TCONS_00019926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019926
Unique NameTCONS_00019926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019926 ID=TCONS_00019926|Name=TCONS_00019926|organism=Clytia hemisphaerica|type=transcript|length=2239bp
TAGTTATaataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTT
TCCAATGTAGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActc
aaagaaatcaaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACAT
GCTTGGATGGCTCTGTGATCAACACTTCTGTTGAGaaaTCAGCCAAAGGA
GAAGAACTAGTCAATAAAGTAGCTCAAGAACTTGATGTGAAATCGAAAGA
TTATGTTGGTCTCCTTTTCAATAATGGAACAAGGcaatGGTTGGATATTC
ATAAAGATATGAAACATCAGTTGGGAGatTCTAAAGCAGAATTTTTATTT
CGGGTCAAATTCTATGAGCCTGAGCCCAGCAAAATTCAAGAAGATCATTT
AAGATATTTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGat
tAAAATGCACAGAAGAAGTAATTGCTCAACTTGGTGCATATACTGCACAA
gcTGAAGTAGGAGACTTCAATTTATCAGAGCATGAGCATGATTACTTGAA
AGATTATGAGTTTGCTGAGAATACCGATATACTTGAAAGAATCAATTTAT
TGCACAAACAACACAGGGGTCAAACACCTTTACAAGCTGAACTTAACTTT
TTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTACATGATGC
CATGGATACCAATGGGCATGTAGAGATTGGTATTGCTGCTTTAGGAATAA
ACATCTATCGGGATGGAAAGCGTGAACAGCTTTTCAGATGGCAAAATATG
CATGACTTCAATTACAACCGAAGAAAATTCACCATTAAACTCAAACAACC
AGTGAGCGACAATGACAATAAGAAGAATTACGTATATTATTTCGAATCTG
CTAAAAGCTGCAAACAATGCTACAAAGTGGCTGTTGAATATCATTCTTTC
TTCCGATTGACAAGACCTGATGCTCCACGAAAACGTGCTGACACCTTGAA
AATGGGATCTAGCTTCAGATACAgTGATCGAACCTTGTATCAACTGAGAT
ACCAAAAAGGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACG
CCAAGCACAAGGAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGA
ACCTGAAGTGCCATTCATTGAACCAACTAAAGTGGCACCACTTGAAGAAG
AACCAGTCCACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTC
GATGAAGCCAATCCTGATGATGATAACTTTGATCCtgagGAATGGGAAAC
AGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTA
ATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTC
GAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCC
TGATGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGA
TGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAAT
GTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCA
ATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAAT
ATGATCCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCA
AAGAAGAAATTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACC
AAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAG
TGGAAGTTGATGAGGCAAATCCTGATGATGATAAATTTGATCCTAAGGAA
TGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCG
CCGACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATG
AGGAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTT
GAAATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAgagTG
GGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGAC
GGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTG
AATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCC
AACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:287897..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019926 ID=TCONS_00019926|Name=TCONS_00019926|organism=Clytia hemisphaerica|type=transcript|length=10830bp|location=Sequence derived from alignment at sc0000339:287897..298726+ (Clytia hemisphaerica)
TAGTTATaataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTT
TCCAATGTAGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActc
aaagaaatcaaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACAT
GCTTGGATGGCTCTGTGATCAACACTTCTGTTGAGGTTTGAAGTTTTTAT
TTTCCccttgaattttgatttttgtcatCATGATCATGTATAGGCAAATG
GAAAAAAAGCTATTAAATTTATCTCCAAAGTTAGTTTCTTGATTTGATTG
GGTtggaatatttattttttgtctaCAAGAACAGGTTGGgtttaattaaa
ttttaattCCAAATAGTGTGTTATACAGATTGTAAGTGTATATTTAATGG
TAATTGATTCGGATTAGGCtggacggcaaaccaacaattttttaagtcca
gccttatTTTGACCTCTAAAAGGCCCTTATAAAGTGCACAAAGAATTTTA
TCAATGATAATGTGTTTCTATAACCAATacaacaaagggttttttcgatt
ttagaaaTCAGCCAAAGGAGAAGAACTAGTCAATAAAGTAGCTCAAGAAC
TTGATGTGAAATCGAAAGATTATGTTGGTCTCCTTTTCAATAATGGAACA
AGGGTAagattttcagaatattttccTATTGTAAAAAGCTTAACATTTTc
aggataatttttttcattttaccaTGCACAGGAGTACCTTtccagaaaat
tattttgataaacttattttatttttcagcaatGGTTGGATATTCATAAA
GATATGAAACATCAGTTGGGAGGTTGGTACTTCTTCAGTtttgtttttgg
aattttttttagtgaaaatctttaaattatGCATAACTTGCCCATTTCAT
TTCTCTTTATGAATTATTTAGCAAGGAAGAGGTGTTTTCAAATgtgcttt
ttatttatttcagatTCTAAAGCAGAATTTTTATTTCGGGTCAAATTCTA
TGAGCCTGAGCCCAGCAAAATTCAAGAAGATCATTTAAGGTTTGTTATTT
GTTTTCCCCTTTCtatacaaaaatgtttttgtttgaccCAGCTTTATATT
TTTTGCTCAAGTCTCAATATATTGACTGAATTATTTACTCAAtgcaaatt
caaattcaaaaacaaatgttttttattccttttaatgattttagtgaaac
aggtttttaaattttggaattcttttgaaacccattaaatttttgtgttt
tcagATATTTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGG
TAAATAATGTTTATCTAGTTAACAAATTGTGTTGGTATAGGTTTCCATGG
AGAAGTTGGATTACAGCTTATTctaattaatgtaattaaagtATATCCTT
TAATCATCAAAATTACTTGGCACTTAGCAGCCATATTATTGATTTTAAtg
acatcatttttttctttaagattAAAATGCACAGAAGAAGTAATTGCTCA
ACTTGGTGCATATACTGCACAAggtaaatttgttttaaaacctTTGGCAA
TGTGTCATTATTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAA
AGTTTAAAAGTCTTAACTgatatttttcaacatttaaaaaattgagattc
CAATACATATATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTA
AAacttatttgaaatttcaattgatattttttcagcTGAAGTAGGAGACT
TCAATTTATCAGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCT
GAGGTAAGTAAAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAA
TCACCCTAAAGGAACTCTTTAAtgaaaaagtcattttcttACCATAGAAT
ACCGATATACTTGAAAGAATCAATTTATTGCACAAACAACACAGGtattc
attttcttcatttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCAC
TGGATAATGCAATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTC
TTCATAATAATTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACA
AGCTGAACTTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAG
TGGACGTACATGATGCCATGGTAGGTATTTTAAGAACAAAATGAAGTTTA
AGCAACCCAAACAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAAT
ATTGAATGTTCTTTTTTTGTCTTTAGGATACCAATGGGCATGTAGAGATT
GGTATTGCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACA
GCTTTTCAGATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAAT
TCACCATTAAACTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTG
AAAGTAATTCTATTTTAATTTTGTAAAGCGTCACAtgtttctaaaatatt
cagtaattttaaatgttttatttcaGAGCGACAATGACAATAAGAAGAAT
TACGTATATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGT
GGCTGTTGAATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCAC
GAAAACGTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATACAggtat
aaaaaattgttttcacaaaatatttatttcaccACTAACTCCACTTCTAT
CTCAACTAAAGTGAAAACATTGTCACTAAATCACTCAACTCAATTTTTAT
GTTTCTAAATTAGAAGGTTGATTTaatgcatgttttttttataacaacat
ccaaaaaattttaagccttcggaatcggatgttcttaactttttcatttt
taagcctaagaatgttcttaaaatcttcttaatttctacattttttgagt
gtttttgtgcaattttgaaagaaatcgagtgttttagagcccatgaagcc
ttaaaatgttgttaACTTGTTCTTACTTAACACTTTGGTCATCGAATATG
TTCTtatcttatatagtttgttcttattaaaaaagcgtgtatgttcTTTC
TTTTCAGTGATCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAA
GCACCTAAAAATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGAC
ATTACCTCCTTCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCA
TTGAACCAACTAAAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGC
TTATTTCTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTGTTTTCTTTAAGATTAAAATGCACAGAAGAAGTAATTGCTCAACTT
GGTGCATATACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTG
TCATTATTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTT
TAAAAGTCTTAACTgatatttttcaacatttaaaaaattgagattcCAAT
ACATATATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAac
ttatttgaaatttcaattgatattttttcagcTGAAGTAGGAGACTTCAA
TTTATCAGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGG
TAAGTAAAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCAC
CCTAAAGGAACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCG
ATATACTTGAAAGAATCAATTTATTGCACAAACAACACAGGtattcattt
tcttcatttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGA
TAATGCAATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCA
TAATAATTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCT
GAACTTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGA
CGTACATGATGCCATGGTAGGTATTTTAAGAACAAATGAAGTTTAAGCAA
CCCAAACAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATtaa
atgttctttttttgtCTTTAGGATACCAATGGGCATGTAGAGATTGGTAT
TGCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTTT
TCAGATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCACC
ATTAAACTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAGT
AATTCTATTTTAATTTTGTAAAGCGTCACATGTTTCTAAAACATTCagta
attttaaatgttttatttcaGAGCGACAATGACAATAAGAAGAATTACGT
ATATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCTG
TTGAATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAAA
CGTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaaa
attgttttcacaaaatatttatttcaccACTAACTCCACTTCTATCTCAA
CTAAAGTGAAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTTC
TAAATTAGAAGGTTGATTTaatgcatgttttttttataacaacatccaaa
aattttaagcTTTCGGAATCGgatcttcttaactttttcagttttaagcc
taagaatgttcttaaaatcttcttaatttctacattttttgagtgttttt
gtgcaattttgaaagaaatcgagtgttttagagcccatgaagccttaaaa
tgttgttaACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCTta
tcttatatagtttgttcttattaaaaaagcgtgtatgttcTTTCTTTTCA
GTGATCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCT
AAAAATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACC
TCCTTCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAAC
CAACTAAAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTATtt
ctggtttttacacaaaaaattGTGGTTGGAATATATGTCTGGAGACTGAA
GActaaattttcaaatctttttccttTAGTGGCACCACTTGAAGAAGAAC
CAGTCCACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGAT
GAAGCCAATCCTGATGATGATAACTTTGATCCtgaggtattttttatttt
ggggAGCCTTTCGATGCTATTCTACAGTTTACTACAGTTGAATTAGTTCA
GTTTTTTTtgctggaaatttttttatcttttcgtTTTATGAGAAACTTGG
ATTCATAAGAAACTTGAAGAACTTTTTATTAAATCTTCAAAGTCATTGAA
AACTTTATCACTTTCCTCTAGGAATGGGAAACAGTTGAGAAGACGATGCC
TGATGGTTCGAAGAAGAAATCCCGTCGACGGGTCATCGTTCTTAATGTTG
TGAAGAAACCAAAGAGTGGGAAATCTCCAGTTGAAGAACCAGTTCAATAT
TATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATTTGA
TCCTAAGGTATATTGTTAGCACAGAATTTCCTTTTCCGAAATCTTCAGTG
TGACCTGAAGATCTGGAAAACGAtaagattttgctgaaattttgcctACT
CTGACatgtcttttttttcctttNCGGATTTGGCTTATATTTTGCGCACT
CTGACATGTCTCTATtcctttttttgcttgagacgAGCTTTGTACGATAG
CTTCGCGTTCTTATCAATTTATAATATACTAAATTTAAGCCCATTCGACT
ATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGA
ACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACGGTC
GAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATAT
CGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAG
AACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGAT
GATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttct
aaaaacatcGGGGTGACCTGGAGATTGGGGGAACGATCGGATTTGGCTTA
TATTTTGCGCACTCTGACATGTCTCTATtcctttttttgcttgagacgAG
CTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATATACTAAATTTA
AGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTT
CACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGA
ATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCC
GTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAA
TCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGA
AGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcaga
atttcttttttctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGAT
CGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatttctttttt
tgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTTATtgagaa
aatattgaatttaagCCCATTCGACTATGAAATAAGTTGTCAATGTCTTT
CACTGCAATATGAAGTCACTCAACTTCacttactttcgttttcttcagGA
ATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCC
GTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAA
TCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGATGA
AGCCAATCCTGATGATGATAAATATGATCCTGAGGTATTTTTTATTTGGG
GAAAGCctttcaatgcaattttacaGGTGACGAGTTCAGTATTTTTTGCT
GGAATTTTTTACGTCTTTTcgttttataagaaatttttcaaaatcatttt
aaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGC
CTGATGGTTCAAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTT
GTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCA
ATATGAACAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTG
ATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGG
TGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACT
CTGACATgtctctatttctttttttgcttgagacgAGCTNGGGGGAACGA
TCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtccttttt
ttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATA
ATATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGT
CTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTT
CGTCTTCTTCAGGAATGGGAAACAGTCGAGAATACGATGCCTGATGGTTC
GAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAAC
CCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAA
GTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGT
ATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAG
ATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtc
tctatttctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTC
TTAGTTATtgagaaaatattgaatttaagCCCATTCGACTATGAAATAAA
AAGTTGCCAATGTCTTTCACCTGCTTTCACTGCAATATGAAGTCACTCAA
CTTCacttactttcgttttcttcagGAATGGGAAACGGTCGAGAATACGA
TGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAAT
GTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCA
ATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAAT
ATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttcag
gCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATTTT
TTACGTctctttgttttataagaaacttttcaaaatcattttaaactTTC
TCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGT
TCAAAGAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAA
ACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAG
AAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAG
GTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATT
GTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTC
TACTCAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAAACA
GTCGAGAAGACGATGCCTGATGGTTCGAANGTTGTCAATGTCTTTCACTG
CAATATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGG
AAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGA
CGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCC
AGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCA
ATCCTGATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAc
ctttcactgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAG
TATTTTTGCTGGAATTTTTTACgtctttttgttttataagaaacttttca
aaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAG
AAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAACCATTGT
TCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAG
AACCAGTTCAATATGAAGAAGTGGAAGTTGATGAGGCAAATCCTGATGAT
GATAAATTTGATCCTAAGGTATTGTTTGCACAGAAtttctttctctctct
ctcacTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCA
GGTCTCAAACGAGCCAGATCTACTcaaatttacaatatttttcaaatatc
tcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAG
AAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAAACCAAA
GAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGG
AAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTATAG
TTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGCAT
CTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCA
AAtttacattatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAG
AAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCATTGT
TCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGTCAG
AAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAAGCC
AACCCTCAAGATGATCAATTTGATCCAAAAGTAAATAATTGATGTGACTT
TCTTCAGTTTCTCTTACTTCATTACCTATGCCACATTTTGACATCTTgtt
ttttacaatttcttaacTTAACTTGATACATCACATTTTAGGCTTCCCAg
gcagtcacaacttaaccatcttttaattttttttaggagTGGGAAGTTGT
GGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTCGTG
TCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAAAAT
GAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAACACAAGA
AGATGATGACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019926-exon-sc0000339-1491911889:287897..288081TCONS_00019926-exon-sc0000339-1491911889:287897..288081Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:287897..288081TCONS_00019926-exon-sc0000339-1510915933:287897..288081Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:287897..288081TCONS_00019926-exon-sc0000339-1575043694:287897..288081Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:288451..288549TCONS_00019926-exon-sc0000339-1491911889:288451..288549Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:288451..288549TCONS_00019926-exon-sc0000339-1510915933:288451..288549Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:288451..288549TCONS_00019926-exon-sc0000339-1575043694:288451..288549Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:288676..288718TCONS_00019926-exon-sc0000339-1491911889:288676..288718Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:288676..288718TCONS_00019926-exon-sc0000339-1510915933:288676..288718Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:288676..288718TCONS_00019926-exon-sc0000339-1575043694:288676..288718Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:288860..288935TCONS_00019926-exon-sc0000339-1491911889:288860..288935Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:288860..288935TCONS_00019926-exon-sc0000339-1510915933:288860..288935Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:288860..288935TCONS_00019926-exon-sc0000339-1575043694:288860..288935Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:289151..289195TCONS_00019926-exon-sc0000339-1491911889:289151..289195Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:289151..289195TCONS_00019926-exon-sc0000339-1510915933:289151..289195Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:289151..289195TCONS_00019926-exon-sc0000339-1575043694:289151..289195Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:289367..289419TCONS_00019926-exon-sc0000339-1491911889:289367..289419Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:289367..289419TCONS_00019926-exon-sc0000339-1510915933:289367..289419Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:289367..289419TCONS_00019926-exon-sc0000339-1575043694:289367..289419Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:289632..289699TCONS_00019926-exon-sc0000339-1491911889:289632..289699Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:289632..289699TCONS_00019926-exon-sc0000339-1510915933:289632..289699Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:289632..289699TCONS_00019926-exon-sc0000339-1575043694:289632..289699Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:289794..289840TCONS_00019926-exon-sc0000339-1491911889:289794..289840Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:289794..289840TCONS_00019926-exon-sc0000339-1510915933:289794..289840Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:289794..289840TCONS_00019926-exon-sc0000339-1575043694:289794..289840Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:289979..290066TCONS_00019926-exon-sc0000339-1491911889:289979..290066Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:289979..290066TCONS_00019926-exon-sc0000339-1510915933:289979..290066Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:289979..290066TCONS_00019926-exon-sc0000339-1575043694:289979..290066Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:290173..290322TCONS_00019926-exon-sc0000339-1491911889:290173..290322Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:290173..290322TCONS_00019926-exon-sc0000339-1510915933:290173..290322Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:290173..290322TCONS_00019926-exon-sc0000339-1575043694:290173..290322Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:290423..290592TCONS_00019926-exon-sc0000339-1491911889:290423..290592Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:290423..290592TCONS_00019926-exon-sc0000339-1510915933:290423..290592Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:290423..290592TCONS_00019926-exon-sc0000339-1575043694:290423..290592Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:291004..291161TCONS_00019926-exon-sc0000339-1491911889:291004..291161Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:291004..291161TCONS_00019926-exon-sc0000339-1510915933:291004..291161Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:291004..291161TCONS_00019926-exon-sc0000339-1575043694:291004..291161Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:293376..293482TCONS_00019926-exon-sc0000339-1491911889:293376..293482Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:293376..293482TCONS_00019926-exon-sc0000339-1510915933:293376..293482Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:293376..293482TCONS_00019926-exon-sc0000339-1575043694:293376..293482Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:295959..296144TCONS_00019926-exon-sc0000339-1491911889:295959..296144Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:295959..296144TCONS_00019926-exon-sc0000339-1510915933:295959..296144Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:295959..296144TCONS_00019926-exon-sc0000339-1575043694:295959..296144Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:297190..297375TCONS_00019926-exon-sc0000339-1491911889:297190..297375Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:297190..297375TCONS_00019926-exon-sc0000339-1510915933:297190..297375Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:297190..297375TCONS_00019926-exon-sc0000339-1575043694:297190..297375Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:297529..297714TCONS_00019926-exon-sc0000339-1491911889:297529..297714Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:297529..297714TCONS_00019926-exon-sc0000339-1510915933:297529..297714Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:297529..297714TCONS_00019926-exon-sc0000339-1575043694:297529..297714Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:298179..298376TCONS_00019926-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:298179..298376TCONS_00019926-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:298179..298376TCONS_00019926-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1491911889:298533..298726TCONS_00019926-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1510915933:298533..298726TCONS_00019926-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019926-exon-sc0000339-1575043694:298533..298726TCONS_00019926-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:287897..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.46205e-09	2.45778	19.5192	19.6095	10.4347	32.8821	4.35736e-05	1.51166	3.57714	0.325765	0.0862818	1.5981e-06	0	0	2.4744e-09	4.6241e-10	0	0	1.64466	1.41721e-08	0.00451822	4.08805e-05	13.237	14.3987	1.2756e-07	2.96245e-06	7.18733	0.00392728
Blast
[Close]
BLAST of TCONS_00019926 vs. Swiss-Prot (Human)
Match: E41L2 (Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.982e-68
Identity = 141/351 (40.17%), Postives = 207/351 (58.97%), Query Frame = 3 
Query:   75 NSSAAETNSKKSKKKSGPQYECVITCLDGSVINTSVEKSAKGEELVNKVAQELDVKSKDYVGLLFNNGTRQ--WLDIHKDMKHQLGDSKAEFLFRVKFYEPEPSKIQEDHLRYLLYLQIREDLSEKRLKCTEEVIAQLGAYTAQAEVGDFNLSEHEHDYLKDYEFA--ENTDILERINLLHKQHRGQTPLQAELNFLEIAKKIPRYGVDVHDAMDTNG-HVEIGIAALGINIYRDGKREQLFRWQNMHDFNYNRRKFTIKLKQPVSDNDNKKNYVYYFESAKSCKQCYKVAVEYHSFFRLTRPDAPRKRADTLKMGSSFRYSDRTLYQLRYQKGDEAPKNAANFKRTPSTR 1112
            N   AE  S+K  KK+    +C +T LDG+  +  +EK AKG+ L +KV + L++  KDY GLLF     Q  WLD  K++K QL +    F F VKFY P+PS++ ED  RY L LQ+R+D++  RL C+    A LG+YT QAE+GD++  EH    L +++FA  +  ++ E++  LHK HRG +P QA+  FLE AK++  YGVD+H A D+ G  +++G+ A G+ IY+D  R   F W  +   +Y R  F IK++ P      +    +   + ++ K+ +KV VE+H+F+RL  P+ P K A  L +GS FRYS RT  Q R Q      + A +F+RT S R
Sbjct:  200 NELKAEKASQKVTKKT-KTVQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPEQKNWLDPAKEIKRQLRNLPWLFTFNVKFYPPDPSQLTEDITRYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSIDLSEFQFAPTQTKELEEKVAELHKTHRGLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANGLLIYKDRLRINRFAWPKILKISYKRSNFYIKVR-PAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRLVSPEQPPK-AKFLTLGSKFRYSGRTQAQTR-QASTLIDRPAPHFERTSSKR 546
The following BLAST results are available for this feature:
BLAST of TCONS_00019926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E41L21.982e-6840.17Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2... [more]
back to top