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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020000 ID=TCONS_00020000|Name=TCONS_00020000|organism=Clytia hemisphaerica|type=transcript|length=1553bp
GCTAAGCGaaatgaaaagataaaaatatatactttgtTTGCTTGGATAAC
TAAATGATTGCATAGCAATGAATTAAAcatgaaaagtaaaaataaagttt
CAGGCTAAAACATCGAAAACGATTAACGTGATAATTTAAGAAATGTAGAC
TAgttctttcttttgaaattttctccaGCTTCCCCacaacacaaaaataa
aaaattatacaatatcatattatattatattatctaGAAATAAATACCCA
AGTAACTCGACATATAATTTACAAATTAGAGTTAATACTTTTCTTTAGTT
AGTTAGTTTTCATGcattaaataaatttaaaatgaatgaaagatGGTCCG
AGATGGTCCGAGCTGGTCCGAGAAATATTTATTTAATCTTTGAATGTTTA
GAAAAATGTATAGCGGATTCTGACCAATATAATCTTTATTTCCGAAGCTT
TGAACTTATTTCAGTCTGGTGTTGTCCCTGATACAGAAATTTAcgattca
ccaaaatttcagtaatgaaaaataaaaaagtacgaaaagaaaatatagaa
aaatattcaaaaattaccAGAAAAGttatgttaaaaaaataattataccC
ATACgaaaataaatacaaataaGCTTACTCGAAATGAAAGCATTCTTTGA
CATCACTTGAAAATTACAGGTGAATGAGTTGGCTGAAGAGATATTCACAT
ATTTTTGGGACATAATTGTGGAAAACTGCTTCCCAAATAATATTCGATTT
CTAAGTTTTACTAATTCATTGTCAAATTGGAATAACCttcaacaaatatt
ttcttcattgAAGGAGGGAAAATTAAACTGACTTAAATTAGAAATACTCT
GAAGATTGTATTGAATTGCTGAAATTTACAAAACAGTGGCATTGATTGGA
CAAAGCATAATATATATTGAAATGCTGATATTTTTCACAAGTGAGGCCAT
GAGAACAAGTGaagttttagtgaaattttcTCGAGTGTTTGAGACTATGT
GCATTTAAgaataacaaaaataataatcaaTTTTCTTTGGAGCTAGAAAA
GTCTCTTtagattgaaaaaaactttcagtaAGCTAACCCCACGTTTACAT
AATCTTAAATGATTTCTANCAGCAGCCATCAAGACTAAGGCCAACATTTT
CTGATGTTTGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTT
TGTCCTCAAACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCT
TCGAATTGGTCTGATTGGTGGTAGGCAGGTTTCCGTTTCGCCCTTCTTGC
CTTTGGTTGAAGTTGACTTTGCTTCAACATATGCCTCTACACAAACAACA
TCCAACTTAACGAGAGGATATCGATCAGAAAAAGATAATAACAAAAGTCT
CTATTTAAAATTGGAAAACCATCTGCCCCCTCATAAACTGTTAGCAGAGA
TCAACCAACCAAGTTTCGATTTGATTGTTCAGCTGTATCAATGTCTTCCT
GTATTTAAGTTTTATCTACTAAACGGATGAAGGAAGTACATAGTAACCCG
AAA Run BLAST on NCBI transcript from alignment at sc0000345:193694..196379- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020000 ID=TCONS_00020000|Name=TCONS_00020000|organism=Clytia hemisphaerica|type=transcript|length=2686bp|location=Sequence derived from alignment at sc0000345:193694..196379- (Clytia hemisphaerica)
GCTAAGCGAAATGAAAAGATAAAAATATATACTTTGTTTGCTTGGATAAC
TAAATGATTGCATAGCAATGAATTAAACATGAAAAGTAAAAATAAAGTTT
CAGGCTAAAACATCGAAAACGATTAACGTGATAATTTAAGAAATGTAGAC
TAGTTCTTTCTTTTGAAATTTTCTCCAGCTTCCCCACAACACAAAAATAA
AAAATTATACAATATCATATTATATTATATTATCTAGAAATAAATACCCA
AGTAACTCGACATATAATTTACAAATTAGAGTTAATACTTTTCTTTAGTT
AGTTAGTTTTCATGCATTAAATAAATTTAAAATGAATGAAAGATGGTCCG
AGATGGTCCGAGCTGGTCCGAGAAATATTTATTTAATCTTTGAATGTTTA
GAAAAATGTATAGCGGATTCTGACCAATATAATCTTTATTTCCGAAGCTT
TGAACTTATTTCAGTCTGGTGTTGTCCCTGATACAGAAATTTACGATTCA
CCAAAATTTCAGTAATGAAAAATAAAAAAGTACGAAAAGAAAATATAGAA
AAATATTCAAAAATTACCAGAAAAGTTATGTTAAAAAAATAATTATACCC
ATACGAAAATAAATACAAATAAGCTTACTCGAAATGAAAGCATTCTTTGA
CATCACTTGAAAATTACAGGTGAATGAGTTGGCTGAAGAGATATTCACAT
ATTTTTGGGACATAATTGTGGAAAACTGCTTCCCAAATAATATTCGATTT
CTAAGTTTTACTAATTCATTGTCAAATTGGAATAACCTTCAACAAATATT
TTCTTCATTGAAGGAGGGAAAATTAAACTGACTTAAATTAGAAATACTCT
GAAGATTGTATTGAATTGCTGAAATTTACAAAACAGTGGCATTGATTGGA
CAAAGCATAATATATATTGAAATGCTGATATTTTTCACAAGTGAGGCCAT
GAGAACAAGTGAAGTTTTAGTGAAATTTTCTCGAGTGTTTGAGACTATGT
GCATTTAAGAATAACAAAAATAATAATCAATTTTCTTTGGAGCTAGAAAA
GTCTCTTTAGATTGAAAAAAACTTTCAGTAAGCTAACCCCACGTTTACAT
AATCTTAAATGATTTCTANCAGCAGCCATCAAGACTAAGGCCAACATTTT
CTGATGTTTGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTT
TGTCCTCAAACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCT
TCGAATTGGTCTGATTGGTGGTAGGCAGGTTTCTNTCTCTGTCGTCAGTC
ATTGCTTCTTCATCATTGTTATAACAGTTTTTATCCCAATTAAAAATACG
ATTTATTGCAATGATTGATGTACATGAAAGCACAATTATTGTTCCAATTA
AAGCTGATAAACCAGGCGGATGATGAACAAAAATGTATTGGAAAAGAAAT
GCATAAATTACATCCATATTGCGAACCAAAACAGCAGGCCCAGGATTTTC
TAGTTGTAAGGCCTCAGCCATAAACATCAGACCTATGAAGGCAACAAAAC
CAACAACAAATAGTAATCCCCAAGATAAGCTATTCAGTTCTGTTGTCACA
ACATGTTCCCCTTTAATTCCCATTGCAATGGGTGCAATTATCATGCCAAA
AATACTTGGATAAAAGATTGTTAACGTAACATCAGTCTTCTTTCCATTCA
TCTTGTTTAAAATGTAAAACCACGACAAACAAATTGCAGCTAGTAAAGCA
AAGCTGGCACCAACAATATAATCAGTAGAGAGAGTGTTGATCATACTTTG
AGAGTGTGGGACTTTGTGCTGATGATGAAAGTAGATTGATGTTTTATTTC
CTTCAATAATCGACGGTTTGGCAATGAGAATAACTCCAACAAAACTAACG
GTGCCAAATATACCGTCCACCCAACCACAGCATTTTTTAGTGATACAGAA
ACTAAAAATCATGGTAAAGACTGGAGCAGTGAATTGAATAACTGTTGCAT
CACCAACAGGAATCTTTTCCAGGGCAAGATAAACCAAAACAATTGCAGCA
GCCTCAATGATACCCATTATACACAAAGACCAAATGTTTTTCTTTTCAGA
TCCGTATGGATGAACTTTGCCGTGTACCATGAATATCACTGTGAAGACAA
ATTGTATTAACGAGCGTACAAACAAGACTTCAAAGGACGATATGTGCAGG
CCCGGATTTTTCATGTAAACAAACTGAACCAAACTGTTTCCTAGTGTTAA
AAATAAACCAGCAGCAGCCATCAAGACTAAGGCCAACATTTTCTGATGTT
TGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTTTGTCCTCA
AACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCTTCGAATTG
GTGGTAGGCAGGTTTCCGTTTCGCCCTTCTTGCCTTTGGTTGAAGTTGAC
TTTGCTTCAACATATGCCTCTACACAAACAACATCCAACTTAACGAGAGG
ATATCGATCAGAAAAAGATAATAACAAAAGTCTCTATTTAAAATTGGAAA
ACCATCTGCCCCCTCATAAACTGTTAGCAGAGATCAACCAACCAAGTTTC
GATTTGATTGTTCAGCTGTATCAATGTCTTCCTGTATTTAAGTTTTATCT
ACTAAACGGATGAAGGAAGTACATAGTAACCCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020000-exon-sc0000345-1575043694:195102..196379 | TCONS_00020000-exon-sc0000345-1575043694:195102..196379 | Clytia hemisphaerica | exon |
| TCONS_00020000-exon-sc0000345-1575043694:193694..193968 | TCONS_00020000-exon-sc0000345-1575043694:193694..193968 | Clytia hemisphaerica | exon |
| TCONS_00020000-exon-sc0000345-1510915933:195102..196379 | TCONS_00020000-exon-sc0000345-1510915933:195102..196379 | Clytia hemisphaerica | exon |
| TCONS_00020000-exon-sc0000345-1510915933:193694..193968 | TCONS_00020000-exon-sc0000345-1510915933:193694..193968 | Clytia hemisphaerica | exon |
| TCONS_00020000-exon-sc0000345-1491911889:195102..196379 | TCONS_00020000-exon-sc0000345-1491911889:195102..196379 | Clytia hemisphaerica | exon |
| TCONS_00020000-exon-sc0000345-1491911889:193694..193968 | TCONS_00020000-exon-sc0000345-1491911889:193694..193968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:193694..196379 - |
Blast
The following BLAST results are available for this feature:
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