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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019571 ID=TCONS_00019571|Name=TCONS_00019571|organism=Clytia hemisphaerica|type=transcript|length=1360bp
TTTTGGTGATCAAAAATATCCcaataagaaatatttaaaagcgATTATCA
TTGTGCTATTCTCCGCAATAAGGTAGATTAAAATAACGAAGGGACATTAT
AAAATTGGATTTATAGAAACCACGAGTTGATCTGATATTTCAAAACCTAg
atgaaatttcaaattcgcaAAGGAGGTTGTTTTTGAAGCTTATGGTGCAT
AGAGAAAAACAAGCGAAGATTAAAATTAAGCGAAACGAAACCatagtcaa
aatcaaaaaaagccAGAACACCGAATTTTTCAATCCTACAAGACGTCGTG
TGCCCACCGGTACATATTTCacggaaaaaaaaagaaagatggcTACCGTT
GCTTCGAATTACACTTTACCGGCGAACAAAAGTGAAAATACTTATAAAAA
GAACGATCATAATTTAATGCATACAATTTTATTATCTGGCTATTCTTTGT
TATTTGTAGCTGGTGTAATTGGGAATGCTTTTGTTCTAATTACGACATGT
GTTCGAAAAcgaaaaagtgacaaaatgaGATCGTACAATTTGTTGATTAT
ATCCTTAGCGTTAGCTGATCTGATTGGTTCGTTTTTTGCGCCATTTGTTA
TGATTACACATCTAGTGAAATCATTTTCTTGGGGTGGAATGGGTGATATT
GGTTGCAAGGTTTTCTCATCTATGACTCTACTTGGTTCATTAGCGTCCGC
ATGGACCATAGTGGCAATCGCACTGTCTCGTTTCAGGATTTTCAAGCAGA
CTACATTCACCGTTGAGAGCGGGGGTGCCAAAACTATGTGTCAAATCTTG
CTGGTTTGGTTTTTCTCCATCGCTATTACGTCATCTTACACTGCAAAAAT
CGAAATGCGTAACGGAAAATGCTCAGTCGACTGGACCCCAATGCATCGCT
TCATTtgctcaattttatttttaagcttCACCAATATTATACCAATCATT
ATTTTATGCTGGGCACATTTGAAGTCGGTCCGTAGTTTTCGACATTCCAT
TAAAGAAGCACAAGCCAAGTTGGGCATCAAACGCGACAAACAAGTTCAGA
AAATCACGAATTTATTTTCGTTAATCACGACCACATTCTTCATACTCGTC
ACGCCATATACTTGTTTATACCTTGTCATCGCGTATACTAAATTTACACA
ACAGCGTCTGGGAAATATCAAAGTTTACATGTATCTGTATCACGGATTGT
ATTTATTATCATGCTGTAATTTCGTGGTGAATCCATATTTTTATGCTTCA
AACATAAAGTTTAGGCCATTGATCAACAAATTGACTGTGTTATTAAAACA
TATCTTTGGGTATTTATGGAAAAAAGAAGAACTACCACATGCCTTATAAG
ATGATTTTTC Run BLAST on NCBI protein sequence of TCONS_00019571-protein >TCONS_00019571-protein ID=TCONS_00019571-protein|Name=TCONS_00019571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MVHREKQAKIKIKRNETIVKIKKSQNTEFFNPTRRRVPTGTYFTEKKRKM
ATVASNYTLPANKSENTYKKNDHNLMHTILLSGYSLLFVAGVIGNAFVLI
TTCVRKRKSDKMRSYNLLIISLALADLIGSFFAPFVMITHLVKSFSWGGM
GDIGCKVFSSMTLLGSLASAWTIVAIALSRFRIFKQTTFTVESGGAKTMC
QILLVWFFSIAITSSYTAKIEMRNGKCSVDWTPMHRFICSILFLSFTNII
PIIILCWAHLKSVRSFRHSIKEAQAKLGIKRDKQVQKITNLFSLITTTFF
ILVTPYTCLYLVIAYTKFTQQRLGNIKVYMYLYHGLYLLSCCNFVVNPYF
YASNIKFRPLINKLTVLLKHIFGYLWKKEELPHAL Run BLAST on NCBI transcript from alignment at sc0000331:165123..167210+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019571 ID=TCONS_00019571|Name=TCONS_00019571|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at sc0000331:165123..167210+ (Clytia hemisphaerica)
TTTTGGTGATCAAAAATATCCcaataagaaatatttaaaagcgATTATCA
TTGTGCTATTCTCCGCAATAAGGTAGATTAAAATAACGAAGGGACATTAT
AAAATTGGATTTATAGAAACCACGAGTTGATCTGATATTTCAAAACCTAg
atgaaatttcaaattcgcaAAGGAGGTTGTTTTTGAAGCTTATGGTGCAT
AGAGAAAAACAAGCGAAGATTAAAATTAAGCGAAACGAAACCatagtcaa
aatcaaaaaaagccAGAACACCGAATTTTTCAATCCTACAAGACGTCGTG
TGCCCACCGGTACATATTTCacggaaaaaaaaagaaagatggcTACCGTT
GCTTCGAATTACACTTTACCGGCGAACAAAAGTGAAAATACTTATAAAAA
GAACGATCATAATTTAATGCATACAATTTTATTATCTGGCTATTCTTTGT
TATTTGTAGCTGGTGTAATTGGGAATGCTTTTGTTCTAATTACGACATGT
GTTCGAAAAcgaaaaagtgacaaaatgaGATCGTACAATTTGTTGATTAT
ATCCTTAGCGTTAGCTGATCTGATTGGTTCGTTTTTTGCGCCATTTGTTA
TGATTACACATCTAGTGAAATCATTTTCTTGGGGTGGAATGGGTGATATT
GGTTGCAAGGTTTTCTCATCTATGACTCTACTTGGTTCATTAGCGTCCGC
ATGGACCATAGTGGCAATCGCACTGTCTCGTTTCAGGTAATAAAACTTTT
ATGGTATTTTATTCCAATTCTAACAAGCGTATAATTTTCTTAGTTTCAGT
CCGGTGAGACACTCACGGTACATGACTTACTTTGACACTTGCAACACTTA
AGGGAAGCTTTTCAGGCTTGCTGTCCGCTGTAAATGGCTGGGAAGTGAGA
AAAACGAGATCTTGGgctactttttttgaaaaatccgaCCATTTCTCCCT
AAAATGAACGAAAAATTGTTTGCTTTTAGTTCAATTTAGCTCAAATTTGG
TACATATGTCTTTCTCCTCGGGTTCCAGTAATTCCTGCTCAAAAAGTTTT
TACGTGTACGAGTTACAATATAACTTTAAAATTTTACGATTATGGTTTTC
TGGTTGACTTGGAAGAAGAGAAAGGATTGAaagagagaaaatgaaaaatt
ctttaatttaGTGTTCGTCAATGTAACCGAAAAGACCGAAAAGGTTTCCT
CTCAAGCCTTAACAGTGGTAGATTATATCTTTGTTTGGACGTTTAGATAT
GACGTTCGGTTATGAAACTTTAATATTTGCGAACAAGAACAACCATGGGA
ACTACCGGGTGTAGATCAGATCGCTGTTTTCAGTACTGTTAaatgataaa
caaaaataaagagattttgaaaatatttaaaatgaagtaaGCCCTTTTAA
TCTTCACTTGAGAttcaaaatcgtcatttttaaaTCTTCATTCTCTGTTC
TTTTCATTGTTTAGGATTTTCAAGCAGACTACATTCACCGTTGAGAGCGG
GGGTGCCAAAACTATGTGTCAAATCTTGCTGGTTTGGTTTTTCTCCATCG
CTATTACGTCATCTTACACTGCAAAAATCGAAATGCGTAACGGAAAATGC
TCAGTCGACTGGACCCCAATGCATCGCTTCATTtgctcaattttattttt
aagcttCACCAATATTATACCAATCATTATTTTATGCTGGGCACATTTGA
AGTCGGTCCGTAGTTTTCGACATTCCATTAAAGAAGCACAAGCCAAGTTG
GGCATCAAACGCGACAAACAAGTTCAGAAAATCACGAATTTATTTTCGTT
AATCACGACCACATTCTTCATACTCGTCACGCCATATACTTGTTTATACC
TTGTCATCGCGTATACTAAATTTACACAACAGCGTCTGGGAAATATCAAA
GTTTACATGTATCTGTATCACGGATTGTATTTATTATCATGCTGTAATTT
CGTGGTGAATCCATATTTTTATGCTTCAAACATAAAGTTTAGGCCATTGA
TCAACAAATTGACTGTGTTATTAAAACATATCTTTGGGTATTTATGGAAA
AAAGAAGAACTACCACATGCCTTATAAGATGATTTTTC Coding sequence (CDS) from alignment at sc0000331:165123..167210+ >TCONS_00019571 ID=TCONS_00019571|Name=TCONS_00019571|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000331:165123..167210+ (Clytia hemisphaerica)
ATGGTGCATAGAGAAAAACAAGCGAAGATTAAAATTAAGCGAAACGAAAC
CatagtcaaaatcaaaaaaagccAGAACACCGAATTTTTCAATCCTACAA
GACGTCGTGTGCCCACCGGTACATATTTCacggaaaaaaaaagaaagatg
gcTACCGTTGCTTCGAATTACACTTTACCGGCGAACAAAAGTGAAAATAC
TTATAAAAAGAACGATCATAATTTAATGCATACAATTTTATTATCTGGCT
ATTCTTTGTTATTTGTAGCTGGTGTAATTGGGAATGCTTTTGTTCTAATT
ACGACATGTGTTCGAAAAcgaaaaagtgacaaaatgaGATCGTACAATTT
GTTGATTATATCCTTAGCGTTAGCTGATCTGATTGGTTCGTTTTTTGCGC
CATTTGTTATGATTACACATCTAGTGAAATCATTTTCTTGGGGTGGAATG
GGTGATATTGGTTGCAAGGTTTTCTCATCTATGACTCTACTTGGTTCATT
AGCGTCCGCATGGACCATAGTGGCAATCGCACTGTCTCGTTTCAGGATTT
TCAAGCAGACTACATTCACCGTTGAGAGCGGGGGTGCCAAAACTATGTGT
CAAATCTTGCTGGTTTGGTTTTTCTCCATCGCTATTACGTCATCTTACAC
TGCAAAAATCGAAATGCGTAACGGAAAATGCTCAGTCGACTGGACCCCAA
TGCATCGCTTCATTtgctcaattttatttttaagcttCACCAATATTATA
CCAATCATTATTTTATGCTGGGCACATTTGAAGTCGGTCCGTAGTTTTCG
ACATTCCATTAAAGAAGCACAAGCCAAGTTGGGCATCAAACGCGACAAAC
AAGTTCAGAAAATCACGAATTTATTTTCGTTAATCACGACCACATTCTTC
ATACTCGTCACGCCATATACTTGTTTATACCTTGTCATCGCGTATACTAA
ATTTACACAACAGCGTCTGGGAAATATCAAAGTTTACATGTATCTGTATC
ACGGATTGTATTTATTATCATGCTGTAATTTCGTGGTGAATCCATATTTT
TATGCTTCAAACATAAAGTTTAGGCCATTGATCAACAAATTGACTGTGTT
ATTAAAACATATCTTTGGGTATTTATGGAAAAAAGAAGAACTACCACATG
CCTTATAAATGGTGCATAGAGAAAAACAAGCGAAGATTAAAATTAAGCGA
AACGAAACCatagtcaaaatcaaaaaaagccAGAACACCGAATTTTTCAA
TCCTACAAGACGTCGTGTGCCCACCGGTACATATTTCacggaaaaaaaaa
gaaagatggcTACCGTTGCTTCGAATTACACTTTACCGGCGAACAAAAGT
GAAAATACTTATAAAAAGAACGATCATAATTTAATGCATACAATTTTATT
ATCTGGCTATTCTTTGTTATTTGTAGCTGGTGTAATTGGGAATGCTTTTG
TTCTAATTACGACATGTGTTCGAAAAcgaaaaagtgacaaaatgaGATCG
TACAATTTGTTGATTATATCCTTAGCGTTAGCTGATCTGATTGGTTCGTT
TTTTGCGCCATTTGTTATGATTACACATCTAGTGAAATCATTTTCTTGGG
GTGGAATGGGTGATATTGGTTGCAAGGTTTTCTCATCTATGACTCTACTT
GGTTCATTAGCGTCCGCATGGACCATAGTGGCAATCGCACTGTCTCGTTT
CAGGATTTTCAAGCAGACTACATTCACCGTTGAGAGCGGGGGTGCCAAAA
CTATGTGTCAAATCTTGCTGGTTTGGTTTTTCTCCATCGCTATTACGTCA
TCTTACACTGCAAAAATCGAAATGCGTAACGGAAAATGCTCAGTCGACTG
GACCCCAATGCATCGCTTCATTtgctcaattttatttttaagcttCACCA
ATATTATACCAATCATTATTTTATGCTGGGCACATTTGAAGTCGGTCCGT
AGTTTTCGACATTCCATTAAAGAAGCACAAGCCAAGTTGGGCATCAAACG
CGACAAACAAGTTCAGAAAATCACGAATTTATTTTCGTTAATCACGACCA
CATTCTTCATACTCGTCACGCCATATACTTGTTTATACCTTGTCATCGCG
TATACTAAATTTACACAACAGCGTCTGGGAAATATCAAAGTTTACATGTA
TCTGTATCACGGATTGTATTTATTATCATGCTGTAATTTCGTGGTGAATC
CATATTTTTATGCTTCAAACATAAAGTTTAGGCCATTGATCAACAAATTG
ACTGTGTTATTAAAACATATCTTTGGGTATTTATGGAAAAAAGAAGAACT
ACCACATGCCTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019571-exon-sc0000331-1491911889:165123..165858 | TCONS_00019571-exon-sc0000331-1491911889:165123..165858 | Clytia hemisphaerica | exon |
| TCONS_00019571-exon-sc0000331-1510915933:165123..165858 | TCONS_00019571-exon-sc0000331-1510915933:165123..165858 | Clytia hemisphaerica | exon |
| TCONS_00019571-exon-sc0000331-1575043694:165123..165858 | TCONS_00019571-exon-sc0000331-1575043694:165123..165858 | Clytia hemisphaerica | exon |
| TCONS_00019571-exon-sc0000331-1491911889:166587..167210 | TCONS_00019571-exon-sc0000331-1491911889:166587..167210 | Clytia hemisphaerica | exon |
| TCONS_00019571-exon-sc0000331-1510915933:166587..167210 | TCONS_00019571-exon-sc0000331-1510915933:166587..167210 | Clytia hemisphaerica | exon |
| TCONS_00019571-exon-sc0000331-1575043694:166587..167210 | TCONS_00019571-exon-sc0000331-1575043694:166587..167210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:165123..167210 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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