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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019717 ID=TCONS_00019717|Name=TCONS_00019717|organism=Clytia hemisphaerica|type=transcript|length=883bp
GACCTATGTCTTATATCTGTTTTTACCCCCCGCTAGTCAATCCCAAGTTT
CGAATTATCTtaatgaaattgacgtcagaagatttattttcgaaaaattg
aaaatgcacTGCAGCAGTCTCCAAATTTTATAACGTCGACATCCTCAAAA
CCTTCAAACGATCGATTACTAGCTGTGTTGTGTTGTGTGCCGTCTTGTTT
ATATTGAAAAGCAGAGAAATCATTAAAATGTCGCTAATAACAGAAGAAGA
ATTTAACTTTATGACACACATCTATGAAGAGCGAATGGCCATATCACAGT
TCAAGGAAATGCATCGGAGAATGGAACGAGCGGCCCATTTCGGTGGAACC
TCGCACGAACAAGAAATTTATGACAAAGAAAGCGAGATCGGTAAGATCAG
ATATTTGATACGTAGAATGGAACTGACAAGAGCTTATTATCACCAACTCG
CAAATAAAGGATTACCATTCAACGACACTTTCTTGACACATTTGAAATTA
GCACATACCTTTCTTCAAAACCAACAACGACTTCGTAGGGAAGAGTTGAA
AACACTTCAACAAGAACCTGTCAAGGTTTCAGAAGAACCGGAGAACCAAG
AACCAGACGAAGAATTCAACGAGCTACAATTACCACTCACTAAAAGTGCT
AAACGAAGACTTCGACGACTGAgattgaaaaaccaaaaatcgGAAGAAAA
TGAAGTGGCTGACACTGAGGTTGATGCGGTTGACAATACAAAGAACAATT
CTTAACTCTCTAAAACTCTCGGCTTTGGACGTCCCTCAACGAACTgtaat
ttttgtacatttttgtaacacgacagtattcaaagtaatataaatttttg
aattatattttttataagaattgcaACTTCCCT Run BLAST on NCBI protein sequence of TCONS_00019717-protein >TCONS_00019717-protein ID=TCONS_00019717-protein|Name=TCONS_00019717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MSLITEEEFNFMTHIYEERMAISQFKEMHRRMERAAHFGGTSHEQEIYDK
ESEIGKIRYLIRRMELTRAYYHQLANKGLPFNDTFLTHLKLAHTFLQNQQ
RLRREELKTLQQEPVKVSEEPENQEPDEEFNELQLPLTKSAKRRLRRLRL
KNQKSEENEVADTEVDAVDNTKNNS Run BLAST on NCBI transcript from alignment at sc0000335:72617..73608+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019717 ID=TCONS_00019717|Name=TCONS_00019717|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0000335:72617..73608+ (Clytia hemisphaerica)
GACCTATGTCTTATATCTGTTTTTACCCCCCGCTAGTCAATCCCAAGTTT
CGAATTATCTtaatgaaattgacgtcagaagatttattttcgaaaaattg
aaaatgcacTGCAGCAGTCTCCAAATTTTATAACGTCGACATCCTCAAAA
CCTTCAAACGATCGATTACTAGCTGTGTTGTGTTGTGTGCCGTCTTGTTT
ATATTGAAAAGCAGAGAAATCATTAAAATGTCGCTAATAACAGAAGAAGA
ATTTAACTTTATGACACACATCTATGAAGAGCGAATGGCCATATCACAGT
TCAAGGAAATGCATCGGAGAATGGAACGAGCGGCCCATTTCGGTGGAACC
TCGCACGAACAAGAAATTTATGACAAAGAAAGCGAGATCGGTAAGATCAG
ATATTTGATACGTAGAATGGAACTGACAAGAGCTTATTATCACCAACTCG
CAAATAAAGGATTACCATTCAACGACACTTTCTTGACACATTTGAAATTA
GCACATACATTTCTTCAAAACCAACAACGACTTCGTAGGGAAGAGTTGAA
AACACTTCAACAAGAACCTGTCAAGGTTTCAGAAGAACCGGAGAACCAAG
ANAAAATTAGCACATACCTTTCTTCAAAACCAACAACGACTTCGTAGGGA
AGAGTTGAAAACACTTCAACAAGAACCTGTCAAGGTTTCAGAAGAACCGG
AGAACCAAGAACCAGACGAAGAATTCAACGAGCTACAATTACCACTCACT
AAAAGTGCTAAACGAAGACTTCGACGACTGAgattgaaaaaccaaaaatc
gGAAGAAAATGAAGTGGCTGACACTGAGGTTGATGCGGTTGACAATACAA
AGAACAATTCTTAACTCTCTAAAACTCTCGGCTTTGGACGTCCCTCAACG
AACTgtaatttttgtacatttttgtaacacgacagtattcaaagtaatat
aaatttttgaattatattttttataagaattgcaACTTCCCT Coding sequence (CDS) from alignment at sc0000335:72617..73608+ >TCONS_00019717 ID=TCONS_00019717|Name=TCONS_00019717|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000335:72617..73608+ (Clytia hemisphaerica)
ATGTCGCTAATAACAGAAGAAGAATTTAACTTTATGACACACATCTATGA
AGAGCGAATGGCCATATCACAGTTCAAGGAAATGCATCGGAGAATGGAAC
GAGCGGCCCATTTCGGTGGAACCTCGCACGAACAAGAAATTTATGACAAA
GAAAGCGAGATCGGTAAGATCAGATATTTGATACGTAGAATGGAACTGAC
AAGAGCTTATTATCACCAACTCGCAAATAAAGGATTACCATTCAACGACA
CTTTCTTGACACATTTGAAATTAGCACATACCTTTCTTCAAAACCAACAA
CGACTTCGTAGGGAAGAGTTGAAAACACTTCAACAAGAACCTGTCAAGGT
TTCAGAAGAACCGGAGAACCAAGAACCAGACGAAGAATTCAACGAGCTAC
AATTACCACTCACTAAAAGTGCTAAACGAAGACTTCGACGACTGAgattg
aaaaaccaaaaatcgGAAGAAAATGAAGTGGCTGACACTGAGGTTGATGC
GGTTGACAATACAAAGAACAATTCTTAAATGTCGCTAATAACAGAAGAAG
AATTTAACTTTATGACACACATCTATGAAGAGCGAATGGCCATATCACAG
TTCAAGGAAATGCATCGGAGAATGGAACGAGCGGCCCATTTCGGTGGAAC
CTCGCACGAACAAGAAATTTATGACAAAGAAAGCGAGATCGGTAAGATCA
GATATTTGATACGTAGAATGGAACTGACAAGAGCTTATTATCACCAACTC
GCAAATAAAGGATTACCATTCAACGACACTTTCTTGACACATTTGAAATT
AGCACATACCTTTCTTCAAAACCAACAACGACTTCGTAGGGAAGAGTTGA
AAACACTTCAACAAGAACCTGTCAAGGTTTCAGAAGAACCGGAGAACCAA
GAACCAGACGAAGAATTCAACGAGCTACAATTACCACTCACTAAAAGTGC
TAAACGAAGACTTCGACGACTGAgattgaaaaaccaaaaatcgGAAGAAA
ATGAAGTGGCTGACACTGAGGTTGATGCGGTTGACAATACAAAGAACAAT
TCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019717-exon-sc0000335-1491911889:72617..73120 | TCONS_00019717-exon-sc0000335-1491911889:72617..73120 | Clytia hemisphaerica | exon |
| TCONS_00019717-exon-sc0000335-1510915933:72617..73120 | TCONS_00019717-exon-sc0000335-1510915933:72617..73120 | Clytia hemisphaerica | exon |
| TCONS_00019717-exon-sc0000335-1575043694:72617..73120 | TCONS_00019717-exon-sc0000335-1575043694:72617..73120 | Clytia hemisphaerica | exon |
| TCONS_00019717-exon-sc0000335-1491911889:73230..73608 | TCONS_00019717-exon-sc0000335-1491911889:73230..73608 | Clytia hemisphaerica | exon |
| TCONS_00019717-exon-sc0000335-1510915933:73230..73608 | TCONS_00019717-exon-sc0000335-1510915933:73230..73608 | Clytia hemisphaerica | exon |
| TCONS_00019717-exon-sc0000335-1575043694:73230..73608 | TCONS_00019717-exon-sc0000335-1575043694:73230..73608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335 | supercontig | sc0000335:72617..73608 + |
Blast
The following BLAST results are available for this feature:
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