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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019705 ID=TCONS_00019705|Name=TCONS_00019705|organism=Clytia hemisphaerica|type=transcript|length=1346bpRun BLAST on NCBI protein sequence of TCONS_00019705-protein >TCONS_00019705-protein ID=TCONS_00019705-protein|Name=TCONS_00019705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp MVMGDKWKATDHGYKYGVALCNFTPSESLQHGLKLNVGETVQIQEEYQGWRun BLAST on NCBI transcript from alignment at sc0000335:16955..35133+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019705 ID=TCONS_00019705|Name=TCONS_00019705|organism=Clytia hemisphaerica|type=transcript|length=18179bp|location=Sequence derived from alignment at sc0000335:16955..35133+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000335:16955..35133+ >TCONS_00019705 ID=TCONS_00019705|Name=TCONS_00019705|organism=Clytia hemisphaerica|type=CDS|length=6072bp|location=Sequence derived from alignment at sc0000335:16955..35133+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019705 vs. Swiss-Prot (Human)
Match: DOCK3 (Dedicator of cytokinesis protein 3 OS=Homo sapiens GN=DOCK3 PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.374e-43 Identity = 89/244 (36.48%), Postives = 142/244 (58.20%), Query Frame = 3
Query: 606 WKATDHGYKYGVALCNFTPSESLQHGLKLNVGETVQIQEEYQGWFKGKLMQDRSITGIFPKNHVKVKEANLVNFGKFEEVIPTLEPVIEESTSVLREWGSLSKDLFLERSLSIFQVLKATMNTLMENRREIIFGKLTQDQQKELKEKITDKIDSVNKKLNLDLVPRIDGEIIEGDSASVVELYQVHLEXXXXXXXXXXXXXXXXXXXGQHNQEKRMSIYGTLSKRPPPLKTPTSHHFFIAFKSF 1337
W T+ KYGV +C+F S+ GL L +GETVQI E+ +GW++G + ++ GIFP N++ +K+A + N G++E V+P + ++ E T+ L+EW SL K L+++ + +F L+ MN L++ RR+++ G LTQDQ +E+K IT ++D N+ L LDLVPR D E+++ D SV +LY++HL S Q Q+ + + + P HHFF++ KSF
Sbjct: 2 WTPTEEE-KYGVVICSF--RGSVPQGLVLEIGETVQILEKCEGWYRGVSTKKPNVKGIFPANYIHLKKAIVSNRGQYETVVPLEDSIVTEVTATLQEWASLWKQLYVKHKVDLFYKLRHVMNELIDLRRQLLSGHLTQDQVREVKRHITVRLDWGNEHLGLDLVPRKDFEVVDSDQISVSDLYKMHLSSR------------------QSVQQSTSQVDTMRPRHGETCRMPVPHHFFLSLKSF 224 The following BLAST results are available for this feature:
BLAST of TCONS_00019705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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