|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019695 ID=TCONS_00019695|Name=TCONS_00019695|organism=Clytia hemisphaerica|type=transcript|length=3782bp
GTTTTCCTTTCGTTTACAGTAACCAGCTgttctttaaattttcttacGGC
TACCGATAAAGATAACAAAAACATCACGGGTTCAGagttcgaaaatattt
ttttgtgaaaggcACAGAGAAAAGGCAAAAGGTGTTGATTTGATGGAGTT
ACCCATGCCCAGATAACAATCTAAAACACTGAGATTAGGGCTTCCAGTTC
GTCTAAAATGTCTGTGTTATTTTTGGAATCAATATCAGTGAGTATCTTGA
TACTTTTCATTTTGTCTGCAAGTGGGCAAAATCGTGGTTTGTTTGTCAGA
GGGAGAAGACCATTGCCAATCGATGGACATTGGAATTCATGGGGACCTTG
GTCAGAGTGCTATTTAAACTCGAAAAATGTTGAGAACTTTTACCCTTCTC
TGGAAAACTTCCAAATTCAGAACCGCAATCGTTCTTGTGACAACCCAAAA
CCAATCAATGGAGGGGAAGACTGTGAACCTCCAACTCATCGTTTCAAACA
ATGTAGCTGTATGAACCCACTCGGAATGGAGACTAAGCTGATCGCTGATT
CTCAGATTTCAAGCACTCCTCACTTTAATTCATATTCAGCTTCTCAAGGG
CGTATTGGAGATGAATATAATGGTTGGTGCTCAAACGTAAAAGAAAGcca
tttcaataaaatttaccttGAAATTGATTTTGGAAAGTTTGCAAATGTTG
GAGCAATAGAAATGGAAGGTTCTAACAAAAATGGCAGAGTAACACGTTAT
TCACTTGAATACAGTTTGAATGGCAAAGATTGGGAAAATATCATTCCCAA
GAACggttttaaaggaaaattcaAAGGAAATCTTGTGCCAGGCAGATCGA
GAGCAAATTTTAGTCAGCACAGAGTTATGAAATATCTTCGTGTAATACCA
TTGAAATCATATGGTGACTACCCTTGCTTAAAAATTGAACCCTTTGGTTG
TACTTTTACTTGTGGTGAAGTTTTGAcatctgattatggaaaaatttCAG
GGAATAGTCGAGTTGATATAGATCAAAACTGCCTTTGGAGGATTGAAGTT
TTAAACACAAGTGCATTGTCATTTGATTTCACAATATTTGATATACTTTG
CGAGCATGGTTATTTGAATATTCANTGCATTGTCTTTTGATTTCACAATA
TTTGACATACTTTGTGAGCATGGTTATTTGAATATTCGCGAtggatattt
tgattttattgattctCCAGTAATTGAGAGGTTGTGTTTGAAAAACAGGG
ATCAAGATTTTAATCATCTTTTAAAAATCAACACAAATAAAGTATGGCTT
AATTTTGTATCCAATTCATCAGATTATGAAGATGGTTttactttgaaata
ttttggtgAATGCAAGCAAACTATAAATTTGATTGAGGGAAAACCAAATA
AAATTAATTCGCCAAATTTTCCTAATGAATACTTTGGAAATATGGACTGC
ATGTGGAATGTAAATGCTGCTCAAGGTGTTAATTCTATTGATATAATATT
TAATGACTTCAGTATTGAAAGTACCTCAAAGTCATGTCTGGATGATACAT
TGACAATAAATTATTATCAGAACGAGCAGGAAAATCTTCTTGGAGTTTTT
TGCAATGACAATATACCAAAAATGAACTACTCATTATTAGCTGATCGTGT
TAGTATACATTTCAAGACAGACTCCATCTCCTCAGACAGAGGCTTCAGCA
TATTAATTCAGTCAGGCAAAAAACTACCACCCACAGAAAGAAACATGATT
CCTGAAAACCCAACGTCATCGATAGAAACAACTTTAACCTCTGAATCCAC
TTTCAACAATGATACATTTGGTACTcctagaaaagataaaaaagaagaTA
GTGGAAGTGATTGGACTATAATCACGATATCGGCGTTCTCAGCAATTGTA
GTTTTACTACTTATTTGGGTTATTGGTAACAACCTCCGCCGCTTCATTAA
CAACCGTAATGAAGTGGAAGCCCATTGTGCCAAAGTGAAAGCAAAAAATG
AAGAGAAGATTCTGCAAGAGCAAAAGAGAGCTTCACAAGCTGAGAGATAT
TCTTTAATTCAAAGCCCAAAACATGATATTGTTATGGTGTCTCCAAAGCa
caaattttctccttcaccaGTTAAAACTATGAGTCCAAGTAAAATGACAG
AGGATATTAATGATGAAGAACTTCATGATAGTGTCGATGGAGAGTTATCT
CATTTAATGTCTACACCAGAGCATAATTCAACTATTAGCAAACAGGATAC
TGTTAGTCCTGTAAGTGGGACACACTCTTTGAACTCTCCTGCCGAAGCAG
AAGTAGACCTACCTAAAGGGTATAATGGGTCTTTGCAGGTCCAATCACCT
AGTAAACTGAACAGTACATCTGATGTATCTTTTAAAGAAGGAAATAATAA
TAGTGATATCGAGTCTTGTGTATAGTGTTAATAGACATCCATTTTATAta
aggaattttttcaaagctttttcaTTTCCTTTTGGATTTGTTCAAATACT
TGAGTACAAAGTCTAGAGTACGGGGGAAGTCTAACACTCGATTCTCATTC
AAAAGTTATTTCACCTGTAAAATCGATTTTAATTCCTTCTtagttttaat
caaaaatatttatgagAATCCATTGATGAAACGTAACATGTGAAAGGATA
AAGTTCACAATTTATATATTGTATATCATTTGTTACAAGCTATCACAATT
TGAGTTTGATATTATTGTATTTGTGAGGTTTTGAACTCTGTCTATTTTAT
CTTGTGTTCCCTGTCAAAAAATGCAAATGTTTTCCTAGTAATTTGAAACT
AGGGTTGTGTCAAGGTATTGCAAAATCTGACCTTTTTAAAACCACACACT
TAGAAAAACCTTCAgacattttatacacgatatAACTTTTACATAAGAAA
TTTGTTCAAATGGTCAAGCTTGCCTCGCAacaatttttagtttgaaaaat
cTAGTCAGAAAACGCTCAGAACGAAAAAACTACTTAGAAGACATGTTGCC
CCGAAATTAAAAGGGAAGAGGGTATAAGAAAAGACCAGGATAACGTTAGG
ATTAAGTTTTAACTTATTtcgattttcctttttcttcctatttttcattc
ttttcgaAAATATGACGAACTACCACCCACTAAACACCCTATAAGCCTTC
TTGTTGTTCAAATAAATAATTTatgttctaaattttttttcccttttATT
TTAATTTACCAGACCTACTacgactttttttattttgagaattttggaTT
TGTATTGTATTAAAtgaaactagccggtacccggcgtcgcacgccggtta
agctgtagctgaacgcaatAAAATTCCTTTGGATGGAgacgaatttttct
ttttaagtcaaaagttatcaggaagagcatcgtttactgtaccagtgtcg
tcTGAAACAACTCTGAATATGCCGTCCAgttgaaatgacaattcttcagg
aaaaagtgggaaagtctcaaagaatagtgcaactctttgtttttatcaga
ttgaaaaaataagacaattctaagttactttttttaaaacccttgtcata
acttttcgaatttaaacatgtaaaatgacgtacacactttttgacaGTAG
CGacgacttgaatgtttttatatgaagaaagagattgactaattttccct
ttttgctttttatcgcctTTTGAATGCTGTCTTTGTTTGGTTTGACaaca
gtagcggcctggctaaattttcttggtggtgcaaactatgaaattggcgt
ccttggtatttttgtccttatttgcgccctcc Run BLAST on NCBI protein sequence of TCONS_00019695-protein >TCONS_00019695-protein ID=TCONS_00019695-protein|Name=TCONS_00019695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MDCMWNVNAAQGVNSIDIIFNDFSIESTSKSCLDDTLTINYYQNEQENLL
GVFCNDNIPKMNYSLLADRVSIHFKTDSISSDRGFSILIQSGKKLPPTER
NMIPENPTSSIETTLTSESTFNNDTFGTPRKDKKEDSGSDWTIITISAFS
AIVVLLLIWVIGNNLRRFINNRNEVEAHCAKVKAKNEEKILQEQKRASQA
ERYSLIQSPKHDIVMVSPKHKFSPSPVKTMSPSKMTEDINDEELHDSVDG
ELSHLMSTPEHNSTISKQDTVSPVSGTHSLNSPAEAEVDLPKGYNGSLQV
QSPSKLNSTSDVSFKEGNNNSDIESCV Run BLAST on NCBI transcript from alignment at sc0000333:206373..210154 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019695 ID=TCONS_00019695|Name=TCONS_00019695|organism=Clytia hemisphaerica|type=transcript|length=3782bp|location=Sequence derived from alignment at sc0000333:206373..210154 (Clytia hemisphaerica)
ggagggcgcaaataaggacaaaaataccaaggacgccaatttcatagttt
gcaccaccaagaaaatttagccaggccgctactgttGTCAAACCAAACAA
AGACAGCATTCAAAaggcgataaaaagcaaaaagggaaaattagtcaatc
tctttcttcatataaaaacattcaagtcgtCGCTACtgtcaaaaagtgtg
tacgtcattttacatgtttaaattcgaaaagttatgacaagggttttaaa
aaaagtaacttagaattgtcttattttttcaatctgataaaaacaaagag
ttgcactattctttgagactttcccactttttcctgaagaattgtcattt
caacTGGACGGCATATTCAGAGTTGTTTCAgacgacactggtacagtaaa
cgatgctcttcctgataacttttgacttaaaaagaaaaattcgtcTCCAT
CCAAAGGAATTTTattgcgttcagctacagcttaaccggcgtgcgacgcc
gggtaccggctagtttcaTTTAATACAATACAAAtccaaaattctcaaaa
taaaaaaagtcgtAGTAGGTCTGGTAAATTAAAATaaaagggaaaaaaaa
tttagaacatAAATTATTTATTTGAACAACAAGAAGGCTTATAGGGTGTT
TAGTGGGTGGTAGTTCGTCATATTTtcgaaaagaatgaaaaataggaaga
aaaaggaaaatcgaAATAAGTTAAAACTTAATCCTAACGTTATCCTGGTC
TTTTCTTATACCCTCTTCCCTTTTAATTTCGGGGCAACATGTCTTCTAAG
TAGTTTTTTCGTTCTGAGCGTTTTCTGACTAgatttttcaaactaaaaat
tgtTGCGAGGCAAGCTTGACCATTTGAACAAATTTCTTATGTAAAAGTTa
tatcgtgtataaaatgtcTGAAGGTTTTTCTAAGTGTGTGGTTTTAAAAA
GGTCAGATTTTGCAATACCTTGACACAACCCTAGTTTCAAATTACTAGGA
AAACATTTGCATTTTTTGACAGGGAACACAAGATAAAATAGACAGAGTTC
AAAACCTCACAAATACAATAATATCAAACTCAAATTGTGATAGCTTGTAA
CAAATGATATACAATATATAAATTGTGAACTTTATCCTTTCACATGTTAC
GTTTCATCAATGGATTctcataaatatttttgattaaaactaAGAAGGAA
TTAAAATCGATTTTACAGGTGAAATAACTTTTGAATGAGAATCGAGTGTT
AGACTTCCCCCGTACTCTAGACTTTGTACTCAAGTATTTGAACAAATCCA
AAAGGAAAtgaaaaagctttgaaaaaattccttaTATAAAATGGATGTCT
ATTAACACTATACACAAGACTCGATATCACTATTATTATTTCCTTCTTTA
AAAGATACATCAGATGTACTGTTCAGTTTACTAGGTGATTGGACCTGCAA
AGACCCATTATACCCTTTAGGTAGGTCTACTTCTGCTTCGGCAGGAGAGT
TCAAAGAGTGTGTCCCACTTACAGGACTAACAGTATCCTGTTTGCTAATA
GTTGAATTATGCTCTGGTGTAGACATTAAATGAGATAACTCTCCATCGAC
ACTATCATGAAGTTCTTCATCATTAATATCCTCTGTCATTTTACTTGGAC
TCATAGTTTTAACtggtgaaggagaaaatttgtGCTTTGGAGACACCATA
ACAATATCATGTTTTGGGCTTTGAATTAAAGAATATCTCTCAGCTTGTGA
AGCTCTCTTTTGCTCTTGCAGAATCTTCTCTTCATTTTTTGCTTTCACTT
TGGCACAATGGGCTTCCACTTCATTACGGTTGTTAATGAAGCGGCGGAGG
TTGTTACCAATAACCCAAATAAGTAGTAAAACTACAATTGCTGAGAACGC
CGATATCGTGATTATAGTCCAATCACTTCCACTAtcttcttttttatctt
ttctaggAGTACCAAATGTATCATTGTTGAAAGTGGATTCAGAGGTTAAA
GTTGTTTCTATCGATGACGTTGGGTTTTCAGGAATCATGTTTCTTTCTGT
GGGTGGTAGTTTTTTGCCTGACTGAATTAATATGCTGAAGCCTCTGTCTG
AGGAGATGGAGTCTGTCTTGAAATGTATACTAACACGATCAGCTAATAAT
GAGTAGTTCATTTTTGGTATATTGTCATTGCAAAAAACTCCAAGAAGATT
TTCCTGCTCGTTCTGATAATAATTTATTGTCAATGTATCATCCAGACATG
ACTTTGAGGTACTTTCAATACTGAAGTCATTAAATATTATATCAATAGAA
TTAACACCTTGAGCAGCATTTACATTCCACATGCAGTCCATATTTCCAAA
GTATTCATTAGGAAAATTTGGCGAATTAATTTTATTTGGTTTTCCCTCAA
TCAAATTTATAGTTTGCTTGCATTcaccaaaatatttcaaagtaaAACCA
TCTTCATAATCTGATGAATTGGATACAAAATTAAGCCATACTTTATTTGT
GTTGATTTTTAAAAGATGATTAAAATCTTGATCCCTGTTTTTCAAACACA
ACCTCTCAATTACTGGagaatcaataaaatcaaaatatccaTCGCGAATA
TTCAAATAACCATGCTCACAAAGTATGTCAAATATTGTGAAATCAAAAGA
CAATGCANTGAATATTCAAATAACCATGCTCGCAAAGTATATCAAATATT
GTGAAATCAAATGACAATGCACTTGTGTTTAAAACTTCAATCCTCCAAAG
GCAGTTTTGATCTATATCAACTCGACTATTCCCTGaaatttttccataat
cagatgTCAAAACTTCACCACAAGTAAAAGTACAACCAAAGGGTTCAATT
TTTAAGCAAGGGTAGTCACCATATGATTTCAATGGTATTACACGAAGATA
TTTCATAACTCTGTGCTGACTAAAATTTGCTCTCGATCTGCCTGGCACAA
GATTTCCTTtgaattttcctttaaaaccGTTCTTGGGAATGATATTTTCC
CAATCTTTGCCATTCAAACTGTATTCAAGTGAATAACGTGTTACTCTGCC
ATTTTTGTTAGAACCTTCCATTTCTATTGCTCCAACATTTGCAAACTTTC
CAAAATCAATTTCaaggtaaattttattgaaatggCTTTCTTTTACGTTT
GAGCACCAACCATTATATTCATCTCCAATACGCCCTTGAGAAGCTGAATA
TGAATTAAAGTGAGGAGTGCTTGAAATCTGAGAATCAGCGATCAGCTTAG
TCTCCATTCCGAGTGGGTTCATACAGCTACATTGTTTGAAACGATGAGTT
GGAGGTTCACAGTCTTCCCCTCCATTGATTGGTTTTGGGTTGTCACAAGA
ACGATTGCGGTTCTGAATTTGGAAGTTTTCCAGAGAAGGGTAAAAGTTCT
CAACATTTTTCGAGTTTAAATAGCACTCTGACCAAGGTCCCCATGAATTC
CAATGTCCATCGATTGGCAATGGTCTTCTCCCTCTGACAAACAAACCACG
ATTTTGCCCACTTGCAGACAAAATGAAAAGTATCAAGATACTCACTGATA
TTGATTCCAAAAATAACACAGACATTTTAGACGAACTGGAAGCCCTAATC
TCAGTGTTTTAGATTGTTATCTGGGCATGGGTAACTCCATCAAATCAACA
CCTTTTGCCTTTTCTCTGTgcctttcacaaaaaaatattttcgaactCTG
AACCCGTGATGTTTTTGTTATCTTTATCGGTAGCCgtaagaaaatttaaa
gaacAGCTGGTTACTGTAAACGAAAGGAAAAC Coding sequence (CDS) from alignment at sc0000333:206373..210154 >TCONS_00019695 ID=TCONS_00019695|Name=TCONS_00019695|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000333:206373..210154 (Clytia hemisphaerica)
CTATACACAAGACTCGATATCACTATTATTATTTCCTTCTTTAAAAGATA
CATCAGATGTACTGTTCAGTTTACTAGGTGATTGGACCTGCAAAGACCCA
TTATACCCTTTAGGTAGGTCTACTTCTGCTTCGGCAGGAGAGTTCAAAGA
GTGTGTCCCACTTACAGGACTAACAGTATCCTGTTTGCTAATAGTTGAAT
TATGCTCTGGTGTAGACATTAAATGAGATAACTCTCCATCGACACTATCA
TGAAGTTCTTCATCATTAATATCCTCTGTCATTTTACTTGGACTCATAGT
TTTAACtggtgaaggagaaaatttgtGCTTTGGAGACACCATAACAATAT
CATGTTTTGGGCTTTGAATTAAAGAATATCTCTCAGCTTGTGAAGCTCTC
TTTTGCTCTTGCAGAATCTTCTCTTCATTTTTTGCTTTCACTTTGGCACA
ATGGGCTTCCACTTCATTACGGTTGTTAATGAAGCGGCGGAGGTTGTTAC
CAATAACCCAAATAAGTAGTAAAACTACAATTGCTGAGAACGCCGATATC
GTGATTATAGTCCAATCACTTCCACTAtcttcttttttatcttttctagg
AGTACCAAATGTATCATTGTTGAAAGTGGATTCAGAGGTTAAAGTTGTTT
CTATCGATGACGTTGGGTTTTCAGGAATCATGTTTCTTTCTGTGGGTGGT
AGTTTTTTGCCTGACTGAATTAATATGCTGAAGCCTCTGTCTGAGGAGAT
GGAGTCTGTCTTGAAATGTATACTAACACGATCAGCTAATAATGAGTAGT
TCATTTTTGGTATATTGTCATTGCAAAAAACTCCAAGAAGATTTTCCTGC
TCGTTCTGATAATAATTTATTGTCAATGTATCATCCAGACATGACTTTGA
GGTACTTTCAATACTGAAGTCATTAAATATTATATCAATAGAATTAACAC
CTTGAGCAGCATTTACATTCCACATGCAGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019695-exon-sc0000333-1491911889:206373..210154 | TCONS_00019695-exon-sc0000333-1491911889:206373..210154 | Clytia hemisphaerica | exon |
| TCONS_00019695-exon-sc0000333-1510915933:206373..210154 | TCONS_00019695-exon-sc0000333-1510915933:206373..210154 | Clytia hemisphaerica | exon |
| TCONS_00019695-exon-sc0000333-1575043694:206373..210154 | TCONS_00019695-exon-sc0000333-1575043694:206373..210154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000333 | supercontig | sc0000333:206373..210154 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
|
