TCONS_00019631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019631
Unique NameTCONS_00019631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019631 ID=TCONS_00019631|Name=TCONS_00019631|organism=Clytia hemisphaerica|type=transcript|length=1905bp
CTGTACTCTCTAtatttttagcttgaaataaaaacataaacaatCATTAA
TAAATAAACTAAACAACTATGGAGCACTGTAGAAAGTTGGTTATAGTTGG
AGATGACTCGATTGGGAAAACCAGCCTGTTATATGTTTATAAAAGTAAAC
AATTCCTAACCGACTATGTTCCAGAGGTGTTTGTTGAGGGTGGTTACTTA
GCTAAAATCACACTGGATATTGACAACTCTGTTGAATTAGTTTTTTGGGA
TACCATTGGTCATAGACAGTATGATCGCTTACGACCTTTATCTTATTATG
ATACAGATGTATTACTGTTATGTTTTGCTGTTGAACAGCCAGACAGTTTA
AAAAACATAAGCGAAAAATGGGCAGACGAAGTAAGACATTTTTGTCCCAA
AGTTCCTATAATACTTGTTGCAAATAAAACTGATCTGAGATATGATGATC
AGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCAGACGAAA
CAAGGCCAAGAAATGGCTCAGAAAATAGGTGCTTTCGCATATTTAGAATG
CTCGGCAAAGTTGAATGAAGGGGTTAAAGAAGTTTTAGATACAGCAGCAA
GAGCAGCTTCTTTGCAATCCAACAAAAAACGAAGAGGGAACAGTAGAGGT
TGCGTTTTGCTGTGatcaaattaaaatattttcctaTCCATAGGTTCTCA
TAATCATTCAAAATGACTCCCTGATTTTTGCCTTAGACActcatttttaa
acaaataacATCAAATTTACCTGAATTTACATCAAAAGGACACCaccaat
tattatttttttattttttcccagAACTGACCTTGCGAATAAGTCTTGTT
ATATAATACATACTGTCTATAATTTTAGCCTAAAAAAAGATTGTCAACAA
ACATTCATAACTGAACAATATGAATAACTACGAAGCACAATAAAAAGTTG
GTTATAGTTGGAGATGACTCGATTGGGAAAACAAGCTTGTTATGGGTCTA
TGTACGCAAACAATTTCCAACCGACTGGATTCCAACTGTGTTTGAGAGTT
ACATAGCCACAATCATATTGGATACTGATAACTTCGTTGAATTAGCTTTT
TGGGATACTGCTGGTCAAAGACAGTATGATCGCTTAAGACCTTTATCTTA
TCACTACGTTGATGTATTTCTGTTATGTTTTGCTGTTGAACAGCCAGACA
GTTTAAAAAACATTGAAGAAAAGTGGGCAAACGAAGTCAGACATTTTTGT
CCCAAAGTTCCTATAATACTTGTTGCAAATAAAACTGATCTTCGAGATGA
TGATCAGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCAGA
CGAAACAAGGCCAAGAAATGGCCCAGAAAATTGGTGCTTTCACATATTTA
GAATGCTCAGCAAAGTTGAACGAAGGGGTTAAAGAAGTTTTTGATACAGC
AGCGAGGGCTTCTTTGCAATCCATCAAAAAACGAGGTTGTGTGTTGCTAT
AATAAGgagatattgagatttattaacccgagttGAATATAAATTACCGA
GGGCTAATAAATCtaataaccaacgaaaacctattaTATGTTTTAATAAT
ATATCCAAAGGCAAAATTAAAACATTATGTAAATAGAGTCTgcctcaaaa
taatttgcagctgagacaaaaatggctgtaacttttggtagaattcgaat
caagcgATTTTATGCTTGTTGAAAAAATACTTGAGtgaaatattatcaag
taaaaaaaattgaaaaataaagaaaaatgaaaatgaaaaatgaagaagaa
aaaaatcaacttcttgtagaaatgtggtataactaccattttcacaggag
tgattcttcaatcttagatcatcatcactgtgaaaaactttttcaaaaat
attca
Run BLAST on NCBI

transcript from alignment at sc0000332:215098..217002-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019631 ID=TCONS_00019631|Name=TCONS_00019631|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at sc0000332:215098..217002- (Clytia hemisphaerica)
CTGTACTCTCTATATTTTTAGCTTGAAATAAAAACATAAACAATCATTAA
TAAATAAACTAAACAACTATGGAGCACTGTAGAAAGTTGGTTATAGTTGG
AGATGACTCGATTGGGAAAACCAGCCTGTTATATGTTTATAAAAGTAAAC
AATTCCTAACCGACTATGTTCCAGAGGTGTTTGTTGAGGGTGGTTACTTA
GCTAAAATCACACTGGATATTGACAACTCTGTTGAATTAGTTTTTTGGGA
TACCATTGGTCATAGACAGTATGATCGCTTACGACCTTTATCTTATTATG
ATACAGATGTATTACTGTTATGTTTTGCTGTTGAACAGCCAGACAGTTTA
AAAAACATAAGCGAAAAATGGGCAGACGAAGTAAGACATTTTTGTCCCAA
AGTTCCTATAATACTTGTTGCAAATAAAACTGATCTGAGATATGATGATC
AGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCAGACGAAA
CAAGGCCAAGAAATGGCTCAGAAAATAGGTGCTTTCGCATATTTAGAATG
CTCGGCAAAGTTGAATGAAGGGGTTAAAGAAGTTTTAGATACAGCAGCAA
GAGCAGCTTCTTTGCAATCCAACAAAAAACGAAGAGGGAACAGTAGAGGT
TGCGTTTTGCTGTGATCAAATTAAAATATTTTCCTATCCATAGGTTCTCA
TAATCATTCAAAATGACTCCCTGATTTTTGCCTTAGACACTCATTTTTAA
ACAAATAACATCAAATTTACCTGAATTTACATCAAAAGGACACCACCAAT
TATTATTTTTTTATTTTTTCCCAGAACTGACCTTGCGAATAAGTCTTGTT
ATATAATACATACTGTCTATAATTTTAGCCTAAAAAAAGATTGTCAACAA
ACATTCATAACTGAACAATATGAATAACTACGAAGCACAATAAAAAGTTG
GTTATAGTTGGAGATGACTCGATTGGGAAAACAAGCTTGTTATGGGTCTA
TGTACGCAAACAATTTCCAACCGACTGGATTCCAACTGTGTTTGAGAGTT
ACATAGCCACAATCATATTGGATACTGATAACTTCGTTGAATTAGCTTTT
TGGGATACTGCTGGTCAAAGACAGTATGATCGCTTAAGACCTTTATCTTA
TCACTACGTTGATGTATTTCTGTTATGTTTTGCTGTTGAACAGCCAGACA
GTTTAAAAAACATTGAAGAAAAGTGGGCAAACGAAGTCAGACATTTTTGT
CCCAAAGTTCCTATAATACTTGTTGCAAATAAAACTGATCTTCGAGATGA
TGATCAGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCAGA
CGAAACAAGGCCAAGAAATGGCCCAGAAAATTGGTGCTTTCACATATTTA
GAATGCTCAGCAAAGTTGAACGAAGGGGTTAAAGAAGTTTTTGATACAGC
AGCGAGGGCTTCTTTGCAATCCATCAAAAAACGAGGTTGTGTGTTGCTAT
AATAAGGAGATATTGAGATTTATTAACCCGAGTTGAATATAAATTACCGA
GGGCTAATAAATCTAATAACCAACGAAAACCTATTATATGTTTTAATAAT
ATATCCAAAGGCAAAATTAAAACATTATGTAAATAGAGTCTGCCTCAAAA
TAATTTGCAGCTGAGACAAAAATGGCTGTAACTTTTGGTAGAATTCGAAT
CAAGCGATTTTATGCTTGTTGAAAAAATACTTGAGTGAAATATTATCAAG
TAAAAAAAATTGAAAAATAAAGAAAAATGAAAATGAAAAATGAAGAAGAA
AAAAATCAACTTCTTGTAGAAATGTGGTATAACTACCATTTTCACAGGAG
TGATTCTTCAATCTTAGATCATCATCACTGTGAAAAACTTTTTCAAAAAT
ATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011044XLOC_011044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019631-exon-sc0000332-1575043694:215098..217002TCONS_00019631-exon-sc0000332-1575043694:215098..217002Clytia hemisphaericaexon
TCONS_00019631-exon-sc0000332-1510915933:215098..217002TCONS_00019631-exon-sc0000332-1510915933:215098..217002Clytia hemisphaericaexon
TCONS_00019631-exon-sc0000332-1491911889:215098..217002TCONS_00019631-exon-sc0000332-1491911889:215098..217002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:215098..217002 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63853	1.52835	0.645297	0.868068	6.34073	4.63095	2.56454	2.43965	1.9024	2.67698	3.75316	1.32848	0.663317	1.0873	0.970864	1.47601	1.44396	1.37112	0.730849	1.58492	1.44647	0.806326	0.898512	1.68813	0.688389	1.63832	1.07453	1.45953	1.58143	1.61122
Blast
[Close]
BLAST of TCONS_00019631 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.284e-69
Identity = 107/187 (57.22%), Postives = 139/187 (74.33%), Query Frame = 3 
Query:  948 LVIVGDDSIGKTSLLWVYVRKQFPTDWIPTVFESYIATIILDTDNFVELAFWDTAGQRQYDRLRPLSYHYVDVFLLCFAVEQPDSLKNIEEKWANEVRHFCPKVPIILVANKTDLRDDDQIIFNLNESNQEPIQTKQGQEMAQKIGAFTYLECSAKLNEGVKEVFDTAARASLQS---IKKRGCVLL 1499
            LVIVGD + GKT LL V+ + QFP  ++PTVFE+Y+A I +D    VELA WDTAGQ  YDRLRPLSY   DV L+CF+++ PDSL+NI EKW  EV+HFCP VPIILV NK DLR+D+     L +  QEP++ ++G++MA +IGAF Y+ECSAK  +GV+EVF+ A RA+LQ+    KK GC++L
Sbjct:    8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ-VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193

HSP 2 Score: 211.075 bits (536), Expect = 1.630e-63
Identity = 107/195 (54.87%), Postives = 136/195 (69.74%), Query Frame = 3 
Query:   81 RKLVIVGDDSIGKTSLLYVYKSKQFLTDYVPEVFVEGGYLAKITLDIDNSVELVFWDTIGHRQYDRLRPLSYYDTDVLLLCFAVEQPDSLKNISEKWADEVRHFCPKVPIILVANKTDLRYDDQIIFNLNESNQEPIQTKQGQEMAQKIGAFAYLECSAKLNEGVKEVLDTAARAASLQSNKKRRGNSR-GCVLL 662
            +KLVIVGD + GKT LL V+   QF   YVP VF    Y+A I +D    VEL  WDT G   YDRLRPLSY DTDV+L+CF+++ PDSL+NI EKW  EV+HFCP VPIILV NK DLR D+     L +  QEP++ ++G++MA +IGAF Y+ECSAK  +GV+EV + A RAA LQ+   RRG  + GC++L
Sbjct:    6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--ENYVADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA-LQA---RRGKKKSGCLVL 193
The following BLAST results are available for this feature:
BLAST of TCONS_00019631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA5.284e-6957.22Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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