAAGTTGA
CGAGTTCAAGTCGTATCAACTATTGTTAAATATTCATGACCAAGCTTTCA
TCCAACGTCTGTTGAttgacttttttgaagaaaGCAGCTCTGTATTAAGG
CTAAAGGAACCCTCTTGTAGATTTCAGACTGTTTTCTCTTTATACTTGAG
CTGGTCTTCTGGTAATTTCTACAGATTCTTCAAGAAATGTCATGGATTAA
GTTTCCTTGAGAGTTGTTGTCTGCTGGAGCACTTTACAACCATTCGCGTC
CATTTTCTGGATGTTTTGAGTGCTGGATTCCAAAgtaaacatttcaaatt
caacTTAGAGAAAATGCAAGACTGGTTTTGTTTTGACAACGAAAAGGATC
TTTAcgaatttttgaaacatttcaatCTACCATTTGACGAAAACAATAAG
CAGGTGAATTTTCAACAGAAGAAAACTTTTCAGTTGGAATCAAGGTCTGA
CAGATTTGATTTAATAAGGAAATGTACTTATATAAAGTTGATAGAAAATT
CTAGAGAGTTGGAATCGAAAAATTATACTCAAGTCATTTTACCGACTTaa
ATGCCGATTGTTGGGACCTGCACAGAAATGTGCCCACATGAAGAACACGT
GATGAGATCGAGAACAAAAAGGTTGCATTTCATTGAACGCCATTCCCAAC
AGAGTGTGAAAGAATACGCCCGATGCGCCGCAGGGTCCACTCGTTCGCCG
AAAGAACTGCGAACGCCTGATGCTTTGGTCAAAACAACTCATTTCTTAGT
TTCCCTGCTCAACTTTGAACACCATGACAACAATCTCTTAGCAACCACCA
ATTTCATCACCGACAGATTACGAGCTGTTCGTCAAGACATCATTATACAG
CAATTACCACCACACTTCGGTATCTCAATCATCCAGCAGATCGTTCGATA
CCACATCCTGGTGCAATACCTTCTTCACCAACAACCTCCAACATCTTTCG
ATCCAGTGCTCAACGATCAACTTCTTCGCTCCTATCTCTCAGATCTGATG
GAATATTACCAGCTTTTACCAATAGAGGAGAATCTCAAACATCAAGTTGA
CGAGTTCAAGTCGTATCAACTATTGTTAAATATTCATGACCAAGCTTTCA
TCCAACGTCTGTTGAttgacttttttgaagaaaGCAGCTCTGTATTAAGG
CTAAAGGAACCCTCTTGTAGATTTCAGACTGTTTTCTCTTTATACTTGAG
CTGGTCTTCTGGTAATTTCTACAGATTCTTCAAGAAATGTCATGGATTAA
GTTTCCTTGAGAGTTGTTGTCTGCTGGAGCACTTTACAACCATTCGCGTC
CATTTTCTGGATGTTTTGAGTGCTGGATTCCAAAgtaaacatttcaaatt
caacTTAGAGAAAATGCAAGACTGGTTTTGTTTTGACAACGAAAAGGATC
TTTAcgaatttttgaaacatttcaatCTACCATTTGACGAAAACAATAAG
CAGGTGAATTTTCAACAGAAGAAAACTTTTCAGTTGGAATCAAGGTCTGA
CAGATTTGATTTAATAAGGAAATGTACTTATATAAAGTTGATAGAAAATT
CTAGAGAGTTGGAATCGAAAAATTATACTCAAGTCATTTTACCGACTTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011266XLOC_011266Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020044-proteinTCONS_00020044-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020044-exon-sc0000348-1491911889:214537..214808TCONS_00020044-exon-sc0000348-1491911889:214537..214808Clytia hemisphaericaexon
TCONS_00020044-exon-sc0000348-1510915933:214537..214808TCONS_00020044-exon-sc0000348-1510915933:214537..214808Clytia hemisphaericaexon
TCONS_00020044-exon-sc0000348-1575043694:214537..214808TCONS_00020044-exon-sc0000348-1575043694:214537..214808Clytia hemisphaericaexon
TCONS_00020044-exon-sc0000348-1491911889:214973..215955TCONS_00020044-exon-sc0000348-1491911889:214973..215955Clytia hemisphaericaexon
TCONS_00020044-exon-sc0000348-1510915933:214973..215955TCONS_00020044-exon-sc0000348-1510915933:214973..215955Clytia hemisphaericaexon
TCONS_00020044-exon-sc0000348-1575043694:214973..215955TCONS_00020044-exon-sc0000348-1575043694:214973..215955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:214537..215955 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.4851	15.876	5.79888	3.34386	3.339	2.71081	4.18621	3.63331	3.14398	2.30119	3.19576	3.54646	3.78966	5.552	3.21634	3.67897	3.61557	4.59316	1.26193	1.05641	2.06598	1.67952	19.0946	15.1677	6.73691	7.60505	1.48825	2.82915	8.28208	11.6983
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005062SAC3/GANP/THP3
Blast
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BLAST of TCONS_00020044 vs. Swiss-Prot (Human)
Match: GANP (Germinal-center associated nuclear protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.375e-22
Identity = 76/263 (28.90%), Postives = 124/263 (47.15%), Query Frame = 2 
Query:   83 VGTCTEMCPHEEHVMRSRTKRLHFIE--------RHSQQSVKEYARCAAGSTRS-PKELRTPDALVKTTHFLVSLLNFEHHDNNLLATTNFITDRLRAVRQDIIIQQLPPHFGISIIQQIVRYHILVQYLLHQQPPTSFDPVLNDQLLRSYLSDLMEYYQLLPIEENLKHQVDEFKSYQLLLNIHDQAFIQRLLIDFFEESSSVLRLKEPSCRFQTVFSLYLSWSSGNFYRFFKKCHGLSFLESCCLLEHFTTIRVHFLDVLS 844
            VGTC +MCP +E  MR    +L   E         H+  +VKEY+R +A      P ELR    L +T  +LV+ +  +  + +L    +F+ +R R +R+DI  Q L     +S+I++  R+HI   + + ++P +SFD  +N++ +   L  L E YQ L  +        EF+ Y +LL+++          D   E          S   +     + + +S NF RFFK     S+L +C L  +F+ IR   L  L+
Sbjct:  634 VGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQI-MDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNKG--------DILREVQQFHPAVRNSSEVKFAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALN 886
The following BLAST results are available for this feature:
BLAST of TCONS_00020044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GANP2.375e-2228.90Germinal-center associated nuclear protein OS=Homo... [more]
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