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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019981 ID=TCONS_00019981|Name=TCONS_00019981|organism=Clytia hemisphaerica|type=transcript|length=858bp
gtttaaagcaattaggtccacatgtttcttttatattccttttagAGAGT
TTACGATTTTGAGACGGCAGAGGGAACGTCAACGGGAGAGAGTGATTTTG
TCTCTAGTGCGCATGCGCAAGGTCAAGGAATCTCCTTTTTGAAGTTTTCG
TTTGGCGGGACCGACTTCATAACACAAGATTTGAAGTTTCCTGGAAAACG
TCATGGCTCAATTCGCagaaaaGAAGAGGCCAATGAACTGGACACCAAGA
CACGATGAAATCTTGGTACaggaaattttgttgtttgagCCATGGACGCA
GAAGAAGGGCAGCCCAGAAAGAGGTTCGACATGGTCAGCAATAGCTGACA
ATCTTAATCAAATCGACAATccttttttttctgtaaatcaACGATCTGTT
CGAGATCATTACAATGTTCTCGAAGGAAATTTCAAAAGGAAACGCAATGC
CCAAGAGAAAGCATCAGGTACAGCATACCCAGAAGACACGGTTTTTGACA
ATGGCATGAATGATATTATCCAACAATTCCATGATTACGATGTTTTGCTT
GCCAAAGAAAAGCAGGCtaaagaagatgaagaaaacaaagagaaaGAGCA
AGCTCAGCAAATCGTGAAAGCATCACTAGAAACTTTTAGAGAAACGCAGA
AAAGGAAAGCAGAAGCTGGTGAAGAAACAGTCTCATCCAAAAAAACAAGA
AGGTCTGAAACTGAGACACTAGTTTATCTAcgtgaaaaaaatgaaagcaa
CATTAAATTGCAGGAACAACAGCTAGAACTACAGAAGCAAGAATTAGAAT
TACGCAAACAACAAATGGACAATTTCAATCAAGTTTTAACGAACTCACAG
AACCAAAC Run BLAST on NCBI protein sequence of TCONS_00019981-protein >TCONS_00019981-protein ID=TCONS_00019981-protein|Name=TCONS_00019981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MAQFAEKKRPMNWTPRHDEILVQEILLFEPWTQKKGSPERGSTWSAIADN
LNQIDNPFFSVNQRSVRDHYNVLEGNFKRKRNAQEKASGTAYPEDTVFDN
GMNDIIQQFHDYDVLLAKEKQAKEDEENKEKEQAQQIVKASLETFRETQK
RKAEAGEETVSSKKTRRSETETLVYLREKNESNIKLQEQQLELQKQELEL
RKQQMDNFNQVLTNSQNQ Run BLAST on NCBI transcript from alignment at sc0000345:273285..276871+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019981 ID=TCONS_00019981|Name=TCONS_00019981|organism=Clytia hemisphaerica|type=transcript|length=3587bp|location=Sequence derived from alignment at sc0000345:273285..276871+ (Clytia hemisphaerica)
gtttaaagcaattaggtccacatgtttcttttatattccttttagAGAGT
TTACGATTTTGAGACGGCAGAGGGAACGTCAACGGGAGAGAGTGATTTTG
TCTCTAGTGCGCATGCGCAAGGTCAAGGAATCTCCTTTTTGAAGTTTTCG
TTTGGCGGGACCGACTTCATAACACAAGATTTGAAGTTTCCTGGAAAACG
TCATGGCTCAATTCGCagaaaagtgagtttatctttTACTTTGTAGTaag
gttttttctttttacaataAACCTTATGTCTGCTCTTTTTCGTTTGTAAA
TTGAGCTTGTTTTGCAATTATTTTGGCTTTCACtttgtttgtttatgttt
ataCTGTTATATGAGATACATATTAAAAACTTCTCTTGGTTGCTTGCtct
gcgatttttacagctcgaacactacaatggagagcgactatttttggttg
aaatgagaccttataatattgctaaccgtattccaatatttaaaagttca
acaaaagtctgctctcctccacacaagtccgagttgttcactcggtgacG
ATTTTGCGAATCGCTAATTCTTTagtctgcgatttttacagctcgaacac
tgcgatggagagcaattattttttatggaaatgagaccttataatattcc
taaccgtattccaatatttaaaagttcaacaaaagtctgctctcctccac
acaagtccgagttgttcactcggtggcGATATCGCGAATCACTAATTTCt
cagtctgcgatttttacagctcgaacactgcAATGGAGAGCgagtatttt
tggttgaaatgagaccttataatATTGCTAACCgaattttaatatttaaa
agttcaacaaaagTCTGCTCTCTTCCACACAaggccgagttgttcactcg
gtggTGATATCGCGAATCCCTAATTTCtcagtctgcgatttttacagctc
gaacactgcgatggagagcgactatttttggttgaaatgagaccttttaa
tattcctaaccgtattccaatatttaaaagtttaacagaagtctgctctc
ctccacacaagtccgagttgttcactcggtggcgatatcgcgaatcccta
atttctcagtctgcgatttttacagctcgaacactgcaatggagagcgac
tatttttggttgaaatgagaccttataatattgctaaccgtattccaata
tttaaaagttcaacaaaagTCTGCTTTCCTCCACACAAgtccgagttgtt
cactcggtgacGATTTTGCGAATCCCTAATTCTTTagtctgcgattttta
cagctcgaacactgcgatggagagcaattattttttatggaaatgagacc
ttataatattgctaaccgtattccaatatttaaaagttcaacgaaagtct
gctctcctccacttaaggccgagttgttcactcggtggcGATATCGCGAA
TCCCTAATTTCTCCGTCTGCGATTTTTAGAGCTCGAACACTGCAATGGAG
AGCgagtatttttggttgaaatgagTCCTTATAATATTGCTAACCGAATT
ctaatatttaaaagttcaacagaagtctgcCCTCCTCCACACAAGGCCGA
GTTGTTCACTTGGTAGCGATATCGCGAATCCCTAATTTCtcagtctgcga
tttttacagctcgaacactgcgGTGGAGAGCGATTATTTTTTgtggaaat
gagaccttataatattcctaaccgtattccaatatttaaaagttcaacaa
aagtctgctctcctccacttaaggccgagttgttcactcggtggcGATAT
CGCTAATCCCTAATTCGCcagtctgcgatttttacagctcgaacactgcg
atggagagcgattatttttggtagaaatgagaccttataatATTCTCAAC
CGTATTCCANTCTCAGTCTGCGATTTTTAGAGCTCGAACACTGCAATGGA
GAGCgagtatttttggttgaaatgagTCCTTATAATATTGCTAACCGAAT
TctaatatttaaaagttcaacagaagtctgcCCTCCTCCACACAAGGCCG
AGTTGTTCACTTGGTGGCGATATCGCGAATCCCTAATTTCtcagtctgcg
atttttacagctcgaacactgcgGTGGAGAGCGATTATTTTTTgtggaaa
tgagaccttataatattcctaaccgtattccaatatttaaaagttcaaca
aaagTCTGCTCTCTTCCACACAAgtccgagttgttcactcggtgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCGATATCGCGAATCCCTAATTTCtcagtctgcgatttttacagctcga
acactgcgatggagagcgactttttttggtggaaatgagaccttataatA
TTCCTAACCGTATTCCNGACGATTTCGCGAATCCCTAATTCTTCAGTCTt
cgatttttacagctcgaacactgcgatggagagcaatttttttttatgga
aataaaaCTTGGGAATGTTTTCTAACATAttccttttatttgaaagtcgt
AAGTTAATTaggtctttcaaaaaaaaattcaatcaaagttTGAATCCCTA
ATCCCTAATTGCGAATCCCTAATTCCTAACTGCGAATACCTAACCAAGTT
ATTTTTAATAACcaggcccggtggaacaaccgtaaaattggggaggctga
aggctgaagatgagataaaatttgctaggaatttgagaaaaaaatctcat
ttgctcaaaagtggggaggctgaagtctcctcAGTCCCttgcttccgccg
ggcctgaaaACTTACACTTTTTGCTGGTGGTACTGTTTAAAGTTTCTATT
TTCATGGCTTAAAACAATAAGCTATCTACTTTAGGACATTTCTCTGGTTG
TTTTATATAAATacgtgttttgatattttttttccttGGTATTTTTCTTA
GGAAGAGGCCAATGAACTGGACACCAAGACACGATGAAATCTTGGTACag
gaaattttgttgtttgagCCATGGACGCAGAAGAAGGGCAGCCCAGAAAG
AGGTTCGACATGGTCAGCAATAGCTGACAATCTTAATCAAATCGACAATc
cttttttttctgtaaatcaACGATCTGTTCGAGATCATTACAATGTTCTC
GAAGGAAATTTCAAAAGGAAACGCAATGCCCAAGAGAAAGCATCAGGTAC
AGCATACCCAGAAGACACGGTTTTTGACAATGGCATGAATGATATTATCC
AACAATTCCATGATTACGATGTTTTGCTTGCCAAAGAAAAGCAGGCtaaa
gaagatgaagaaaacaaagagaaaGAGCAAGCTCAGCAAATCGTGAAAGC
ATCACTAGAAACTTTTAGAGAAACGCAGAAAAGGAAAGCAGAAGCTGGTG
AAGAAACAGTCTCATCCAAAAAAACAAGAAGGTCTGAAACTGAGACACTA
GTTTATCTAcgtgaaaaaaatgaaagcaaCATTAAATTGCAGGAACAACA
GCTAGAACTACAGAAGCAAGAATTAGAATTACGCAAACAACAAATGGACA
ATTTCAATCAAGTTTTAACGAACTCACAGAACCAAAC Coding sequence (CDS) from alignment at sc0000345:273285..276871+ >TCONS_00019981 ID=TCONS_00019981|Name=TCONS_00019981|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0000345:273285..276871+ (Clytia hemisphaerica)
ATGGCTCAATTCGCagaaaaGAAGAGGCCAATGAACTGGACACCAAGACA
CGATGAAATCTTGGTACaggaaattttgttgtttgagCCATGGACGCAGA
AGAAGGGCAGCCCAGAAAGAGGTTCGACATGGTCAGCAATAGCTGACAAT
CTTAATCAAATCGACAATccttttttttctgtaaatcaACGATCTGTTCG
AGATCATTACAATGTTCTCGAAGGAAATTTCAAAAGGAAACGCAATGCCC
AAGAGAAAGCATCAGGTACAGCATACCCAGAAGACACGGTTTTTGACAAT
GGCATGAATGATATTATCCAACAATTCCATGATTACGATGTTTTGCTTGC
CAAAGAAAAGCAGGCtaaagaagatgaagaaaacaaagagaaaGAGCAAG
CTCAGCAAATCGTGAAAGCATCACTAGAAACTTTTAGAGAAACGCAGAAA
AGGAAAGCAGAAGCTGGTGAAGAAACAGTCTCATCCAAAAAAACAAGAAG
GTCTGAAACTGAGACACTAGTTTATCTAcgtgaaaaaaatgaaagcaaCA
TTAAATTGCAGGAACAACAGCTAGAACTACAGAAGCAAGAATTAGAATTA
CGCAAACAACAAATGGACAATTTCAATCAAGTTTTAACGAACTCACAGAA
CCAAATGGCTCAATTCGCagaaaaGAAGAGGCCAATGAACTGGACACCAA
GACACGATGAAATCTTGGTACaggaaattttgttgtttgagCCATGGACG
CAGAAGAAGGGCAGCCCAGAAAGAGGTTCGACATGGTCAGCAATAGCTGA
CAATCTTAATCAAATCGACAATccttttttttctgtaaatcaACGATCTG
TTCGAGATCATTACAATGTTCTCGAAGGAAATTTCAAAAGGAAACGCAAT
GCCCAAGAGAAAGCATCAGGTACAGCATACCCAGAAGACACGGTTTTTGA
CAATGGCATGAATGATATTATCCAACAATTCCATGATTACGATGTTTTGC
TTGCCAAAGAAAAGCAGGCtaaagaagatgaagaaaacaaagagaaaGAG
CAAGCTCAGCAAATCGTGAAAGCATCACTAGAAACTTTTAGAGAAACGCA
GAAAAGGAAAGCAGAAGCTGGTGAAGAAACAGTCTCATCCAAAAAAACAA
GAAGGTCTGAAACTGAGACACTAGTTTATCTAcgtgaaaaaaatgaaagc
aaCATTAAATTGCAGGAACAACAGCTAGAACTACAGAAGCAAGAATTAGA
ATTACGCAAACAACAAATGGACAATTTCAATCAAGTTTTAACGAACTCAC
AGAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019981-exon-sc0000345-1491911889:273285..273506 | TCONS_00019981-exon-sc0000345-1491911889:273285..273506 | Clytia hemisphaerica | exon |
| TCONS_00019981-exon-sc0000345-1510915933:273285..273506 | TCONS_00019981-exon-sc0000345-1510915933:273285..273506 | Clytia hemisphaerica | exon |
| TCONS_00019981-exon-sc0000345-1575043694:273285..273506 | TCONS_00019981-exon-sc0000345-1575043694:273285..273506 | Clytia hemisphaerica | exon |
| TCONS_00019981-exon-sc0000345-1491911889:276236..276871 | TCONS_00019981-exon-sc0000345-1491911889:276236..276871 | Clytia hemisphaerica | exon |
| TCONS_00019981-exon-sc0000345-1510915933:276236..276871 | TCONS_00019981-exon-sc0000345-1510915933:276236..276871 | Clytia hemisphaerica | exon |
| TCONS_00019981-exon-sc0000345-1575043694:276236..276871 | TCONS_00019981-exon-sc0000345-1575043694:276236..276871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:273285..276871 + |
Blast
The following BLAST results are available for this feature:
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