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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019838 ID=TCONS_00019838|Name=TCONS_00019838|organism=Clytia hemisphaerica|type=transcript|length=611bp
TTCTCGATAGATCATTTGATTCGGACATCGAAATGTCTGAGGAAGATTTC
GAACTGTCAGATTCTGAAGACATGAAAGAGCCATACAGCGAACCTGAAGT
TATATACGATTCTGACGTTGAAATCATTGACATGTATGATATTGATCCCA
ATTGGAGGCTCCTGTGTATTGCGGATGTGGAGGCAGACCCCGTGTGCAAA
CGTCTAGATAAGTTGATAAGGGATGGTCATATCAGAAAAGACCAGATATT
TTACAAGTACTTAGACGACATGACAAGCATCTTTTACGACAGCAAGCATC
CTTATGATAAAGACGTTATCGAATTCTTCACATCAATCCTTCATCACGGC
GGGGAAAGCACATACAACATCGTTCGTGGTCCGATGCGACAAGGAAACGA
GAAAACAAAATCCAATGAAGTACGAATGAATTTTGGTGGGCCAGGGATCG
AGACAATTCGAAAACAGAAGGCAGCATACACAACATCACCTGGTGTGTTC
GAGCATTTAACGCTTCTGTTATACCGTCTCATAAAGAGCAATGATCAAGC
CGTTAACAAATCAATTGTCAATAATGATGTTGTTGAAGTTCTCCCTGTAG
CCTTTTCTAAC Run BLAST on NCBI protein sequence of TCONS_00019838-protein >TCONS_00019838-protein ID=TCONS_00019838-protein|Name=TCONS_00019838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
LDRSFDSDIEMSEEDFELSDSEDMKEPYSEPEVIYDSDVEIIDMYDIDPN
WRLLCIADVEADPVCKRLDKLIRDGHIRKDQIFYKYLDDMTSIFYDSKHP
YDKDVIEFFTSILHHGGESTYNIVRGPMRQGNEKTKSNEVRMNFGGPGIE
TIRKQKAAYTTSPGVFEHLTLLLYRLIKSNDQAVNKSIVNNDVVEVLPVA
FSN Run BLAST on NCBI transcript from alignment at sc0000338:82014..83041- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019838 ID=TCONS_00019838|Name=TCONS_00019838|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at sc0000338:82014..83041- (Clytia hemisphaerica)
TTCTCGATAGATCATTTGATTCGGACATCGAAATGTCTGAGGAAGATTTC
GAACTGTCAGATTCTGAAGACATGAAAGAGCCATACAGCGAACCTGAAGT
TATATACGATTCTGACGTTGAAATCATTGACATGTATGATATTGATCCCA
ATTGGAGGCTCCTGTGTATTGCGGATGTGGAGGCAGACCCCGTGTGCAAA
CGTCTAGATAAGTTGATAAGGGATGGTCATATCAGAAAAGACCAGATATT
TTACAAGTACTTAGACGACATGACAAGCATCTTTTACGACAGCAAGCATC
CTTATGATAAAGACGTTATCGAATTCTTCACATCAATCCTTCATCACGGC
GGGGAAAGCACATACAACATCGTTCGTGGTCCGATGCGACAAGGAAACGA
GAAAACAAAATCCAATGAAGTACGAATGAATTTTGGTGGGCCAGGGATCG
AGACAATTCGGTATGCACCTAATTAATTTCATATTTAAATATTTGTAGGT
ATAATGGTCTCCTTTGTATGGAATATTACCACAGTGAATGGAGATGGTTA
TTAAGACATAGCTTGGAAACTCCTCGTGTCTCCCTTTCAACACACGGCAT
TTTTCATTTTGAAATTATGATAAGTTATTCGCACTGTCCAGGGGAAGTGT
GCATCAATTGTGCATTTTTTAGTAGAAAGCATGAAATTTGGTACAGTTCC
GGAAGTGGGTCAGAGGCTTAAAATGTTTCTTACCCCCAAAAGTACCATTG
TACCAAATTTCATGTTTTCTACTCAATTGTAATTTCTCAATGTCAAATGC
ACAATTGCACACATTTTTTGCACACTTTGCCTGGACTATCTTCCTTATTA
AACTTTTAACTTATCAATTGTCTTTAGAAAACAGAAGGCAGCATACACAA
CATCACCTGGTGTGTTCGAGCATTTAACGCTTCTGTTATACCGTCTCATA
AAGAGCAATGATCAAGCCGTTAACAAATCAATTGTCAATAATGATGTTGT
TGAAGTTCTCCCTGTAGCCTTTTCTAAC Coding sequence (CDS) from alignment at sc0000338:82014..83041- >TCONS_00019838 ID=TCONS_00019838|Name=TCONS_00019838|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000338:82014..83041- (Clytia hemisphaerica)
AAAACAGAAGGCAGCATACACAACATCACCTGGTGTGTTCGAGCATTTAA
CGCTTCTGTTATACCGTCTCATAAAGAGCAATGATCAAGCCGTTAACAAA
TCAATTGTCAATAATGATGTTGTTGAAGTTCTCCCTGTAGCCTTTTCTAA
CCTCGATAGATCATTTGATTCGGACATCGAAATGTCTGAGGAAGATTTCG
AACTGTCAGATTCTGAAGACATGAAAGAGCCATACAGCGAACCTGAAGTT
ATATACGATTCTGACGTTGAAATCATTGACATGTATGATATTGATCCCAA
TTGGAGGCTCCTGTGTATTGCGGATGTGGAGGCAGACCCCGTGTGCAAAC
GTCTAGATAAGTTGATAAGGGATGGTCATATCAGAAAAGACCAGATATTT
TACAAGTACTTAGACGACATGACAAGCATCTTTTACGACAGCAAGCATCC
TTATGATAAAGACGTTATCGAATTCTTCACATCAATCCTTCATCACGGCG
GGGAAAGCACATACAACATCGTTCGTGGTCCGATGCGACAAGGAAACGAG
AAAACAAAATCCAATGAAGTACGAATGAATTTTGGTGGGCCAGGGATCGA
GACAATTCGAAAACAGAAGGCAGCATACACAACATCACCTGGTGTGTTCG
AGCATTTAACGCTTCTGTTATACCGTCTCATAAAGAGCAATGATCAAGCC
GTTAACAAATCAATTGTCAATAATGATGTTGTTGAAGTTCTCCCTGTAGC
CTTTTCTAACCTCGATAGATCATTTGATTCGGACATCGAAATGTCTGAGG
AAGATTTCGAACTGTCAGATTCTGAAGACATGAAAGAGCCATACAGCGAA
CCTGAAGTTATATACGATTCTGACGTTGAAATCATTGACATGTATGATAT
TGATCCCAATTGGAGGCTCCTGTGTATTGCGGATGTGGAGGCAGACCCCG
TGTGCAAACGTCTAGATAAGTTGATAAGGGATGGTCATATCAGAAAAGAC
CAGATATTTTACAAGTACTTAGACGACATGACAAGCATCTTTTACGACAG
CAAGCATCCTTATGATAAAGACGTTATCGAATTCTTCACATCAATCCTTC
ATCACGGCGGGGAAAGCACATACAACATCGTTCGTGGTCCGATGCGACAA
GGAAACGAGAAAACAAAATCCAATGAAGTACGAATGAATTTTGGTGGGCC
AGGGATCGAGACAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019838-exon-sc0000338-1575043694:82582..83041 | TCONS_00019838-exon-sc0000338-1575043694:82582..83041 | Clytia hemisphaerica | exon |
| TCONS_00019838-exon-sc0000338-1575043694:82014..82164 | TCONS_00019838-exon-sc0000338-1575043694:82014..82164 | Clytia hemisphaerica | exon |
| TCONS_00019838-exon-sc0000338-1510915933:82582..83041 | TCONS_00019838-exon-sc0000338-1510915933:82582..83041 | Clytia hemisphaerica | exon |
| TCONS_00019838-exon-sc0000338-1510915933:82014..82164 | TCONS_00019838-exon-sc0000338-1510915933:82014..82164 | Clytia hemisphaerica | exon |
| TCONS_00019838-exon-sc0000338-1491911889:82582..83041 | TCONS_00019838-exon-sc0000338-1491911889:82582..83041 | Clytia hemisphaerica | exon |
| TCONS_00019838-exon-sc0000338-1491911889:82014..82164 | TCONS_00019838-exon-sc0000338-1491911889:82014..82164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:82014..83041 - |
Blast
The following BLAST results are available for this feature:
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