TCONS_00019629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019629
Unique NameTCONS_00019629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019629 ID=TCONS_00019629|Name=TCONS_00019629|organism=Clytia hemisphaerica|type=transcript|length=1899bp
tataggaaaaaagaagaagaattggtacacaaaacagaaaagaagaaaca
tCATAATATCAACGAAAATACTTTCTATTCAGCTGTCTGAGCGACATACA
CATTGCAAaatcttcaaacaaaaaacatacaTATACATATACATATAAAA
CTCGAAAATTATATTGTGAGCTGCTACACTTGGATTTAGACGAACTGCCT
TAGACGAACCCGATTTATCTGTATATAGAAGAACTgctagaaaaatgaag
aagtgaTCTCAGAAAAAACGATAACCGATTGAAGAACATTTTGGATTAGG
AACAGATTCTGTTACACTTGAAATTTATGGTGATTTGAGTGCAATAATTT
TGTTGTAGAAGGAAATATggctggatttttgaaaaactttcgtAAAGAAC
AAAGTCGACCGTTGTTTGGGAAGAAGAAATTTGATGACAAATTTGAAAAG
CATTACAAACAATTAGAATTACTGGGAAAagGTGCTTTTTCAGAAGTGTT
CAAAGTGGAGAAGATGAGTGTTGGGAAGAACTATGCAGCCAAATTCATCT
CCAAGAAAACGTTGAACCCTAAAGAAGAAGCCTCCCTAGAAAGTGAAATC
TTCATCATGAAAAGGGTAAGCCATCCTAACATAGTGAGTTTAGTGGAATT
ATTCGACAATCGGAACTATCTCTACATTGTGATGGACTTAGTAACAGGTG
GCGAACTTTTCGATCGCATTGTTGAGAAAGGGATGTACACTGAAGTTGAC
GCATCAAATCTTTGCAAACAACTCTTAGAAGCTGTCAATTATATTCATAG
TTTAGGAATCATTCATCGGGACTTGAAACCCGAAAATCTACTTTATTACG
ACTCTTCAAACGATTCAAAGATAATGATCACAGATTTCGGCTTAGCTAAG
GATGATGACAATGAAATTCAACAAACTGCTTGTGGTACACCTGGATATGT
TGCTCCTGAAGTTTTGAAATTACAACCATATGGAAAACCGGTGGATTGCT
GGGCTCTTGGTGTTATAACGTACATTCTatTATGTGGTTACCCTCCATTC
TACAGTGAAGATGATCAAGAATTATATCGATATATCATGGATGCTGACTT
CGAATACGACTCTCCTTATTGGGATGAGATCTCCAAAGATGCGAAAGGTT
TTGTCGGCAATCTGATTGAGTTGGACGTCAGTAAAAGATTCGATTGCGAG
AAAGCATTACAACATCCAtgGATATCTGGAGATGCTGCTCTAAATAAAAA
CATTCATGATTCAGTATCCACACAaattaaaaaacatttcaacgCCAAAT
CAAAATGGAAGCAAGCCATTAATGCGGCCACCGCAATACGAAGAATGCAA
CAActgaaattttaagaagaataTTTTGCATCTTGAATCAAAATCAACTA
TGTACACCTTTTCATACGCAATCAACACACTAAAACTCACTTGGTGGGAA
GGCGAGGCGTGTGTGTCAAAAGGGGCGTATGATATTGTCTGTTTATCAAC
CGCCATGAATCTAAATGTGATTTTTCAAATTGGAGAAAATGATCGAAAGG
GGAAACAAAAAGTAAATTGAAGAGATCGTGATCCTCGCATTGACTTGATT
ACAAAAAAAGGGAGCGACAAAAAAGTGTTATTGAATAGAAAGAAGAATGT
TATGTATGTGTGGACAGATGATGTTTTGTTAAGTGTATTACCAGACCATC
AGTCTACTATCATAATGCTTTCAAAACCAATAATTACTACAGAGactaaa
ttcaattttattctGCACAATGATTTATGATGACATCCTGATATTTTAAA
CTCAGTTTttgaaattgacgtcaaaagggACAAAACTATGTACATTGTAT
TTTATAAGTTTTAGggttttttaaattatgttttagCATTTGATTGANN
Run BLAST on NCBI

transcript from alignment at sc0000332:119142..132810-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019629 ID=TCONS_00019629|Name=TCONS_00019629|organism=Clytia hemisphaerica|type=transcript|length=13669bp|location=Sequence derived from alignment at sc0000332:119142..132810- (Clytia hemisphaerica)
TATAGGAAAAAAGAAGAAGAATTGGTACACAAAACAGAAAAGAAGAAACA
TCATAATATCAACGAAAATACTTTCTATTCAGCTGTCTGAGCGACATACA
CATTGCAAAATCTTCAAACAAAAAACATACATATACATATACATATAAAA
CTCGAAAATTATATTGTGAGCTGCTACACTTGGATTTAGACGAACTGCCT
TAGACGAACCCGATTTATCTGTATATAGAAGAACTGCTAGAAAAATGAAG
AAGTGATCTCAGAAAAAACGATAACCGATTGAAGAACATTTTGGATTAGG
AACAGATTCTGTTACACTTGAAATTTATGGTGATTTGAGTGCAATAATTT
TGTTGTAGAAGGAAATATGGCTGGATTTTTGAAAAACTTTCGTAAAGAAC
AAAGGTTAGTAAACATTGGAGGGCTTCAGCGTTAAAATTCCTGCATTCGC
TAAAAAGACAAAAATAATAACAAATTTCACAAAACCGGCAAATTTCAATC
TGGCCCGGACAGTTTTTCCATCCCAAAGTTTTGGTTCCTTTTCAAAATTC
ACTAAAAAGCATAAATTTTCTTGTAGAAAGCACTGGAAAATTTGGAAAAC
AACTCCAATGGGTCTGTGAGACAGGGGTGTGAACAGTTTACTCTCTCTCT
AATTCGATCTTCAAAGGACCATGAAGAACTCCCTTTGAAGTATAGAAATA
TTCGAATTGACGAGAGTATATAATACGGAGTTTGAGCTAATTTTTTAGTT
TAGTTCGAATTAGAGAGAGATTAGACTAATAGAGGTTCGAATTAGAGAGG
GTTAACTGTATTCTCAATCATCTCCTTTATTTCAGTCGACCGTTGTTTGG
GAAGAAGAAATTTGATGACAAATTTGAAAAGCATTACAAACAATTAGAAT
TACTGGGAAAGTAAGTAAAGACCTACTGATATCAAATCTCTGCATACACA
TTTTTTTGATAAGAACATCTAAAATTTTTGAAGCCTTTACTTCGGATGTT
CTTAACTTTTTCAGACTTAAGCCTAAAAATGCTCTTAACATGTTCTTATT
TTCGCCATTTTGTGGGTAATATTGTGCGTTTCTAAGAAATCGGGTATTTT
AGAGTCCCTATAGCCTCAAAATGTTCTTAACTTGTTCTTAACATTTTGGC
CAGGGAAGCCTTTTGTTCTTGTATAGTTTGTTCTTATGTTTGTTATCTTA
TAAAAAACACGTACTCTTCTTCACACAAAAGGTCTCTATGTCATAGATGA
TCATAGTTCACTCTTTTATCGCCTGCTAAAAGGAATAAAAAACGATTGAA
ATCGTCACTTATTGATCCACATATCAACCCTTTAAGGCGTGACTGGCTTT
TTAGGAGGCTGGAAATGAATTTACAACGAAACGATGTCAAAATTTTGTTG
TCTATGAGAATGTTGATTTGATAACGTCAGACATTTTGACGTCATTCCTC
CATAGTAAACTCACACCCAGTCTTCTAACGCTTTAAAGGTTGATAGGTGT
AAAGCACCACACCCAAAATCTAGAACGCACTCGTTTGAGACACTTCCACA
AGGGATAGCTGATAATTCTTGATATTCATGACATAATCTTTTATACGTGA
ACACACGAAAAACACCGGGCGTTTGACACTAGTCTCATTGTTTGAATTCA
AAACTAGTGACAACGCCCAGTATTTTTCGTGTGTTCACGTATAAAAGATT
ACATCATGAATATCCAGAATAGCAGAATAAAATACTTTGATAATTGGTCA
TTTGAAGTTATAAAAATGACGCGTGCTTTAGACTGACCAACAAAGTCAAA
CAAGAGGTTGTAAAAAGTCCATCTCGTCCCAAATAAAATCAATTCCAAAA
AAATTTCATTTTAGAGGTGCTTTTTCAGAAGTGTTCAAAGTGGAGAAGAT
GAGTGTTGGGAAGAACTATGCAGCCAAATTCATCTCCAAGAAAACGTTGA
ACCCTAAAGAAGAAGCCTCCCTAGAAAGTGAAATCTTCATCATGAAAAGG
TTTGTCCACACCGTTTTTTAAATGTACGGATAATAACCTGTCTAAGTCAA
TTACCTTACCGGCCCTTTTAACACTGGCCATTTTGACGTTATTTTTGGGT
TGCAGTGGATTGAGGGCCAGCGTGAAAATGGCCGATAAAGTAATCCTTCA
AGAAATTAGGTGTTATTGGTTACATTGGATGTGATTGTCAAATCATTTCG
ATTTCGAGACCACAGTTTCAGTGATGGATCGTTCCTGGATCACTCTATGA
GGATTAGACTTTAGACTTCTTACCAGTCTTTATATAAAATAAAATAAAAA
CTTTTTATCTGAATATCTTTTAATAATTGTCTTTTCCCATTCGAAAAGAT
GTTTCAGCAAAAATGTAAACTGTGTTTTCAAGAGAGGTGAAGAAGGGGGG
TGATCGGAAAAGTGTACGTGCGCAGTTAGGGGGGAGCACTATCAAGTGCG
TACAATGGTACTCTGTACCAGAGTATATCTCACGTTTATCGCTTCGTAGT
ACACTTTGTGCGCCGATGAAATATGATTTATAAATAGCAACAATTCTCTC
ATCGTCTCCCCTCTCTCACCAGCACTCCATCGCAGCGGTCGGTTTGAAAA
ATCTCAAATGAGAAAAGACAATGACAACAGATCCTCAACGGTAATGAATT
TTGAAATTAGCCGTAGATACCGGGTCTGTGTACAGGCAAGTACAATAGGG
AAGGGAAGTCGAATTTTACCTGTATACGTACTTGTGTACTAAAGTTCCTT
CGGCTATACCTTTACTGATCGTATCTAGCGCCCTTCTAACGCCCAACTAC
GCCTTCCACGCTCCACTGGGCAGCAACTTAGCAATTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGAA
ATTGATGTATTGAGACATCTTTCAGAGTTTACGGTTTTATTGAGATATAA
TTTGAGGATATTGAGATCCTGTAGTAACTGATGTATTGAGACATCTAGAG
TAAATGATTTCACGGAGATGTGATTTGAGAATATTGAGATTTTCATTCCA
CTATAGGGCCCTATAGGGAGTGGACAATGTACTTCGGGACCCAAGCGTCC
AGGTTTTAAACTCGAAGTATGGGCCAAAAGTTTCAGATATTTTTTTTCTC
TTTTTTAGTTTTTTTCAATTTTTTTTGTTTTTTTTGAACTTTTGGTCGCA
AAAATAGAAAATGATAATTTTTTTTCAGTTAATGCGGCAAGTGTGTAGAG
ATTGTTTGATAAACGAAAATTGAAGCCGCTAGACTGCAGGTGTTTGTAAA
CGAACAGAACAAACACCTGGTTAAACAAAACGAACGATGTTTGTATATTA
GATCAGAGTTAAATTCTAGATAGACGCTGCTGATCTAATTGCGTGGGTTG
CGAAATTCGATAGGAATTCGCTCATACAATGGCTAATTTTGAGTGTCGTA
TGCCGAGTGACGAGATCGGTCGACTAAGGGGTCCAGGCACTCTACCTGAA
ATTAAACATATGCTTTCAAGTTTTTCAAGAGATTTTTAAATTTGACCTTT
TCTCAGTATCTTTCAGGAATTTTTTTATGAAAAAAGAAGCAATGACGTAC
AAGGTAAATTATGCAAACTCCGTAAGTATTCTAAAAGTACCGCAGGCATC
GTTCCGCCTTGCCTGTCTTGCCTGTATTTTTTTATCCCTAAATTCACAAT
CAATCTTCAGTTTTTTTTTTAGAAACAGATTCCACTGTAACAAAGGTCAA
CTTGCTTTCTTTCTTAAAATTTTTTTCTTGTTAAACTTTCATCTGAATGA
GGTCTGAAATTCGAGTTCTCTTCTTATCGGGTCGGAATTTAAAGGTGTAG
AAAGTTCTATAAAAAATCATTTCATTTTTAAAGGAGAGAGAGAAAAAAAA
AAAAAAGGAAACGAATAATTCGAAGTTGGGACTGCACTCCGTATTAAATT
TTTATTTTATATTCTATGTTGAATTAACGATTTTTTTTATATATATTTAT
AGTATTTGCATAGGGATTGAAGAAGACAACACGAGAAACGCCACAAACCA
ATCCTTAGTCTCCCTGAAACCAACCCTAAAACCCCTAAAACCAGAACCCA
AAAGACCTATGCCCCTCCCTGCGGTAGCTACTCATCTTCACCCATCCAAC
CAACACTTCTACAAACAACTGACTACCCAAAATGGCAACCAACACCACCA
ACGCCAAGGGAAACCTGAATCTGCTGACCTACTAAATATGACCACCAAAG
GAGAAACAAAGAGACTGGTGGCTGAGAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGATTAG
GTTCTACTCCCCTAGGTTCCTTTAGCCCGCCCCTTTCGTAGTCTAGACTC
ACTCACCCACTGCGTCTTATTCGTCTGCTAGGCAAGCACTCGGATAAGCC
ACCAGTACACTTGAATGGATCCTTAGACGTTAGTCCAAAAATACCGATTT
GGGCGTCTTCTGATCGATCATTCTTCACTTTCTTTTTAGGGTAAGCCATC
CTAACATAGTGAGTTTAGTGGAATTATTCGACAATCGGAACTATCTCTAC
ATTGTGATGGACTTGTAAGTTATTTTGTATATATTTTCGAATAATTCGTA
ATATTCATGACGATGATGAATATCCATTTACCTGATGATCGCGTAAGCGT
GAAACAGACTGTAGTGTATGTTTAAATTTTTGAAGAAAAATAAATTTTGA
TAATATTCATGACGTAATTTTTTATGTGGAAGCACCCAGAAAAGACCGGG
TGTCTGCCACTCATTTTGAATTTAAAAAATAAAACTAGTGCGCAAAGATG
TTTTGGGTACTTACCTCATAAATACTTTTTCAGATTTATCTTTGAAAAAG
ACTTCACCATCTTCTAAGGAGATCGTTCACCTGTTCAAAACATTTTGAAA
AAAATTACTTTCCTTTTTTACCTTCTTTTAGTATTGGTCAAAATAACAAG
ACTGGAATAAGCTTAGAGCTTCTAACGATAATAGTTAAGTTCAGTATATA
CTAACGACTTCATTTGGATTTGATAACCTATTTTCCTTTCTTCTCTTTAG
AGTAACAGGTGGCGAACTTTTCGATCGCATTGTTGAGAAAGGGATGTACA
CTGAAGTTGACGCATCAAATCTTTGCAAACAACTCTTAGAAGCTGTCAAT
TATATTCATAGTTTAGGAATCATTCATCGGGACTTGAAACCCGAAAATCT
ACTTTATTACGAGTACGTTATTTCATTAGATAGTGTAAGAATGTACAGTG
TCCAGGCCTCTGCTATAAATTTCGCGTCACTAATAGCCCTTTGCTTAATC
TCGCTGATGTCTTTTTGGGAAATTCAATCAAATCACTCGCATTTTCTTTC
GATATTAGTGGCAGCTAGGTTGATAATTTCAAAGGATAAAATAATTTATG
ATGTAAGTTTAGACCACGTTCACACACTACGGTTCCGTTTCGCTCCGAAA
CGTAATGAAGCCATTCTATTGGTTAAATTCAAGTTTTACGTCACTTCTAA
CCAATAGAATGACTTCATTTCGCTTCGAACCTAAGCGGAACCGTTACGTG
CTAACATGGTCTTAGATTTACGATTCAGCATCTCTGCAGCCTAAAGATCT
TATAGTTCCTGGTCGAANTTTGTATATATTTTCGAATAATTCGTAATATT
CATGACGATGATGAATATCCATTTACCTGATGATCGCGTAAGCGTGAAAC
AGACTGTAGTGTATGTTTAAATTTTTGAAGAAAAATAAATTTTGATAATA
TTCATGACGTAATTTTTTATGTGGAAGCACCCAGAAAAGACCGGGTGTCT
GCCACTCATTTTGAATTTAAAAAATAAAACTAGTGCGCAAAGATGTTTTG
GGTACTTACCTCATAAATACTTTTTCAGATTTATCTTTGAAAAAGACTTC
ACCATCTTCTAAGGAGATCGTTCACCTGTTCAAAACATTTTGAAAAAAAT
TACTTTCCTTTTTTACCTTCTTTTAGTATTGGTCAAAATAACAAGACTGG
AATAAGCTTAGAGCTTCTAACGATAATAGTTAAGTTCAGTATATACTAAC
GACTTCATTTGGATTTGATAACCTATTTTCCTTTCTTCTCTTTAGAGTAA
CAGGTGGCGAACTTTTCGATCGCATTGTTGAGAAAGGGATGTACACTGAA
GTTGACGCATCAAATCTTTGCAAACAACTCTTAGAAGCTGTCAATTATAT
TCATAGTTTAGGAATCATTCATCGGGACTTGAAACCCGAAAATCTACTTT
ATTACGAGTACGTTATTTCATTAGATAGTGTAAGAATGTACAGTGTCCAG
GCCTCTGCTATAAATTTCGCGTCACTAATAGCCCTTTGCTTAATCTCGCT
GATGTCTTTTTGGGAAATTCAATCAAATCACTCGCATTTTCTTTCGATAT
TAGTGGCAGCTAGGTTGATAATTTCAAAGGATAAAATAATTTATGATGTA
AGTTTAGACCACGTTCACACACTACGGTTCCGTTTCGCTCCGAAACGTAA
TGACGCCATTCTATTGGTTAAATTCAAGTTTTACGTCACTTCTAACCAAT
AGAATGACTTCATTTCGCTTCGAACCTAAGCGGAACCGTTACGTGCTAAC
ATGGTCTTAGATTTACGATTCAGCATCTCTGCAGCCTAAAGATCTTATAG
TTCCTGGTCGAATTCCATGACATGGATTTCTGCATCTCCACCACAGATCT
GTAAAGTCCGAAGGGCTAGATCCACGGCCTTTATCGAAAAGTGAAGCAAG
TTTTGGTAGGATTTCCTACCAAAGACTACACGTGACAACAAGCAATTTCA
CTGGTTTGAGAGATGTGAAATAGCGTTTACCACCTACTTTATCTCGCGCT
CCGAAAACAATTGAAATGATTGATATTTTTCTGCAGCTCTTCAAACGATT
CAAAGATAATGATCACAGATTTCGGCTTAGCTAAGGATGATGACAATGAA
ATTCAACAAACTGCTTGTGGTACACCTGGATATGTTGGTAAGATATTTAC
AAGTGGAAAGATCTTTTTTATGACTTTAAATTGGGTCCTGTTTCCTTGAC
GATGCTTTTTCTTTGTTTTTCCTCTATCATTGGACTTTCTCTTTGAAGGG
CATTTCAATCTCTTTTGACATAAAATTCTTTGAAAAATATACAATACAGT
TTGGTAGCCATAGATCATTTTAAAAGATCAAAATACTGAAATATAAAAAA
ATTATCTGTTAAATTCAAATTAAATTTTCAAAAAAACGCTCAGAAAAACT
TCGACAAAAAACTATGTTCTGTTTTGGAGTCTGTACGGGACTCACAAAAC
GCGAACCCTGAAAACACAAGTGAACAGATTTTACGAGAAAAAAAATTTTG
ATATTGTAACAATGATAAAACATTCTACTTGTATAATAGCAAATTAAGTT
TAATATAGATAAAGTTCTAAAAGCTCTGTAGCACTCACAATGTTTTCCCT
CCTTCTTTTCAGCTCCTGAAGTTTTGAAATTACAACCATATGGAAAACCG
GTGGATTGCTGGGCTCTTGGTGTTATAACGTACATTCTGTAAGTACCTCT
CTATCTACAGTTGCTTTGAATATCACGATATTTCTTTTCGCCCTGAAATA
CCAATGACAATACATCTTTTCGATCGTAGCCGCCAATTGTCGCGCGGGCA
TTTTTATCCGTTTTATCACCCTAATACCGTCCCAGTCTTTTTTCGCACAA
TAGAAAAAGGTGTATAAAAAGGATTGGATCGAGTTTAGGGGATAATTAAA
TAATAAAGTGCACGCACGCGCCTGACCGCGCGACTACAGTCGAAAAGGTG
TATTGTAACACTGACTAACTTAATTTCACTTAAAGCAGGCTACAACCAGA
GAACTTACTTATATATTTTGCTTACAATTCAACATCATTTTTCTTGTTTT
TAGATTATGTGGTTACCCTCCATTCTACAGTGAAGATGATCAAGAATTAT
ATCGATATATCATGGATGCTGACTTCGAATACGACTCTCCTTATTGGTAG
GATTTTAGTCATGTGGTCATAAAAGCTCTCCCCATTGGGTACATTGATCC
CTTTTTCCTTTGGTGAAAGAACTACTCTACTCTAGTCTGTGTACCATGAA
CCCCTGGCAAAATTGTATTTGATTTGTCATGCTTGTTACTTTTGTATCGG
TACTTGAATTTTGACAACTTATAATAACCATTCATATTTTCTCTGAATTT
TACTTATCTGTTTGACGGAAGTTGAACGTCATTTACTTTTATAAATTTTT
TTTTCTTGTAAAAAGTGCTCGCAGTTTGTACTCAGAGGTCTTTTCATTGG
GCTCGGCGAACGGTGAATTTCGCCAGTCCAAGGCACGAAAAAATCAGAAT
CCGCTGGTTTAGAAATACAGTTCTCCGTCTCGAGTACAGTTCTCCGTCTC
GAGTACATATTCACGCTATTCAATACACTAGGTCTGCTAAAAATTCGCCA
GCCTAAAATCTAGAATTCACAGGAGGTGATTCGTCAGCCTTTCAAAAGAC
TAATCTCGTTTTTTTTCATGTCAGGGATGAGATCTCCAAAGATGCGAAAG
GTTTTGTCGGCAATCTGATTGAGTTGGACGTCAGTAAAAGATTCGATTGC
GAGAAAGCATTACAACATCCATGGTAAGAAAAATATTTACCCTAAAAAAT
AAATAACAGCTGAAGACATTCCTCACGGTACTAGGCTGCTGGCATCCACT
AACGGATTCGTGCTGCTATACTACCTGGGGTTTTGTAGAGGTCTGCGAAT
CAGACTGCGAACCTCGTTCTCAAAGACTTGTTGCTACGATACTTCAACGT
CGTCAGACATAATTTATGTTTGCAAGCGTTTTCGGTTTTGAAAACAATCT
TTTTGGAAAATATATTACTTGTGTAGATGTGGTTTATTTGAAAAGGAGGC
CCGCAAGCCCGCAATGCTGTTGATTTATCTCTAGAAGTGTGTATTTCTTG
TTAAAAAAATAACAATTTGGTCCGAATTAAAGATAAATGCAAATTATAAA
AAGCATTTTAGAAAAATTAGTTCGAAAGATTCAAATAATACATGTTCGAA
TAAGCGAGACTGTTTATAGATATTTATCCGAGTTAGTGAGACTGATTGGT
AACTTTGTTACTTATATTTGATTTGACCTTCCCCGTCAGAAGCCATTTGA
ACCTTTTAATCAATTATGTTCTTTCTGATTAATTCAAAACAATCTTTTTT
TTCTCAATCAGGATATCTGGAGATGCTGCTCTAAATAAAAACATTCATGA
TTCAGTATCCACACAAATTAAAAAACATTTCAACGCCAAATCAAAATGGA
AGGTAGGTCGCTTATTCTCCGAAATAAAAATTCTTCATTTATGTTTTCGA
ATTTCACCGAGGTATTAATCGAGGTTTGTGAAATGGTACAATTTTATACT
CTAGTATTCCTCTGACCCCCGGGGTACTAGGGTTGCGAGCTGACGGGTGG
GTGCCGCCCGACTTTTGACCCTTGGACCCTTACCGGGACTAAAAAGGAGA
AAACAAAAGAAAATTTTGTGAATTTTACGACCCTTATTGGGACAATTTTG
ACCAAATTTCGGTCTTTCCGGGGGTAAAGTTGAAATTTTCCTATTTCTGC
GACCCTTAGCGGGACTGAAATTTTTCCGACCCTTAGCTTTGGAAATCCAA
AAAAGGTACCCTTAAGGTACCGTACCCTCCATTTGCATTAGTCCCCCCCC
CCCCCCCCCTTTTAATTACCCCCCCCCCCCCCCGCCTCTGACATTGCGTC
ACGTTTACAAATCTGATTTGTTTCGTGTGTCGTGTAGGAGAAAGAGTAGA
AAGGTTGCATTATTTCGTAAAGTCATTGCAGTGGTGCATATTAGAAATGC
ACCATATCATTGCAAGTTGACTCCTTTTATTCAGAAGTTTTGTAGAAATG
TACCTATCAATCCTAAATGCTAAAAAAAAAGGTTTGGATCGAGTAAAGTT
TTTTTGCGCTTTAAGCTTTGAAAATTGGAATTATTTAGCTTTATCTTAAC
GTTTATACGTTTTTTTTTTTAATGTCCTTAAATTGTTCTTATTTTCAGCA
TTTTAAGAGTATTTTTGTCCATTTTCCTATGAAATCGGGTGTTTTAGAGT
CTGCAAACCCGGCCATCGAAGCTTTATGTTCTTGTATAGTTTGATCTTAT
GAATAATAGTGTGTTCATCTTTCTTTTACAGCAAGCCATTAATGCGGCCA
CCGCAATACGAAGAATGCAACAACTGAAATTTTAAGAAGAATATTTTGCA
TCTTGAATCAAAATCAACTATGTACACCTTTTCATACGCAATCAACACAC
TAAAACTCACTTGGTGGGAAGGCGAGGCGTGTGTGTCAAAAGGGGCGTAT
GATATTGTCTGTTTATCAACCGCCATGAATCTAAATGTGATTTTTCAAAT
TGGAGAAAATGATCGAAAGGGGAAACAAAAAGTAAATTGAAGAGATCGTG
ATCCTCGCATTGACTTGATTACAAAAAAAGGGAGCGACAAAAAAGTGTTA
TTGAATAGAAAGAAGAATGTTATGTATGTGTGGACAGATGATGTTTTGTT
AAGTGTATTACCAGACCATCAGTCTACTATCATAATGCTTTCAAAACCAA
TAATTACTACAGAGACTAAATTCAATTTTATTCTGCACAATGATTTATGA
TGACATCCTGATATTTTAAACTCAGTTTTTGAAATTGACGTCAAAAGGGA
CAAAACTATGTACATTGTATTTTATAAGTTTTAGGGTTTTTTAAATTATG
TTTTAGCATTTGATTGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011043XLOC_011043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019629-exon-sc0000332-1575043694:132407..132810TCONS_00019629-exon-sc0000332-1575043694:132407..132810Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:131901..131975TCONS_00019629-exon-sc0000332-1575043694:131901..131975Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:130812..130946TCONS_00019629-exon-sc0000332-1575043694:130812..130946Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:125347..125421TCONS_00019629-exon-sc0000332-1575043694:125347..125421Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:124699..124860TCONS_00019629-exon-sc0000332-1575043694:124699..124860Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:122924..123024TCONS_00019629-exon-sc0000332-1575043694:122924..123024Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:122373..122448TCONS_00019629-exon-sc0000332-1575043694:122373..122448Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:121915..122007TCONS_00019629-exon-sc0000332-1575043694:121915..122007Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:121288..121386TCONS_00019629-exon-sc0000332-1575043694:121288..121386Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:120609..120699TCONS_00019629-exon-sc0000332-1575043694:120609..120699Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1575043694:119142..119729TCONS_00019629-exon-sc0000332-1575043694:119142..119729Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:132407..132810TCONS_00019629-exon-sc0000332-1510915933:132407..132810Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:131901..131975TCONS_00019629-exon-sc0000332-1510915933:131901..131975Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:130812..130946TCONS_00019629-exon-sc0000332-1510915933:130812..130946Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:125347..125421TCONS_00019629-exon-sc0000332-1510915933:125347..125421Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:124699..124860TCONS_00019629-exon-sc0000332-1510915933:124699..124860Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:122924..123024TCONS_00019629-exon-sc0000332-1510915933:122924..123024Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:122373..122448TCONS_00019629-exon-sc0000332-1510915933:122373..122448Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:121915..122007TCONS_00019629-exon-sc0000332-1510915933:121915..122007Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:121288..121386TCONS_00019629-exon-sc0000332-1510915933:121288..121386Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:120609..120699TCONS_00019629-exon-sc0000332-1510915933:120609..120699Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1510915933:119142..119729TCONS_00019629-exon-sc0000332-1510915933:119142..119729Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:132407..132810TCONS_00019629-exon-sc0000332-1491911889:132407..132810Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:131901..131975TCONS_00019629-exon-sc0000332-1491911889:131901..131975Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:130812..130946TCONS_00019629-exon-sc0000332-1491911889:130812..130946Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:125347..125421TCONS_00019629-exon-sc0000332-1491911889:125347..125421Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:124699..124860TCONS_00019629-exon-sc0000332-1491911889:124699..124860Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:122924..123024TCONS_00019629-exon-sc0000332-1491911889:122924..123024Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:122373..122448TCONS_00019629-exon-sc0000332-1491911889:122373..122448Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:121915..122007TCONS_00019629-exon-sc0000332-1491911889:121915..122007Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:121288..121386TCONS_00019629-exon-sc0000332-1491911889:121288..121386Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:120609..120699TCONS_00019629-exon-sc0000332-1491911889:120609..120699Clytia hemisphaericaexon
TCONS_00019629-exon-sc0000332-1491911889:119142..119729TCONS_00019629-exon-sc0000332-1491911889:119142..119729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:119142..132810 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0419855	0.0409425	0.106961	0.0813901	1.005	0.704682	11.1197	12.0146	7.45641	6.486	5.26395	4.80948	10.9738	8.14859	3.83836	3.83772	14.4512	20.9419	19.013	19.6389	19.343	18.8004	4.98246	6.35701	7.56183	10.3695	7.13874	6.58952	2.22518	1.7211
Blast
[Close]
BLAST of TCONS_00019629 vs. Swiss-Prot (Human)
Match: KCC1D (Calcium/calmodulin-dependent protein kinase type 1D OS=Homo sapiens GN=CAMK1D PE=1 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.950e-127
Identity = 178/298 (59.73%), Postives = 235/298 (78.86%), Query Frame = 1 
Query:  466 ELLGKGAFSEVFKVEKMSVGKNYAAKFISKKTLNPKEEASLESEIFIMKRVSHPNIVSLVELFDNRNYLYIVMDLVTGGELFDRIVEKGMYTEVDASNLCKQLLEAVNYIHSLGIIHRDLKPENLLYYDSSNDSKIMITDFGLAK-DDDNEIQQTACGTPGYVAPEVLKLQPYGKPVDCWALGVITYILLCGYPPFYSEDDQELYRYIMDADFEYDSPYWDEISKDAKGFVGNLIELDVSKRFDCEKALQHPWISGDAALNKNIHDSVSTQIKKHFNAKSKWKQAINAATAIRRMQQL 1356
            E LG GAFSEV   E+ + GK +A K I KK L  KE +S+E+EI +++++ H NIV+L +++++ N+LY+VM LV+GGELFDRIVEKG YTE DAS L +Q+L+AV Y+H +GI+HRDLKPENLLYY    +SKIMI+DFGL+K +   ++  TACGTPGYVAPEVL  +PY K VDCW++GVI YILLCGYPPFY E+D +L+  I+ A++E+DSPYWD+IS  AK F+ NL+E D +KR+ CE+A +HPWI+GD ALNKNIH+SVS QI+K+F AKSKW+QA NA   +R M++L
Sbjct:   27 ETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKNF-AKSKWRQAFNATAVVRHMRKL 322
The following BLAST results are available for this feature:
BLAST of TCONS_00019629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCC1D1.950e-12759.73Calcium/calmodulin-dependent protein kinase type 1... [more]
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