TCONS_00020007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020007
Unique NameTCONS_00020007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020007 ID=TCONS_00020007|Name=TCONS_00020007|organism=Clytia hemisphaerica|type=transcript|length=265bp
GTATCATAAAACGCTCTGCTGTACTACCTGCTAATTTTAGCTGTGTATTT
TGAAAAGACATATTTTCTTCTATTGACTTGCACATGTTCAATAGTTTTGC
ATTTGCATTAACTTCGATATCTTTCCGCCCTTCTTCACTAGGTATTTTTT
GATGCAAGGATATTAGGATTTCGCTCAAGTCTAGGTTGTGTGGAGCTAAT
CGCTTTCTCTGACCTTTGATCCATCTTGGCAAGTATTGATTATACCATTT
ACATGGGTTCAAAGG
Run BLAST on NCBI

transcript from alignment at sc0000345:84331..84595

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020007 ID=TCONS_00020007|Name=TCONS_00020007|organism=Clytia hemisphaerica|type=transcript|length=265bp|location=Sequence derived from alignment at sc0000345:84331..84595 (Clytia hemisphaerica)
CCTTTGAACCCATGTAAATGGTATAATCAATACTTGCCAAGATGGATCAA
AGGTCAGAGAAAGCGATTAGCTCCACACAACCTAGACTTGAGCGAAATCC
TAATATCCTTGCATCAAAAAATACCTAGTGAAGAAGGGCGGAAAGATATC
GAAGTTAATGCAAATGCAAAACTATTGAACATGTGCAAGTCAATAGAAGA
AAATATGTCTTTTCAAAATACACAGCTAAAATTAGCAGGTAGTACAGCAG
AGCGTTTTATGATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011239XLOC_011239Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020007-exon-sc0000345-1491911889:84331..84595TCONS_00020007-exon-sc0000345-1491911889:84331..84595Clytia hemisphaericaexon
TCONS_00020007-exon-sc0000345-1510915933:84331..84595TCONS_00020007-exon-sc0000345-1510915933:84331..84595Clytia hemisphaericaexon
TCONS_00020007-exon-sc0000345-1575043694:84331..84595TCONS_00020007-exon-sc0000345-1575043694:84331..84595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:84331..84595 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.06941	0	0.821584	0	0.783264	0.733283	0.513388	1.27183	0	0.405745	1.62073	4.62863	1.72971	4.82624	2.74409	1.87507	1.94288	2.03309	0	0	1.39707	0.635069	2.61642	2.3351	0	0	4.0572	6.20047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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