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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019658 ID=TCONS_00019658|Name=TCONS_00019658|organism=Clytia hemisphaerica|type=transcript|length=1413bp
gggttccACCTTGCTTGACGACCGTAAAAACGCCAAAAAAtagtcgtctg
tttaggtgagcaaagttGGTATAGAGGTTTCAAGTTTGCTTTGCGTCGAC
TTCCTTTACCGTCGttctcgatatcctccgatataAACCCGGTTTTCATT
CATCCAGTACTGAAATTTATCGAGATTTGAATTGCTTTCATTTTTGTATA
ATGATACTCACCTATTGTATATTTCATTGTTCCTAGGAAataacataact
tttttttctctcCACAGCTATATGTAACCCAACAGTGAATTGCTGGAGAC
GTTTACACGTTGTCAGTGGTGAACACGATATCGGTACTCCAGATGATATT
ACTTGGGGACTCGAAAACCGTGATACCATGATCCGCGTCATCGCTCGTGG
TGCTGGAAAAGCAACATACCTCGAAAACCGTTCACCCGGGGCTGCCATGA
ATCCTTATCTCGGCCTAGCCGGAATGGTAGCTGCCGGACTAGATGGAATC
CGGAACAAGCTGGAGTTACCAGCCGAAGGCACCGGATTAAACGAATGCGG
TAAGTTACCGGATAGCCTGGAAGATGCTTTACAAGCTCTGGAAAATGACG
GTGCTATGGTTGATCTCCTTGGACAAGAATTTGTTAATTGGTTCACAGGA
GCCAAGAGaaatgaaatggtttgtttacaaaaatacaCACAGAAACATGA
TGGGGATAGCTTTAAAGCCGAACTCGAATATTACTCACGATGGATCTGAA
CTTTATTACTTAAATTGAATATGTTAAGACAGTCGCTCTGTCTCAAGTTG
ATATTTTCCCAGGAGAGCTCTATAAGGAGaaaaaaatgctttcttttAGT
GAATTTCTTTGCTTCGTTCCATTCAAAAAAGCCTTCTTCATTTTAGAAAT
TAGCCGTAAATTCTAAAACAGTAATTCTCTCAATCGGTCTCAATCAAGTA
GAGGCCAACTGTCTTAATTATTACTATTACTGTACCATTGGAAGTGTCAA
TAATACTTAAGAGATCGTTTCGGacactttgaattttcagaCAACATGAT
TTTTTGTCCGAAATTTGTGATCTGGTCTCTTAAgtgtcagaatttttttt
tcaaagattttgttgaTAATTTGTACATATAATTTTATATATCAACAACA
ATTTCattgtaaaaaagaaaatttaaataactagtaaaaattttggaaaa
caaCTTTTTTAGCTCATTACTAAAATCTTgtatcattttaaatttttttt
catttttttgtaaagtttttctaCAGTTTTTCTAGGGGGATTTGTTTCTT
ACCGAAAGAAAGAAATAATGAACGTGTCGATAAATTTCTATCGTTTCTAT
GCATATAACATAacacacccttctcacagaccccttgggccccttcccac
tggaaaaattgac Run BLAST on NCBI protein sequence of TCONS_00019658-protein >TCONS_00019658-protein ID=TCONS_00019658-protein|Name=TCONS_00019658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MIRVIARGAGKATYLENRSPGAAMNPYLGLAGMVAAGLDGIRNKLELPAE
GTGLNECGKLPDSLEDALQALENDGAMVDLLGQEFVNWFTGAKRNEMVCL
QKYTQKHDGDSFKAELEYYSRWI Run BLAST on NCBI transcript from alignment at sc0000333:278585..280613+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019658 ID=TCONS_00019658|Name=TCONS_00019658|organism=Clytia hemisphaerica|type=transcript|length=2029bp|location=Sequence derived from alignment at sc0000333:278585..280613+ (Clytia hemisphaerica)
gggttccACCTTGCTTGACGACCGTAAAAACGCCAAAAAAtagtcgtctg
tttaggtgagcaaagttGGTATAGAGGTTTCAAGTTTGCTTTGCGTCGAC
TTCCTTTACCGTCGttctcgatatcctccgatataAACCCGGTTTTCATT
CATCCAGTACTGAAATTTATCGAGATTTGAATTGCTTTCATTTTTGTATA
ATGATACTCACCTATTGTATATTTCATTGTTCCTAGGAAataacataact
tttttttctctcCACAGCTATATGTAACCCAACAGTGAATTGCTGGAGAC
GTTTACACGTTGTCAGTGGTGAACACGATATCGGTAAGCCAACGTCTTCT
GCTTTATTGCCGTAAAACCATTTATTTACAACCCCAAAGATTTTGTAGTT
AGTACACAATGCTACTTGATGCTTGATGCCAACTTATTAAGGGAAGGGTC
AAGGGTGAGTGGAagaatccagggaaaggagtggcgctcTCCCCTACCAT
TGGGTAGACAGCCAAAGAAAGGGAGCCTTCGGATCGACCTCGAATGTGGT
CGCAAACTTTTTATTTAGAATCCAGTCTTCTTTAGAGTTATTGGTTGAAC
TTTTTTAGCTGGCAACCTGTTCAGCTCACTAATGTTCTATGAAAATACTA
TATACTTTATTGAAAGCTGAGATATggttcaatagaccttttcataaatt
acgtcaggAACATCACTTGCCCCGTTTTGGAATTATTGCCacggtgatta
actcccagcggattatattaaaactactttctataaaatttatttataaa
atatatttataaaaagaatcatttaatgtctcaagggacataatcaccat
ggtaattgtttaaatacgaggcaagtgatgttcgtgacgtaatttatgaa
aagatctatttgaaataataaaaaccttttcgtcttttttgtcatGTAGG
TACTCCAGATGATATTACTTGGGGACTCGAAAACCGTGATACCATGATCC
GCGTCATCGCTCGTGGTGCTGGAAAAGCAACATACCTCGAAAACCGTTCA
CCCGGGGCTGCCATGAATCCTTATCTCGGCCTAGCCGGAATGGTAGCTGC
CGGACTAGATGGAATCCGGAACAAGCTGGAGTTACCAGCCGAAGGCACCG
GATTAAACGAATGCGGTAAGTTACCGGATAGCCTGGAAGATGCTTTACAA
GCTCTGGAAAATGACGGTGCTATGGTTGATCTCCTTGGACAAGAATTTGT
TAATTGGTTCACAGGAGCCAAGAGaaatgaaatggtttgtttacaaaaat
acaCACAGAAACATGATGGGGATAGCTTTAAAGCCGAACTCGAATATTAC
TCACGATGGATCTGAACTTTATTACTTAAATTGAATATGTTAAGACAGTC
GCTCTGTCTCAAGTTGATATTTTCCCAGGAGAGCTCTATAAGGAGaaaaa
aatgctttcttttAGTGAATTTCTTTGCTTCGTTCCATTCAAAAAAGCCT
TCTTCATTTTAGAAATTAGCCGTAAATTCTAAAACAGTAATTCTCTCAAT
CGGTCTCAATCAAGTAGAGGCCAACTGTCTTAATTATTACTATTACTGTA
CCATTGGAAGTGTCAATAATACTTAAGAGATCGTTTCGGacactttgaat
tttcagaCAACATGATTTTTTGTCCGAAATTTGTGATCTGGTCTCTTAAg
tgtcagaatttttttttcaaagattttgttgaTAATTTGTACATATAATT
TTATATATCAACAACAATTTCattgtaaaaaagaaaatttaaataactag
taaaaattttggaaaacaaCTTTTTTAGCTCATTACTAAAATCTTgtatc
attttaaattttttttcatttttttgtaaagtttttctaCAGTTTTTCTA
GGGGGATTTGTTTCTTACCGAAAGAAAGAAATAATGAACGTGTCGATAAA
TTTCTATCGTTTCTATGCATATAACATAacacacccttctcacagacccc
ttgggccccttcccactggaaaaattgac Coding sequence (CDS) from alignment at sc0000333:278585..280613+ >TCONS_00019658 ID=TCONS_00019658|Name=TCONS_00019658|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000333:278585..280613+ (Clytia hemisphaerica)
ATGATCCGCGTCATCGCTCGTGGTGCTGGAAAAGCAACATACCTCGAAAA
CCGTTCACCCGGGGCTGCCATGAATCCTTATCTCGGCCTAGCCGGAATGG
TAGCTGCCGGACTAGATGGAATCCGGAACAAGCTGGAGTTACCAGCCGAA
GGCACCGGATTAAACGAATGCGGTAAGTTACCGGATAGCCTGGAAGATGC
TTTACAAGCTCTGGAAAATGACGGTGCTATGGTTGATCTCCTTGGACAAG
AATTTGTTAATTGGTTCACAGGAGCCAAGAGaaatgaaatggtttgttta
caaaaatacaCACAGAAACATGATGGGGATAGCTTTAAAGCCGAACTCGA
ATATTACTCACGATGGATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019658-exon-sc0000333-1491911889:278585..278917 | TCONS_00019658-exon-sc0000333-1491911889:278585..278917 | Clytia hemisphaerica | exon |
| TCONS_00019658-exon-sc0000333-1510915933:278585..278917 | TCONS_00019658-exon-sc0000333-1510915933:278585..278917 | Clytia hemisphaerica | exon |
| TCONS_00019658-exon-sc0000333-1575043694:278585..278917 | TCONS_00019658-exon-sc0000333-1575043694:278585..278917 | Clytia hemisphaerica | exon |
| TCONS_00019658-exon-sc0000333-1491911889:279534..280613 | TCONS_00019658-exon-sc0000333-1491911889:279534..280613 | Clytia hemisphaerica | exon |
| TCONS_00019658-exon-sc0000333-1510915933:279534..280613 | TCONS_00019658-exon-sc0000333-1510915933:279534..280613 | Clytia hemisphaerica | exon |
| TCONS_00019658-exon-sc0000333-1575043694:279534..280613 | TCONS_00019658-exon-sc0000333-1575043694:279534..280613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000333 | supercontig | sc0000333:278585..280613 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008146 | Gln_synth_cat_dom |
| IPR014746 | Gln_synth/guanido_kin_cat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004356 | glutamate-ammonia ligase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006807 | nitrogen compound metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006807 |
nitrogen compound metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004356 |
glutamate-ammonia ligase activity |
Blast
The following BLAST results are available for this feature:
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