TCONS_00019927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019927
Unique NameTCONS_00019927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019927 ID=TCONS_00019927|Name=TCONS_00019927|organism=Clytia hemisphaerica|type=transcript|length=1849bp
TATaataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTTTCCA
ATGTAGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActcaaag
aaatcaaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACATGCTT
GGATGGCTCTGTGATCAACACTTCTGTTGAGaaaTCAGCCAAAGGAGAAG
AACTAGTCAATAAAGTAGCTCAAGAACTTGATGTGAAATCGAAAGATTAT
GTTGGTCTCCTTTTCAATAATGGAACAAGGcaatGGTTGGATATTCATAA
AGATATGAAACATCAGTTGGGAGatTCTAAAGCAGAATTTTTATTTCGGG
TCAAATTCTATGAGCCTGAGCCCAGCAAAATTCAAGAAGATCATTTAAGA
TATTTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGattAAA
ATGCACAGAAGAAGTAATTGCTCAACTTGGTGCATATACTGCACAAgcTG
AAGTAGGAGACTTCAATTTATCAGAGCATGAGCATGATTACTTGAAAGAT
TATGAGTTTGCTGAGAATACCGATATACTTGAAAGAATCAATTTATTGCA
CAAACAACACAGGGGTCAAACACCTTTACAAGCTGAACTTAACTTTTTGG
AAATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTACATGATGCCATG
GATACCAATGGGCATGTAGAGATTGGTATTGCTGCTTTAGGAATAAACAT
CTATCGGGATGGAAAGCGTGAACAGCTTTTCAGATGGCAAAATATGCATG
ACTTCAATTACAACCGAAGAAAATTCACCATTAAACTCAAACAACCAGTG
AGCGACAATGACAATAAGAAGAATTACGTATATTATTTCGAATCTGCTAA
AAGCTGCAAACAATGCTACAAAGTGGCTGTTGAATATCATTCTTTCTTCC
GATTGACAAGACCTGATGCTCCACGAAAACGTGCTGACACCTTGAAAATG
GGATCTAGCTTCAGATACAgTGATCGAACCTTGTATCAACTGAGATACCA
AAAAGGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACGCCAA
GCACAAGGAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGAACCT
GAAGTGCCATTCATTGAACCAACTAAAGTGGCACCACTTGAAGAAGAACC
AGTCCACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGATG
AAGCCAATCCTGATGATGATAACTTTGATCCtgagGAATGGGAAACAGTC
GAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATAT
CGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAG
AACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGAT
GATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATGCC
TGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTG
TGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATAT
AATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATGA
TCCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGA
AGAAATTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAG
AGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGA
AGTTGATGAGGCAAATCCTGATGATGATAAATTTGATCCTAAGGTATTG
Run BLAST on NCBI

transcript from alignment at sc0000339:287901..297720+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019927 ID=TCONS_00019927|Name=TCONS_00019927|organism=Clytia hemisphaerica|type=transcript|length=9820bp|location=Sequence derived from alignment at sc0000339:287901..297720+ (Clytia hemisphaerica)
TATaataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTTTCCA
ATGTAGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActcaaag
aaatcaaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACATGCTT
GGATGGCTCTGTGATCAACACTTCTGTTGAGGTTTGAAGTTTTTATTTTC
CccttgaattttgatttttgtcatCATGATCATGTATAGGCAAATGGAAA
AAAAGCTATTAAATTTATCTCCAAAGTTAGTTTCTTGATTTGATTGGGTt
ggaatatttattttttgtctaCAAGAACAGGTTGGgtttaattaaatttt
aattCCAAATAGTGTGTTATACAGATTGTAAGTGTATATTTAATGGTAAT
TGATTCGGATTAGGCtggacggcaaaccaacaattttttaagtccagcct
tatTTTGACCTCTAAAAGGCCCTTATAAAGTGCACAAAGAATTTTATCAA
TGATAATGTGTTTCTATAACCAATacaacaaagggttttttcgattttag
aaaTCAGCCAAAGGAGAAGAACTAGTCAATAAAGTAGCTCAAGAACTTGA
TGTGAAATCGAAAGATTATGTTGGTCTCCTTTTCAATAATGGAACAAGGG
TAagattttcagaatattttccTATTGTAAAAAGCTTAACATTTTcagga
taatttttttcattttaccaTGCACAGGAGTACCTTtccagaaaattatt
ttgataaacttattttatttttcagcaatGGTTGGATATTCATAAAGATA
TGAAACATCAGTTGGGAGGTTGGTACTTCTTCAGTtttgtttttggaatt
ttttttagtgaaaatctttaaattatGCATAACTTGCCCATTTCATTTCT
CTTTATGAATTATTTAGCAAGGAAGAGGTGTTTTCAAATgtgctttttat
ttatttcagatTCTAAAGCAGAATTTTTATTTCGGGTCAAATTCTATGAG
CCTGAGCCCAGCAAAATTCAAGAAGATCATTTAAGGTTTGTTATTTGTTT
TCCCCTTTCtatacaaaaatgtttttgtttgaccCAGCTTTATATTTTTT
GCTCAAGTCTCAATATATTGACTGAATTATTTACTCAAtgcaaattcaaa
ttcaaaaacaaatgttttttattccttttaatgattttagtgaaacaggt
ttttaaattttggaattcttttgaaacccattaaatttttgtgttttcag
ATATTTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGGTAAA
TAATGTTTATCTAGTTAACAAATTGTGTTGGTATAGGTTTCCATGGAGAA
GTTGGATTACAGCTTATTctaattaatgtaattaaagtATATCCTTTAAT
CATCAAAATTACTTGGCACTTAGCAGCCATATTATTGATTTTAAtgacat
catttttttctttaagattAAAATGCACAGAAGAAGTAATTGCTCAACTT
GGTGCATATACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTG
TCATTATTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTT
TAAAAGTCTTAACTgatatttttcaacatttaaaaaattgagattcCAAT
ACATATATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAac
ttatttgaaatttcaattgatattttttcagcTGAAGTAGGAGACTTCAA
TTTATCAGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGG
TAAGTAAAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCAC
CCTAAAGGAACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCG
ATATACTTGAAAGAATCAATTTATTGCACAAACAACACAGGtattcattt
tcttcatttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGA
TAATGCAATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCA
TAATAATTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCT
GAACTTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGA
CGTACATGATGCCATGGTAGGTATTTTAAGAACAAAATGAAGTTTAAGCA
ACCCAAACAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATTG
AATGTTCTTTTTTTGTCTTTAGGATACCAATGGGCATGTAGAGATTGGTA
TTGCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTT
TTCAGATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCAC
CATTAAACTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAG
TAATTCTATTTTAATTTTGTAAAGCGTCACAtgtttctaaaatattcagt
aattttaaatgttttatttcaGAGCGACAATGACAATAAGAAGAATTACG
TATATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCT
GTTGAATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAA
ACGTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaa
aattgttttcacaaaatatttatttcaccACTAACTCCACTTCTATCTCA
ACTAAAGTGAAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTT
CTAAATTAGAAGGTTGATTTaatgcatgttttttttataacaacatccaa
aaaattttaagccttcggaatcggatgttcttaactttttcatttttaag
cctaagaatgttcttaaaatcttcttaatttctacattttttgagtgttt
ttgtgcaattttgaaagaaatcgagtgttttagagcccatgaagccttaa
aatgttgttaACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCT
tatcttatatagtttgttcttattaaaaaagcgtgtatgttcTTTCTTTT
CAGTGATCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCAC
CTAAAAATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTA
CCTCCTTCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGA
ACCAACTAAAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTAT
TTCTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
GTTTTCTTTAAGATTAAAATGCACAGAAGAAGTAATTGCTCAACTTGGTG
CATATACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTGTCAT
TATTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTTTAAA
AGTCTTAACTgatatttttcaacatttaaaaaattgagattcCAATACAT
ATATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAacttat
ttgaaatttcaattgatattttttcagcTGAAGTAGGAGACTTCAATTTA
TCAGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGGTAAG
TAAAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCACCCTA
AAGGAACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCGATAT
ACTTGAAAGAATCAATTTATTGCACAAACAACACAGGtattcattttctt
catttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGATAAT
GCAATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCATAAT
AATTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCTGAAC
TTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTA
CATGATGCCATGGTAGGTATTTTAAGAACAAATGAAGTTTAAGCAACCCA
AACAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATtaaatgt
tctttttttgtCTTTAGGATACCAATGGGCATGTAGAGATTGGTATTGCT
GCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTTTTCAG
ATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCACCATTA
AACTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAGTAATT
CTATTTTAATTTTGTAAAGCGTCACATGTTTCTAAAACATTCagtaattt
taaatgttttatttcaGAGCGACAATGACAATAAGAAGAATTACGTATAT
TATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCTGTTGA
ATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAAACGTG
CTGACACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaaaattg
ttttcacaaaatatttatttcaccACTAACTCCACTTCTATCTCAACTAA
AGTGAAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTTCTAAA
TTAGAAGGTTGATTTaatgcatgttttttttataacaacatccaaaaatt
ttaagcTTTCGGAATCGgatcttcttaactttttcagttttaagcctaag
aatgttcttaaaatcttcttaatttctacattttttgagtgtttttgtgc
aattttgaaagaaatcgagtgttttagagcccatgaagccttaaaatgtt
gttaACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCTtatctt
atatagtttgttcttattaaaaaagcgtgtatgttcTTTCTTTTCAGTGA
TCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCTAAAA
ATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACCTCCT
TCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAACCAAC
TAAAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTATttctgg
tttttacacaaaaaattGTGGTTGGAATATATGTCTGGAGACTGAAGAct
aaattttcaaatctttttccttTAGTGGCACCACTTGAAGAAGAACCAGT
CCACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGATGAAG
CCAATCCTGATGATGATAACTTTGATCCtgaggtattttttattttgggg
AGCCTTTCGATGCTATTCTACAGTTTACTACAGTTGAATTAGTTCAGTTT
TTTTtgctggaaatttttttatcttttcgtTTTATGAGAAACTTGGATTC
ATAAGAAACTTGAAGAACTTTTTATTAAATCTTCAAAGTCATTGAAAACT
TTATCACTTTCCTCTAGGAATGGGAAACAGTTGAGAAGACGATGCCTGAT
GGTTCGAAGAAGAAATCCCGTCGACGGGTCATCGTTCTTAATGTTGTGAA
GAAACCAAAGAGTGGGAAATCTCCAGTTGAAGAACCAGTTCAATATTATG
AAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATTTGATCCT
AAGGTATATTGTTAGCACAGAATTTCCTTTTCCGAAATCTTCAGTGTGAC
CTGAAGATCTGGAAAACGAtaagattttgctgaaattttgcctACTCTGA
CatgtcttttttttcctttNCGGATTTGGCTTATATTTTGCGCACTCTGA
CATGTCTCTATtcctttttttgcttgagacgAGCTTTGTACGATAGCTTC
GCGTTCTTATCAATTTATAATATACTAAATTTAAGCCCATTCGACTATGA
AATAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTC
AATCAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACGGTCGAGA
ATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTT
CTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACC
AGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATG
ATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaa
acatcGGGGTGACCTGGAGATTGGGGGAACGATCGGATTTGGCTTATATT
TTGCGCACTCTGACATGTCTCTATtcctttttttgcttgagacgAGCTTT
GTACGATAGCTTCGCGTTCTTATCAATTTATAATATACTAAATTTAAGCC
CATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACT
GCATTTTGAACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGAATGG
GAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAG
ACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTC
TAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCC
AATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaattt
cttttttctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGCA
TTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatttctttttttgct
tgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTTATtgagaaaata
ttgaatttaagCCCATTCGACTATGAAATAAGTTGTCAATGTCTTTCACT
GCAATATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATGG
GAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAG
ACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTC
CAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGATGAAGCC
AATCCTGATGATGATAAATATGATCCTGAGGTATTTTTTATTTGGGGAAA
GCctttcaatgcaattttacaGGTGACGAGTTCAGTATTTTTTGCTGGAA
TTTTTTACGTCTTTTcgttttataagaaatttttcaaaatcattttaaac
tTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGA
TGGTTCAAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGA
AGAAACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATAT
GAACAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCC
TAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGAC
CTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGA
CATgtctctatttctttttttgcttgagacgAGCTNGGGGGAACGATCGG
ATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtcctttttttgc
ttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATAT
ACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTT
CATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTC
TTCTTCAGGAATGGGAAACAGTCGAGAATACGATGCCTGATGGTTCGAAG
AAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAA
GAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGG
AAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCG
TTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAGATTC
GGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtctcta
tttctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAG
TTATtgagaaaatattgaatttaagCCCATTCGACTATGAAATAAAAAGT
TGCCAATGTCTTTCACCTGCTTTCACTGCAATATGAAGTCACTCAACTTC
acttactttcgttttcttcagGAATGGGAAACGGTCGAGAATACGATGCC
TGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTG
TGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATAT
AATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATGA
TCCTGAGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttcaggCAA
TTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATTTTTTAC
GTctctttgttttataagaaacttttcaaaatcattttaaactTTCTCAT
TTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAA
AGAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCA
AAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGT
GGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTAT
AGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGC
ATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACT
CAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAAACAGTCG
AGAAGACGATGCCTGATGGTTCGAANGTTGTCAATGTCTTTCACTGCAAT
ATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGGAAAC
GGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTA
ATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTC
GAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCC
TGATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAccttt
cactgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATT
TTTGCTGGAATTTTTTACgtctttttgttttataagaaacttttcaaaat
cattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGA
AGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAACCATTGTTCTT
AATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACC
AGTTCAATATGAAGAAGTGGAAGTTGATGAGGCAAATCCTGATGATGATA
AATTTGATCCTAAGGTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019927-exon-sc0000339-1491911889:287901..288081TCONS_00019927-exon-sc0000339-1491911889:287901..288081Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:287901..288081TCONS_00019927-exon-sc0000339-1510915933:287901..288081Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:287901..288081TCONS_00019927-exon-sc0000339-1575043694:287901..288081Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:288451..288549TCONS_00019927-exon-sc0000339-1491911889:288451..288549Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:288451..288549TCONS_00019927-exon-sc0000339-1510915933:288451..288549Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:288451..288549TCONS_00019927-exon-sc0000339-1575043694:288451..288549Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:288676..288718TCONS_00019927-exon-sc0000339-1491911889:288676..288718Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:288676..288718TCONS_00019927-exon-sc0000339-1510915933:288676..288718Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:288676..288718TCONS_00019927-exon-sc0000339-1575043694:288676..288718Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:288860..288935TCONS_00019927-exon-sc0000339-1491911889:288860..288935Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:288860..288935TCONS_00019927-exon-sc0000339-1510915933:288860..288935Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:288860..288935TCONS_00019927-exon-sc0000339-1575043694:288860..288935Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:289151..289195TCONS_00019927-exon-sc0000339-1491911889:289151..289195Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:289151..289195TCONS_00019927-exon-sc0000339-1510915933:289151..289195Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:289151..289195TCONS_00019927-exon-sc0000339-1575043694:289151..289195Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:289367..289419TCONS_00019927-exon-sc0000339-1491911889:289367..289419Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:289367..289419TCONS_00019927-exon-sc0000339-1510915933:289367..289419Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:289367..289419TCONS_00019927-exon-sc0000339-1575043694:289367..289419Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:289632..289699TCONS_00019927-exon-sc0000339-1491911889:289632..289699Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:289632..289699TCONS_00019927-exon-sc0000339-1510915933:289632..289699Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:289632..289699TCONS_00019927-exon-sc0000339-1575043694:289632..289699Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:289794..289840TCONS_00019927-exon-sc0000339-1491911889:289794..289840Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:289794..289840TCONS_00019927-exon-sc0000339-1510915933:289794..289840Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:289794..289840TCONS_00019927-exon-sc0000339-1575043694:289794..289840Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:289979..290066TCONS_00019927-exon-sc0000339-1491911889:289979..290066Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:289979..290066TCONS_00019927-exon-sc0000339-1510915933:289979..290066Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:289979..290066TCONS_00019927-exon-sc0000339-1575043694:289979..290066Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:290173..290322TCONS_00019927-exon-sc0000339-1491911889:290173..290322Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:290173..290322TCONS_00019927-exon-sc0000339-1510915933:290173..290322Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:290173..290322TCONS_00019927-exon-sc0000339-1575043694:290173..290322Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:290423..290592TCONS_00019927-exon-sc0000339-1491911889:290423..290592Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:290423..290592TCONS_00019927-exon-sc0000339-1510915933:290423..290592Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:290423..290592TCONS_00019927-exon-sc0000339-1575043694:290423..290592Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:291004..291161TCONS_00019927-exon-sc0000339-1491911889:291004..291161Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:291004..291161TCONS_00019927-exon-sc0000339-1510915933:291004..291161Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:291004..291161TCONS_00019927-exon-sc0000339-1575043694:291004..291161Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:293376..293482TCONS_00019927-exon-sc0000339-1491911889:293376..293482Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:293376..293482TCONS_00019927-exon-sc0000339-1510915933:293376..293482Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:293376..293482TCONS_00019927-exon-sc0000339-1575043694:293376..293482Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:295959..296144TCONS_00019927-exon-sc0000339-1491911889:295959..296144Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:295959..296144TCONS_00019927-exon-sc0000339-1510915933:295959..296144Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:295959..296144TCONS_00019927-exon-sc0000339-1575043694:295959..296144Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:296422..296607TCONS_00019927-exon-sc0000339-1491911889:296422..296607Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:296422..296607TCONS_00019927-exon-sc0000339-1510915933:296422..296607Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:296422..296607TCONS_00019927-exon-sc0000339-1575043694:296422..296607Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1491911889:297529..297720TCONS_00019927-exon-sc0000339-1491911889:297529..297720Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1510915933:297529..297720TCONS_00019927-exon-sc0000339-1510915933:297529..297720Clytia hemisphaericaexon
TCONS_00019927-exon-sc0000339-1575043694:297529..297720TCONS_00019927-exon-sc0000339-1575043694:297529..297720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:287901..297720 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.40558	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00019927 vs. Swiss-Prot (Human)
Match: E41L2 (Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.836e-69
Identity = 141/351 (40.17%), Postives = 207/351 (58.97%), Query Frame = 2 
Query:   71 NSSAAETNSKKSKKKSGPQYECVITCLDGSVINTSVEKSAKGEELVNKVAQELDVKSKDYVGLLFNNGTRQ--WLDIHKDMKHQLGDSKAEFLFRVKFYEPEPSKIQEDHLRYLLYLQIREDLSEKRLKCTEEVIAQLGAYTAQAEVGDFNLSEHEHDYLKDYEFA--ENTDILERINLLHKQHRGQTPLQAELNFLEIAKKIPRYGVDVHDAMDTNG-HVEIGIAALGINIYRDGKREQLFRWQNMHDFNYNRRKFTIKLKQPVSDNDNKKNYVYYFESAKSCKQCYKVAVEYHSFFRLTRPDAPRKRADTLKMGSSFRYSDRTLYQLRYQKGDEAPKNAANFKRTPSTR 1108
            N   AE  S+K  KK+    +C +T LDG+  +  +EK AKG+ L +KV + L++  KDY GLLF     Q  WLD  K++K QL +    F F VKFY P+PS++ ED  RY L LQ+R+D++  RL C+    A LG+YT QAE+GD++  EH    L +++FA  +  ++ E++  LHK HRG +P QA+  FLE AK++  YGVD+H A D+ G  +++G+ A G+ IY+D  R   F W  +   +Y R  F IK++ P      +    +   + ++ K+ +KV VE+H+F+RL  P+ P K A  L +GS FRYS RT  Q R Q      + A +F+RT S R
Sbjct:  200 NELKAEKASQKVTKKT-KTVQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPEQKNWLDPAKEIKRQLRNLPWLFTFNVKFYPPDPSQLTEDITRYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSIDLSEFQFAPTQTKELEEKVAELHKTHRGLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANGLLIYKDRLRINRFAWPKILKISYKRSNFYIKVR-PAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRLVSPEQPPK-AKFLTLGSKFRYSGRTQAQTR-QASTLIDRPAPHFERTSSKR 546
The following BLAST results are available for this feature:
BLAST of TCONS_00019927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E41L21.836e-6940.17Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2... [more]
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