TCONS_00019844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019844
Unique NameTCONS_00019844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019844 ID=TCONS_00019844|Name=TCONS_00019844|organism=Clytia hemisphaerica|type=transcript|length=221bp
TTCGAATCCAACTATCTTGTTGCAAACCCAGGAAAATTCCAAATGATGCT
ATTaggaaaaaatattgataacTCTAATATTTCAATCAAGTATAAGAATG
TTACTACAAAAGCAACAAATGCAACAAATTCAGTTTTGCTACTAGGAatt
atttttgatgagaaaCTGAATTTTAACCAACATGTAGACAAAATATGTTC
TACTGTAAGTAGGAATACTAC
Run BLAST on NCBI

transcript from alignment at sc0000338:20021..20241

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019844 ID=TCONS_00019844|Name=TCONS_00019844|organism=Clytia hemisphaerica|type=transcript|length=221bp|location=Sequence derived from alignment at sc0000338:20021..20241 (Clytia hemisphaerica)
GTAGTATTCCTACTTACAGTAGAACATATTTTGTCTACATGTTGGTTAAA
ATTCAGtttctcatcaaaaataatTCCTAGTAGCAAAACTGAATTTGTTG
CATTTGTTGCTTTTGTAGTAACATTCTTATACTTGATTGAAATATTAGAg
ttatcaatattttttcctAATAGCATCATTTGGAATTTTCCTGGGTTTGC
AACAAGATAGTTGGATTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011163XLOC_011163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019844-exon-sc0000338-1491911889:20021..20241TCONS_00019844-exon-sc0000338-1491911889:20021..20241Clytia hemisphaericaexon
TCONS_00019844-exon-sc0000338-1510915933:20021..20241TCONS_00019844-exon-sc0000338-1510915933:20021..20241Clytia hemisphaericaexon
TCONS_00019844-exon-sc0000338-1575043694:20021..20241TCONS_00019844-exon-sc0000338-1575043694:20021..20241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:20021..20241 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3401	8.3928	1.37906	0	0	0	1.56591	0	1.02637	0	0.508877	1.62234	0	0	0	0.742204	0	1.43454	6.18419	0	10.0649	4.31043	3.46704	3.01696	0	0	4.07573	0	2.70373	3.53476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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