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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019971 ID=TCONS_00019971|Name=TCONS_00019971|organism=Clytia hemisphaerica|type=transcript|length=780bp
CCACATTTTACTAATAAAATTCAAGCTGTCCAAAAGAAGCATGGTGACAA
GAAATCTGTTTGATGGATATTCCACTTCTCAGGAATGCCAAATATATAAA
TTGCAGCATCTGATGACATTGCTAATACATATGAAAGATTGACCCAAAAA
CTGATGGACCCGTGTGTTTCTAGCTCATGATCATGCTCCAGGAATAGCTC
CACCAGGTCAGGCGTTATCCAAAACAGCAGAAACGTCAGAATCAGTAATA
CTGGTATGAAGAAACGTCTCTTTGATCGGTTTCTATTGAAGTAACTATAT
TTACGTTTGAGTAACGACTCTGTCAGTTTGTTGTGTGTTAAACGATGAAA
AGTGCTTCTTTTGCGTTCTTGTTTATTTTTCCTTAggttcttttgtcttt
gttttgaGTCATGATTGTTGCTCTTAAAGTTCCTGTTTTCATctgtattt
tcaaaaacattgtcAGTCAGGGTTTCTAGGTCTGttggttttttttcaaa
aacttctatGTTGGATTCATCAATAACTTTTCCAATGTCTGTAGATTCTG
TAtctattcttttcttttttccagtTCTACCACTCAACGACTCCAAATCA
TTGCAATGAGGGTTTATATCTTGCTGTTGATTTTGCGACACCCTCCTCTT
GATAGATTCAACGTATAAACGTTGATCCTCGGCAGTCCGCAAATTCTTGA
CAgtgaaaagaaaataaagacctAGCAAGTGAAGCGAGATGCTGGGTACA
AGAAATGACATGGAAATGTGGACATTGTCA Run BLAST on NCBI transcript from alignment at sc0000345:31801..41021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019971 ID=TCONS_00019971|Name=TCONS_00019971|organism=Clytia hemisphaerica|type=transcript|length=9221bp|location=Sequence derived from alignment at sc0000345:31801..41021+ (Clytia hemisphaerica)
CCACATTTTACTAATAAAATTCAAGCTGTCCAAAAGAAGCATGGTGACAA
GAAATCTGTTTGATGGATATTCCACTTCTCAGGTATGTCTTTCAGGTATT
TGGCAGGGCTTTTGACTCTGTTCCAGGCATTTATGATTTAGGAATCATTC
CACAGGAGACAGCCTGCCTTGTTTGGTAAAATGTTTGATCCTATTAATTT
TCACGCAATTACTatttgcagcaaaatttaaagatttgcGATCAACCATT
GACTTTAAAATTGGGAAAAGGACCCTATGATGTTAGGGCTTGGTAAAAAC
TTTAGAAttattaaaggaagaaattttggcggaaagaaaatctggcggat
ttggcggatttgactgaaatccgccaaattaagttcccgccaaaatttct
tttttccgccatccgccaaattaaattcctgccaaattaaacattttgaa
aatatgatctcttttaaggtgtttttgctatttttttgctgttttgacgc
catcttaaggttaaatttttaagcgaccgccaaattaaattcccgccaaa
tttagttttttcgtccatccgccaaattaaattcccgccaaaatttcttc
ctttaaggtagataTCTCAAGTCAAGACCTTGACCCCCAATCAGGAAATT
TATGGAGAATTCCACGAGAGGGTTTTTTGGGACATTGAAAGTGACATATT
GTATAATGCCACAAAATAGGAAAATGCAACATCTCTTTGGTAAATGTCCA
GGGGGGGTACagccgcagggtactaacccatagggtactaacctgatttt
taagaaaaattgtcttaggtaccaccaccccctttttagtaccgggtact
tactttttcttaaggaaaaagggacccccaccccccttttagtaccgggt
acttacttttttaaaggaaaaagggacccccaccccctTTTCAGTACCGG
GTACCGGCTTTAAAATTACCAAGGAAAATAGGAGACACCACCCTTAAAAC
TTCCCAAGCATGGTCCCAATCTTTCAAAAGCCAGCAAAAGCAGCTCTTTG
TTGTTATTATGACTTGTATATACCATATTTTTAACTCAGATCctctaaaa
agttctttaaatcaaacacaacttttaattgcaAAGGTAAAACAACGAAA
TTCCttggcaaaagtaaaatattatatagctgTAATAACGGCAATAAAAG
TATATATCTATCAGAAGAAGTAAAAATCAAGTTGATAGAAATCGAAAGCT
TGGATTGGATGGATTTCCTTATTTTCGTCTTCAATAGATTggtaatttat
tcaaaaattattcaaaactgtGTCAATCTTATGAAAGAAGTTGCAATAGA
ATAAAGTTGCATTGTTGGCTCTGGTTGGCTTTGCTTAGTTGACCTGGCTC
CGTCTTAATTGTCATaaacagacaaacaaacaaacaaacaaatataaaca
gaaATAAGCTATAGGGTATAATATAAACTGCAATAAACTAACCCCTCTAA
CAAAAACAATCATCAGTTTGGATaagaattttattatttaaaagACAGAT
TGTATCACTTTGGATGCGACATCTTGTAATTCTTTTCATCAGAAGGCAAT
GACAAATATATACCTCGTTCTAACTTGAGATATCAAAGACGACCTATCCT
TCTCACTAATTAAAACAATACTGATTTTGAACAATAGGTTTCTTTACATT
AGCTATTTCAATATTTGTATAACTTAGTGGTCATAAAATTCTCCTCTTAG
AAAGTAGGGAAAGTACCCATGAATTTGAATACAATAATTCTTTATTAATA
GAAACATAACagttctttttttctgaaaactattGAAACTAACAACCTCC
AAACTTCCCTACATACTTGATAAGCAGGGAAAGTACCTTCAATTGGAAGG
GGGAACTTTTTAATACTGTCAGATACTGTAAGCCATAACAAGGAAATCTT
TTCTCATCAAAATCCTGAAAGtcgaagacaaaaaattaaacaaatgtaCC
ATATTCAGAGCCTGAGTACTTAGAGAAAATTGAAATGATACCCACCCCAC
CCTAAAATtggtaccgggtactaacttaaAATTGGAGATATACCCACCCC
CACCCCAAAATTAGTACCGGGTACTAACTTTTTTGAATTTCCAAATTAGA
CACCACCACccggctatgggttagtaccctgtggttgtcccccccccccc
tgaaatgTCTTTGCCCTGTAAATAGAGTGGAGGAATGTGAGAGTTATCTT
ATAttgattttagttttaaaaatgtttcagcTATTGAGCTTGATAGCCAG
CTCCTTATCAgcttgttgtttttattttagcatttagcaaATGTTTGGTT
CCTCAGCTGGCAAACAACATTGTTTTAACGGTTATCTTTTGTTCATTTTG
CTTTAAAGCAAAATCTTAATTGGTCGTTTCTTATTCAAAGAAATTGAGGA
CTGAaataaaacatactattttcaaAGGGCCCGAGGGTGTACTGgggcaa
aatggtcaaaagggtcataaattaatgaaattttgacaaaaatttgatcT
TCTTGCTGAATTTCGGGAAAATAGTCATCTAAGATTTTTCGAACAATTTC
CAGAACACACTTATCATCTCACAAACAGTACTCCATGGATAGAAAGGGGA
GATGAAACTTGcactttaaaattgcttatttctaatttttcaaatgattt
atttaaattctaacttttttttatttatgaaatgtatttctcaggtctat
tgacctcatAATAatacctttatttaaaaagaaactattttCTAAATAAA
CCAATGCACCGTCTCCTAAATCTTCTGTTTATTGCAGGAATGCCAAATAT
ATAAATTGCAGCATCTGATGACATTGCTAATACATATGAAAGATTGACCC
AAAAACTGATGGACCCGTGTGTTTCTAGCTCATGATCATGCTCCAGGAAT
AGCTCCACCAGGTCAGGCGTTATCCAAAACAGCAGAAACGTCAGAATCAG
TAATACTGGTATGAAGAAACGTCTCTTTGATCGGTTTCTATTGAAGTAAC
TATATTTACGTTTGAGTAACGACTCTGTCAGTTTGTTGTGTGTTAAACGA
TGAAAAGTGCTTCTTTTGCGTTCTTGTTTATTTTTCCTTAggttcttttg
tctttgttttgaGTCATGATTGTTGCTCTTAAAGTTCCTGTTTTCATctg
tattttcaaaaacattgtcAGTCAGGGTTTCTAGGTCTGttggttttttt
tcaaaaacttctatGTTGGATTCATCAATAACTTTTCCAATGTCTGTAGA
TTCTGTAtctattcttttcttttttccagtTCTACCACTCAACGACTCCA
AATCATTGCAATGAGGGTTTATATCTTGCTGTTGATTTTGCGACACCCTC
CTCTTGATAGATTCAACGTAAGTTCgatttttatacattttgatgaaaat
ataaAGATAGGTTGGTATAGCTACAACTAAGAAGGTAGCTTCCTCAATAG
GCCATAAGTAGACTACAATGAAATATCGACGACGGTCTATAGGCATGAGT
AGGAAAATCAATACTGATCCAATAGTAGATATAATCCATGCTAACATCAA
AGTTAAGTGAACTCTGAATTTAGTGACGTATATTGGGTATACAAGGTTCA
GGTAGATGGATAGGAACCGATCCAGTGTTAATACAGCCAAAATTAATATA
TAAACTGTGAAAAACAAAGTTGTCTGAAAGCACCATACAATCTCTGATGC
TTCCTCAGCTCCAATCACTAAACAAACATGAACAACAATTTTGAATATAC
ATATTGATAACACTGCTATGCTTAAATGTTTCAGGTATAAACGTTGATCC
TCGGCAGTCCGCAAATTCTTGACAgtgaaaagaaaataaagacctAGCAA
GTGAAGCGAGGTTGGTATTAGATAGAAACATGTTCGGATGATTAGACCTT
CTTTTGTTTCATGCCCATCTGCTGACGACAGCATTTTTCTTCAATCCATA
TTTTTCTTGAACTGAAAttatagaaaaaacaaaattaaataaGTCATACG
GAGGGACAATATAGTAGTTTTAAGAGATCATATTGTACTTACTTCATCGT
GCTGAGTACGCTTGTTTTAGTAACTCATTTCTTCTGGCCTCACAATCCTT
AACAATTAATTCAAGGGGTCCAGAATTTAAATTAAAGTGTAAACTCAATC
CTTTAAAGTGCTaagtaaaaaactaaaaaatcttAGGTTAAAGTTCTAAT
GACTTATGTAGGTACATTTTAATCCAAACAGACCCTTCCAGCAGCATTTG
ATTAAAAtcttaaagatattttattttttaatcacaATGCATCAATGTCA
CACATCCACGTCCTAAGGTAGGGTTGGATAAACGTTTGAAATTTCAAGAC
TAAAAACAGTAAGAAATTACAGTAAGAAAATGAAAGGAGATTATATCCAT
ATCTTTTCATCTCTCTGAAAGTTCTAGTCACTTTGAATGATGATTTGAAA
CTGTAGTTGTTATTTGACAACACTATTATTCCCTCTAAACATTGTAATGG
AGAAACAAATCTAAATTATCGCTATTTAAATCATTtacattttttattaa
attttcaaatgccTTTGAGAATAGTATGTTTGAAGTAAGTCAATTTCAAA
TTCCTCTAATTACTGTTCgataaattaaaaaagaatacTTATTGTGTAAA
TTGCCCAATTTTTATTGACATGAAAAAATCATCAACAATTTAACCGATTA
ATACGACCTGCTAgtactgaatgaaaaaaaaatctaatttgatTTTTGTC
ATCAATTAGAATTTTAAGTAATCTCTCTTTTAAGAACTGATTTGTGCTGC
TTATGTCTAGGGCTCTTATCCTTTAATCATTTATCATTAAACTGCACTTG
TACATTACAGTTCTTCTTCACAGAAAgtacaccttttttataagaacgta
aAAAAATTGAAGCCCTTGGATTTtcttaaatctttgtttttagccttaaa
atgtttttatcatgTTTCACCGTTTTAGGAGTATTTTTGtgcatattttt
atgaaattcgttgtattagagtctgcaaagcctgaaagtgttcttaactt
gtttttatatttcccccatcgaagccttatgttcttccCAAGTATaagct
gtttttgtttttaacgtGTAAGCTGTGCCAGCGTGAATAGACtaagacca
ttgagtttcaaggctgaagggctagaggtgaaactttaacccttctcagg
cgaGCGAAAtcgaagctacttatttcccatccagaacgcgccttgaacgc
gccgtaatcatgacgacggattgtatctagcggttcctttgttttggagg
actacattttttaaaatctagcgatagattttagtttcaatctggcgttt
gtgtaaaagctacgagcgggcgttctggatgcgaataaagtggtttcatt
tcccatccaggagtctcgcctctagcccttcgggcttgaaacacAATGAC
TAGGACCATGctcgcacgtgacggttccgtttcgctccgaaacaaaatga
agccattctattggttagaagtgacataacacttgaatgtaaccaataga
atggcttcatttcgtttcgctccgaaaTGGAACCGTCACCTGTGAACATG
GACTAATTCCCACATGGTGGCAAACAAAGAATGTACCATTAAAAATCGTG
ACAAGATATCTACTTTATTGATTCAAATtgagttttccaattttcaacCA
CTCTTATAATCTTATAAGAAAGCCAAGAAAATAACTTTCTGAGGTGattt
ctgttttcaaatttggaaaaatcttcACAAATTGATAATAACTTTCAAAC
ATTGTCAATAACAAGATAATAGTTTTTCACAAGTTAGCCCAAACATGAAT
TATCTAGGTGTGAGATATATCAATATCAAGGAACAACACTCGCTTTTGAA
TATACTGGAGTATTTTTTTAATATGCAAGGTGTTTTTTGTGAAAAGATTC
CAACAAACTAAAGAGAATCTTTGTGATTGATTTTCATACGATTTTTAATT
CTTAAATTCATACGTGAGATATTgataaaaaccaaaatatttcttttctt
tctttctttgaaaACGAAATGATAAAAGATGATTTTTTGGTTAAGAAATC
GGCTTTGAACATAAGAGGAATGATTTTGAAATCCAACAGATGTATTCGCA
AACAAATTCTTTATATCAATTTCAAGTtcagtatatatatatattttttg
aaaagataaaaaaagtaacATTCCAGGAAGAAATGAATATAACTTAcaat
tacttcgaataaaccaCCCTCTTTATTTAACCACCGCTTCGAATAAATTC
CCTTCCTGAAAAGGTTGTCCATTACAGTATATCTTTCTCATTAACACCCC
TCTTGAGCTCTAAACTTGAAAAATTCCAGACCTGATACCCAAGGCTAACT
CGCGCTTAATTCAAGTTtgaaaacgatgaaaatttTGGTTACAAttcacg
ctttttataagaacacataaggcttcgatgaccaaaagttaagaacattt
taaggctttacacaGACaccctaaaacacccaatttcttaggaaaatggt
caaaaatactcacaaatggtgaaaataagaacatgtttaggacattttta
ggcttaaaactcaaaaagttaagaacaaaaAATTCTTACAAAAGAACCAc
tccaaaaacaccaaaactgCCTTTAAATTTGAAGATTGTACAAATGTACa
gaaaattacacaaaaatcttgctacattcaataatgttttaataaaattt
ataattacTATAAAATTGATAATGATAATTTAGTCCagatttttaataaa
agcacCCTATTGCATTAGAAGTACTTACAAAATAAGATTCCATCAAATGG
TGAGAATGTTAAGCGAATGCAATtgcaatgaaaaataacaacagAATATC
ATGCTCAGTGATTTCAAATGTACTGTATAACAAAAAGTCTATTCTTTCCC
ttttataatatcaaaatttttatttaatatttgtttgctCATTTCGCTTC
ACAAAACATTCTGATTGATATAATTCGTTATTTTGAgcccaaaaaaattt
ccctGGCGTCTTCTAAAACCAATTAGATTAATTCAAACtggtctgaaaaa
aaaatcgactGAATTAGaccaaaaaaatgttattaatGAAACTTCAGTAT
TATAGCGAGatgtaaaaaaatttcttggGTTATAAATTTTGAAGATAAAA
GCGACTTGTTTCCTCCtttaaagataaattttcaataaaaaagtaaaaac
ccGGGTGTCTGctaaacataaaaagatcaaGACGCAGTTGTCTCAGTTGA
AACCTCTTATCTAAGctaattcaaaaaaatctttcgtaGTTTTTTGggat
tctttctttttgtttcaatgTTACAATATTGTCTTCAGAAAagcttcttt
taatttgaaaaggGAAATTCAGAACAtgtacttttttttataagaacaaa
aaaacataaggctttgatggtaaaaatattaagaacaagtaaagaacatt
ttaagactttacgGAAcctaaaacactcgatttcttaggaaaatggacaa
aaatactcacaataAAATGGTGAacataagaacatgttaagaacattttt
aggcttaaaactcaaaaagttaagaacatctgaaggcttcaaagattttg
gatgctcttataaaaaatgtgcaccctttaattttttctaacattacgtc
acttttacaACAGCTGATTGGGTGCAAGTGAAGTaatacacccctgcctc
acagccccggtggattttttttcctcagtgggacAAAAAAATCCTATTTA
AATCCCAATGGTgatgaaaattctattgttctaaggttAGAAAGTCAAGC
ggagatggttttggagagcaatttcaaacattgaatttcTAGTGGGGATA
agatcaaagtcaatttcccagtggggctaaagttcaagggtattttccca
ctagggacgaaattttgccaaattttttaGTGGGGCTGGTGTCTCAGCGG
GTCTGGACACAGGGGTGTAGTATTTGTtaggaaaaaaaacataatttcgT
TATATAAGTCTGCAGTGGTGCGTATGATAAATAGGTGATACCCCACTTCA
AATACACTAGAATATATACCTTGATAGATGAGAAAATTTTATCCCCTTTT
TCCTTACTCCATTTGTCGCAATTATTCATTATATTTTTCTTCGTCGTCTA
AAAGATCTTTCCTATTAATTATGTACATCATAGTTATGAGATAAATcatg
ttttaaagatttttttaaagaaatcccttgctcaaacaaaaatttgatat
cCCGGATTTTAAGTTTTGGCACAATGATTTCATACACTCTTATGTATAAA
ATCAAGTTTAGTACTTTTGTATCAAAATTGGCAGCggtcttttttttcaa
tgaataTTAAAATGTCGTTTTAAGTGACTTAATTTTCAGTTTATTTGTTT
GTCATTtcaaataaattaattttcagGCTATTCtcctcaaaaatatcttt
tccAACAGTCTATATTCTTTTTGATATATTGTAAGTAAGggtgaaaattt
ctgaaaatttttgagacGGACTCTTCTTTGTCTAGCATGCTACATTACGG
AAagaaccattcaaaaagtatgtacACTCGAATTTAGGAAAAATTCCCAc
tcccccttgtacgctctGATAGTAACCCACGTTCCGCGTGCGTACGCTTT
TCCGATTGCCCCCTCTAAGAAAGTTTATATTTGTGCTGAAACTTCTTCTA
GATATCAAATAGAAAAGGAGACTAAAGTATAAACTAagctttcatttttc
aaatagaAGAAGGTTagaaaaaaactagaaaaaattgtttaaaaaaattg
caaagcAGAACCCCCTACCCTTACCCTTGGGTACGCTTTCGTAAGCTTTT
TAAAGGACCACCTCAGAGTGTACGTACGTTTTGAATGGTCCCGAAAAGTT
TTTAAACACTTTTCAAACCTCCGACTGTTATTTTTGGTTCGccatttgtt
tgattgtttagCCTAGCCCCTGTTTGTGGCTGTCTAAATCCCGTCGGACA
TCAATATTACCCATCTCCTTTATTTATTTCAACGTAATCTGATCCCCGCA
ATATCTTAAAAAGTCTATCTTTATCACAGATGCTGGGTACAAGAAATGAC
ATGGAAATGTGGACATTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019971-exon-sc0000345-1491911889:31801..31882 | TCONS_00019971-exon-sc0000345-1491911889:31801..31882 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1510915933:31801..31882 | TCONS_00019971-exon-sc0000345-1510915933:31801..31882 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1575043694:31801..31882 | TCONS_00019971-exon-sc0000345-1575043694:31801..31882 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1491911889:34638..35217 | TCONS_00019971-exon-sc0000345-1491911889:34638..35217 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1510915933:34638..35217 | TCONS_00019971-exon-sc0000345-1510915933:34638..35217 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1575043694:34638..35217 | TCONS_00019971-exon-sc0000345-1575043694:34638..35217 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1491911889:35635..35710 | TCONS_00019971-exon-sc0000345-1491911889:35635..35710 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1510915933:35635..35710 | TCONS_00019971-exon-sc0000345-1510915933:35635..35710 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1575043694:35635..35710 | TCONS_00019971-exon-sc0000345-1575043694:35635..35710 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1491911889:40980..41021 | TCONS_00019971-exon-sc0000345-1491911889:40980..41021 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1510915933:40980..41021 | TCONS_00019971-exon-sc0000345-1510915933:40980..41021 | Clytia hemisphaerica | exon |
| TCONS_00019971-exon-sc0000345-1575043694:40980..41021 | TCONS_00019971-exon-sc0000345-1575043694:40980..41021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:31801..41021 + |
Blast
The following BLAST results are available for this feature:
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