|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019615 ID=TCONS_00019615|Name=TCONS_00019615|organism=Clytia hemisphaerica|type=transcript|length=646bp
AGCGAATCGAGCGAATCAGACGATAAAAGTCAAGAGAATAGCTATGCCTT
TGCTGCCATCGCTGGAAACCTTCCTGACCCAAGTAATCCGATGTCAATTG
GTAATTATCGAAGTATACCGAGCAGTTGGAGGATCATACATTTAGGAGAT
GAATTGACCCCAGTTTATGATTTTCTCAGCCAAGATGCAAAGGATAAATT
AAACAGCTTTCCTGGTGGGCCAGACAGTTATGGATATAACACTCTTCACC
AGAACGAATATATTGAcatgggaaaaatgaaaatatcaacaaatcaCAAA
TATAAAGTTTTAATGCGAAAAAACTTAGTTATCCTTGGTCCGGATGGCGA
AACACGATGGGAATcaaaaactgaaactgaaattcCGATATCTTTGAAAG
GAGCCTGTTTAGATTCGGATGGACGATTATCAGTGGTAGCTGTCTTGGTG
GCGTATGGCGTCGTATGGCATTCAGAGAAAGGTGGTGCAAAGTACATGGT
CATCGAGGATGACGGATATTTCAGAGGATATAATGACAACGATAAGGTAG
TTTTTTCTTATCCAGAAAATTAAGAACTTAACAATTTTACAATGATTCAT
ATAATCAATATTAAAGGACACAATTTTACTTATTTTAATTACAAAG Run BLAST on NCBI protein sequence of TCONS_00019615-protein >TCONS_00019615-protein ID=TCONS_00019615-protein|Name=TCONS_00019615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
SESSESDDKSQENSYAFAAIAGNLPDPSNPMSIGNYRSIPSSWRIIHLGD
ELTPVYDFLSQDAKDKLNSFPGGPDSYGYNTLHQNEYIDMGKMKISTNHK
YKVLMRKNLVILGPDGETRWESKTETEIPISLKGACLDSDGRLSVVAVLV
AYGVVWHSEKGGAKYMVIEDDGYFRGYNDNDKVVFSYPEN Run BLAST on NCBI transcript from alignment at sc0000332:310868..312368+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019615 ID=TCONS_00019615|Name=TCONS_00019615|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at sc0000332:310868..312368+ (Clytia hemisphaerica)
AGCGAATCGAGCGAATCAGACGATAAAAGTCAAGAGAATAGCTATGCCTT
TGCTGCCATCGCTGGAAACCTTCCTGACCCAAGTAATCCGATGTCAATTG
GTAATTATCGAAGTATACCGAGCAGTTGGAGGATCATACATTTAGGAGAT
GAATTGACCCCAGTTTATGATTTTCTCAGCCAAGATGCAAAGGATAAATT
AAACAGCTGTAAGTATATTAAAGgaataattttttaaagactttattcCT
CAAATTGAAGAAATACCCTCTATCTAGAATACATAAAACAGATTCATTCG
CGTCCCTCTGATATTGAATTTTAGTAGGGGGATGCTTAGGATTCGTGACA
TCTTTGGTGGGACGCAACTGCATATGATTAATTCGAAAGTAGATaggatt
ttaaaactttttttagaagGGGCCCACGAATTAAGTGTGAAAATTCTGAG
TTAAAAAGTAAACTACAATAAGTCTTTTAAGAcaattttcatttaaagtt
cGAAATCCTGTGAAGTTTGTTGCGTTTTAGActaaatttgacgtcaatca
tACTCTAACTGACATCATTTTAAACTTCAACAACCTGTATTTCTTTATAT
GTTTGAGTGCAAGACTTGTTGTTGCTCAGAATTTCACGTCACCCTCATTT
TTTGCCTAATTTGGGGGTTAGGAGTTTTGCCTACAAAactttctttctct
tcttttccAGCCCTAATTTGCAGACtccttatcaaaaaaaatttaaaaat
cctaAGGTTAGCCCCCTACTATTATACTTACAAACTAAATCTGcgtgaaa
tttcaaactcaaaataacactttttttcaaagaatgggTATTTTCATGGC
CGTTtttagctggcacacaacgttgcttcaacgttcatctaacggtATAT
GGTCGTTGTGAACGTtggataaacgttgaaacaacgttgtgtgcctgctG
GGCAGGCTCTTTCACGAAGTTAAATCTTGATTACTACATAAATTGCTATT
AAATCCTATCTTATAGTTGGACCTTGTGCCCGTTTGGATTATCTTATTAT
CTTACTTTTTTAGTTCCTGGTGGGCCAGACAGTTATGGATATAACACTCT
TCACCAGAACGAATATATTGAcatgggaaaaatgaaaatatcaacaaatc
aCAAATATAAAGTTTTAATGCGAAAAAACTTAGTTATCCTTGGTCCGGAT
GGCGAAACACGATGGGAATcaaaaactgaaactgaaattcCGATATCTTT
GAAAGGAGCCTGTTTAGATTCGGATGGACGATTATCAGTGGTAGCTGTCT
TGGTGGCGTATGGCGTCGTATGGCATTCAGAGAAAGGTGGTGCAAAGTAC
ATGGTCATCGAGGATGACGGATATTTCAGAGGATATAATGACAACGATAA
GGTAGTTTTTTCTTATCCAGAAAATTAAGAACTTAACAATTTTACAATGA
TTCATATAATCAATATTAAAGGACACAATTTTACTTATTTTAATTACAAA
G Coding sequence (CDS) from alignment at sc0000332:310868..312368+ >TCONS_00019615 ID=TCONS_00019615|Name=TCONS_00019615|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000332:310868..312368+ (Clytia hemisphaerica)
AGCGAATCGAGCGAATCAGACGATAAAAGTCAAGAGAATAGCTATGCCTT
TGCTGCCATCGCTGGAAACCTTCCTGACCCAAGTAATCCGATGTCAATTG
GTAATTATCGAAGTATACCGAGCAGTTGGAGGATCATACATTTAGGAGAT
GAATTGACCCCAGTTTATGATTTTCTCAGCCAAGATGCAAAGGATAAATT
AAACAGCTTTCCTGGTGGGCCAGACAGTTATGGATATAACACTCTTCACC
AGAACGAATATATTGAcatgggaaaaatgaaaatatcaacaaatcaCAAA
TATAAAGTTTTAATGCGAAAAAACTTAGTTATCCTTGGTCCGGATGGCGA
AACACGATGGGAATcaaaaactgaaactgaaattcCGATATCTTTGAAAG
GAGCCTGTTTAGATTCGGATGGACGATTATCAGTGGTAGCTGTCTTGGTG
GCGTATGGCGTCGTATGGCATTCAGAGAAAGGTGGTGCAAAGTACATGGT
CATCGAGGATGACGGATATTTCAGAGGATATAATGACAACGATAAGGTAG
TTTTTTCTTATCCAGAAAATTAAAGCGAATCGAGCGAATCAGACGATAAA
AGTCAAGAGAATAGCTATGCCTTTGCTGCCATCGCTGGAAACCTTCCTGA
CCCAAGTAATCCGATGTCAATTGGTAATTATCGAAGTATACCGAGCAGTT
GGAGGATCATACATTTAGGAGATGAATTGACCCCAGTTTATGATTTTCTC
AGCCAAGATGCAAAGGATAAATTAAACAGCTTTCCTGGTGGGCCAGACAG
TTATGGATATAACACTCTTCACCAGAACGAATATATTGAcatgggaaaaa
tgaaaatatcaacaaatcaCAAATATAAAGTTTTAATGCGAAAAAACTTA
GTTATCCTTGGTCCGGATGGCGAAACACGATGGGAATcaaaaactgaaac
tgaaattcCGATATCTTTGAAAGGAGCCTGTTTAGATTCGGATGGACGAT
TATCAGTGGTAGCTGTCTTGGTGGCGTATGGCGTCGTATGGCATTCAGAG
AAAGGTGGTGCAAAGTACATGGTCATCGAGGATGACGGATATTTCAGAGG
ATATAATGACAACGATAAGGTAGTTTTTTCTTATCCAGAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019615-exon-sc0000332-1491911889:310868..311075 | TCONS_00019615-exon-sc0000332-1491911889:310868..311075 | Clytia hemisphaerica | exon |
| TCONS_00019615-exon-sc0000332-1510915933:310868..311075 | TCONS_00019615-exon-sc0000332-1510915933:310868..311075 | Clytia hemisphaerica | exon |
| TCONS_00019615-exon-sc0000332-1575043694:310868..311075 | TCONS_00019615-exon-sc0000332-1575043694:310868..311075 | Clytia hemisphaerica | exon |
| TCONS_00019615-exon-sc0000332-1491911889:311931..312368 | TCONS_00019615-exon-sc0000332-1491911889:311931..312368 | Clytia hemisphaerica | exon |
| TCONS_00019615-exon-sc0000332-1510915933:311931..312368 | TCONS_00019615-exon-sc0000332-1510915933:311931..312368 | Clytia hemisphaerica | exon |
| TCONS_00019615-exon-sc0000332-1575043694:311931..312368 | TCONS_00019615-exon-sc0000332-1575043694:311931..312368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:310868..312368 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001480 | Bulb-type_lectin_dom |
Blast
The following BLAST results are available for this feature:
|
