TCONS_00019845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019845
Unique NameTCONS_00019845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019845 ID=TCONS_00019845|Name=TCONS_00019845|organism=Clytia hemisphaerica|type=transcript|length=736bp
CACAAACTTAGACAAATTAATTTCTCTAAGAAAGAAGTCAAAAAACCCGA
CTATTGGATATCTAAACATAAATTCTTTTCGTAACAAATCTGGCCATCTT
CTTGATATCTTAGTTAATGCAGAAACAAAATTAGATGCTGCCTCAACCAA
CGCCTCCTTGAAAAAACCCAATTTTAAGCTTCCTTAACGAGTTgatgtaa
ataaaaaatcagaGGGTATGTTGGTGTATATAAGAGAGGGTCTTGCATCT
CGAAAACTGAAGATATACAGTAGCAAAGGCATACAGATTATTATATTTGA
ATTACGGCTTAAGAAAAACAGTTGGCTCATTCTAGCCatatacaaaaatc
caaaaattaagattaaGCAATTCATTGAAAAACTGTCGGACCTCATGAAT
GAATTCTTAGGAAGATTTGATCGTTTATTAGTATTAGGTGATTTCAACAC
TGAACCGTCTCAAACTGACTTAAAACAATTCATGGATAGATATAACTTAT
CAAATTTGATCCAGCAAAAAACTTGCTTCAAAAAACCAGAGGGGACTTGC
ATTGACCTTATTTTAACAAACTGCAAGTCTAGCCTTCAACATTCCCATGC
TGTTGAGACTGATTTAAGTGATTTTCATCTAATGCCAATAACTATGTTTA
GAGAAGGCTACGAAAGTCTACCTCCACAAACCATTCAATATCgagatttt
tctaaatttaaaggCTTTGATTTTAATTTAGAACTT
Run BLAST on NCBI

protein sequence of TCONS_00019845-protein

>TCONS_00019845-protein ID=TCONS_00019845-protein|Name=TCONS_00019845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MLVYIREGLASRKLKIYSSKGIQIIIFELRLKKNSWLILAIYKNPKIKIK
QFIEKLSDLMNEFLGRFDRLLVLGDFNTEPSQTDLKQFMDRYNLSNLIQQ
KTCFKKPEGTCIDLILTNCKSSLQHSHAVETDLSDFHLMPITMFREGYES
LPPQTIQYRDFSKFKGFDFNLEL
Run BLAST on NCBI

transcript from alignment at sc0000338:21752..22487

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019845 ID=TCONS_00019845|Name=TCONS_00019845|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at sc0000338:21752..22487 (Clytia hemisphaerica)
AAGTTCTAAATTAAAATCAAAGcctttaaatttagaaaaatctcGATATT
GAATGGTTTGTGGAGGTAGACTTTCGTAGCCTTCTCTAAACATAGTTATT
GGCATTAGATGAAAATCACTTAAATCAGTCTCAACAGCATGGGAATGTTG
AAGGCTAGACTTGCAGTTTGTTAAAATAAGGTCAATGCAAGTCCCCTCTG
GTTTTTTGAAGCAAGTTTTTTGCTGGATCAAATTTGATAAGTTATATCTA
TCCATGAATTGTTTTAAGTCAGTTTGAGACGGTTCAGTGTTGAAATCACC
TAATACTAATAAACGATCAAATCTTCCTAAGAATTCATTCATGAGGTCCG
ACAGTTTTTCAATGAATTGCttaatcttaatttttggatttttgtatatG
GCTAGAATGAGCCAACTGTTTTTCTTAAGCCGTAATTCAAATATAATAAT
CTGTATGCCTTTGCTACTGTATATCTTCAGTTTTCGAGATGCAAGACCCT
CTCTTATATACACCAACATACCCtctgattttttatttacatcAACTCGT
TAAGGAAGCTTAAAATTGGGTTTTTTCAAGGAGGCGTTGGTTGAGGCAGC
ATCTAATTTTGTTTCTGCATTAACTAAGATATCAAGAAGATGGCCAGATT
TGTTACGAAAAGAATTTATGTTTAGATATCCAATAGTCGGGTTTTTTGAC
TTCTTTCTTAGAGAAATTAATTTGTCTAAGTTTGTG

Coding sequence (CDS) from alignment at sc0000338:21752..22487

>TCONS_00019845 ID=TCONS_00019845|Name=TCONS_00019845|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000338:21752..22487 (Clytia hemisphaerica)
AAGTTCTAAATTAAAATCAAAGcctttaaatttagaaaaatctcGATATT
GAATGGTTTGTGGAGGTAGACTTTCGTAGCCTTCTCTAAACATAGTTATT
GGCATTAGATGAAAATCACTTAAATCAGTCTCAACAGCATGGGAATGTTG
AAGGCTAGACTTGCAGTTTGTTAAAATAAGGTCAATGCAAGTCCCCTCTG
GTTTTTTGAAGCAAGTTTTTTGCTGGATCAAATTTGATAAGTTATATCTA
TCCATGAATTGTTTTAAGTCAGTTTGAGACGGTTCAGTGTTGAAATCACC
TAATACTAATAAACGATCAAATCTTCCTAAGAATTCATTCATGAGGTCCG
ACAGTTTTTCAATGAATTGCttaatcttaatttttggatttttgtatatG
GCTAGAATGAGCCAACTGTTTTTCTTAAGCCGTAATTCAAATATAATAAT
CTGTATGCCTTTGCTACTGTATATCTTCAGTTTTCGAGATGCAAGACCCT
CTCTTATATACACCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011164XLOC_011164Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019845-exon-sc0000338-1491911889:21752..22487TCONS_00019845-exon-sc0000338-1491911889:21752..22487Clytia hemisphaericaexon
TCONS_00019845-exon-sc0000338-1510915933:21752..22487TCONS_00019845-exon-sc0000338-1510915933:21752..22487Clytia hemisphaericaexon
TCONS_00019845-exon-sc0000338-1575043694:21752..22487TCONS_00019845-exon-sc0000338-1575043694:21752..22487Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019845-proteinTCONS_00019845-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:21752..22487 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.403921	0.787774	0.22867	0.820299	0.54471	0.502177	0.519304	0.243083	0.283647	0.562148	0.409226	0.358679	0.17909	0.604458	0.34404	0.164092	0.909666	1.39857	0.143126	0.224656	1.04142	0.857199	0.540316	0.491226	0.289115	1.09662	1.29233	0.59109	0.22416	0.532896
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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