TCONS_00019559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019559
Unique NameTCONS_00019559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019559 ID=TCONS_00019559|Name=TCONS_00019559|organism=Clytia hemisphaerica|type=transcript|length=1918bp
ATTTCTTTAggtgaaaaataaaaagtatgaACAATGTTTGACGCTTATCA
AAGTGGTGAGGATGGCCACCGGAGAATCAAGTACTGAAGACGaattgtca
cgtgatttctcaACATTGAGTACATCCTCCTCTGTTACAAGTTCCATAAG
TAGAAAAAGTAATGCAAGTACGTTAAAAGATGACCAAGATGGTGAAGATT
TATCTCGTCAAGGAACAACAATGTCGGATGAATCAACGTCATCCCGACCG
ACCTCTGGACTATCGNTATCTCGTCAAGGAACGACAATGTCGGATGAATC
AACGTCATCCCGACCGACCTCTGGACTATCGTCGGTAGCTACTGCTTCCC
GACAAAATACGGTTGGTTCGTTAAGAAGTGAGAATAATTCACGACAATCT
CAACGATCGCTTTCTAGAGGAAGCACTATTCGAAATGATGATCCCGAAGT
GAAGAATAATTCGGTTTCACGAGAATCTTCTGTCTTGTCTTCTCGGAATG
GATATGATGACGATTTTCATGACGACGAAGAATCCAGTCCAACTTCGGCA
TCAAGCCGACAACAGTCGTTTGTCGGGAAATCACCAAGTAATGATAATAG
TGATGATACTGAGAGCGAAAGTGAAGATATGGGGAAAATGGAGAAAGAAA
ACagtgttttgattgaaaaagatGGGAAATTTGAGTTAGTCGAAGAACGA
AACTTAACTATCGATCAACGAGAAGCTCTCGGTTTAACGAAACGAGAAAA
ACGAAAACCGAACACGTTGAACATTCCCGCGTCTAGTGGTCGTGTCCGTA
AATCAAGTAACCCGGAGTACGCACATTTGAAATCGGAGTACGGTATGAGT
GAACAACAGAAGGAGATGAAATTTCGACGTGTTTCCGTCATGCAGATGAG
ACGACAGGAGGAGAAGGAACGAATGAAACAAGAAGACGAAGAGAAGAAGA
GAGCAGCTGATAAGTCGTTCCAGCAATGGCTAGCACAAAAGAAAGAGACC
AAAGCAGACAAGAAGCCTGCTACTCCACATCAAcgtaagaaaaagaagac
agtACCTAGTGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCTTC
AAGACCGCGCGTTCAAACAATGGATAGATGAGAAGGAAGAGCAAACGAAA
GATGAGAAAAAGATGGAGGAAATCAGACTAGCTGAAGAAGCACAAAATTA
TGTTGTCAGAGATCGAAAACAATGTGACAAAGCTTTTAAAGAATggttga
aaaagaagaaagtggAAAGACAATCAACGCCCACTCAAACCACCCGGAAG
AAGTCAACCTACACACCTGCAGGTGTCACGCCAACTGCAACCAAGAAGAA
GTCTTTAGCACCTATATACGCTCCTTCTCTTGAGCAGAGGCGCCCTCGTT
CTTCTGTACGTAGCATGGCGGCGAATGGGATggattgcaaaaatgacgtc
gAAGTAAAGAGGAGAcctaaaacatccaaaataagGATAACAGACAATTT
TGGATATCGACACCCTGCATCAATCGACGACTTCATCGAAAGGAGGAAGT
GATAAGCATCGTTGAGCGATAAATGGTATTAACTTGTTTTTCAATCAAAG
ATTACCGTAACTTTGCTTGACGAACCATTCTCTAGTTGTCACCACCTTTG
CTCCAACGACACAGCAACTGATGTTAGGAACCAAGGTATAATGATGAACA
TTGTAACAGACTTGTAACATTCTGCCTCTCTGATATTGACTAAAATCGAG
ATTTTGCGATTTGGAATGTGGGTTTCAATCAACCATATAAACATGATAAC
TATTGAATCCCTCCATGATGGAATCAGAAAAAAGTCGACGAATCCGGGac
CATTGTGCTTAAACAGCCAGTACTGATTGGACAAGCTGTTCATAATTACT
CTGCGCTACACTTAATTG
Run BLAST on NCBI

transcript from alignment at sc0000331:74280..80047+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019559 ID=TCONS_00019559|Name=TCONS_00019559|organism=Clytia hemisphaerica|type=transcript|length=5768bp|location=Sequence derived from alignment at sc0000331:74280..80047+ (Clytia hemisphaerica)
ATTTCTTTAggtgaaaaataaaaagtatgaACAATGTTTGACGCTTATCA
AAGTGGTGAGGATGGCCACCGGAGAATCAAGTACTGAAGACGaattgtca
cgtgatttctcaACATTGAGTACATCCTCCTCTGTTACAAGTTCCATAAG
TAGAAAAAGTAATGCAAGTACGTTAAAAGATGACCAAGATGGTGAAGATT
TATCTCGTCAAGGAACAACAATGTCGGATGAATCAACGTCATCCCGACCG
ACCTCTGGACTATCGNTATCTCGTCAAGGAACGACAATGTCGGATGAATC
AACGTCATCCCGACCGACCTCTGGACTATCGTCGGTAGCTACTGCTTCCC
GACAAAATACGGTTGGTTCGTTAAGAAGTGAGAATAATTCACGACAATCT
CAACGATCGCTTTCTAGAGGAAGCACTATTCGAAATGATGATCCCGAAGT
GAAGAATAATTCGGTTTCACGAGAATCTTCTGTCTTGTCTTCTCGGAATG
GATATGATGACGATTTTCATGACGACGAAGAATCCAGTCCAACTTCGGCA
TCAAGCCGACAACAGTCGTTTGTCGGGAAATCACCAAGTAATGATAATAG
TGATGATACTGAGAGCGAAAGTGAAGATATGGGGAAAATGGAGAAAGAAA
ACagtgttttgattgaaaaagatGGGAAATTTGAGTTAGTCGAAGAACGA
AACTTAACTATCGATCAACGAGAAGCTCTCGGTTTAACGAAACGAGAAAA
ACGAAAACCGAACACGTTGAACATTCCCGCGTCTAGTGGTCGTGTCCGTA
AATCAAGTAACCCGGAGTACGCACATTTGAAATCGGAGTACGGTATGAGT
GAACAACAGAAGGAGATGAAATTTCGACGTGTTTCCGTCATGCAGATGAG
ACGACAGGAGGAGAAGGAACGAATGAAACAAGAAGACGAAGAGAAGAAGA
GAGCAGCTGATAAGTCGTTCCAGGTACACTATCGTATTGTGTGATGTTTT
GGTCAAGGTTTTATATAAACTGGCTTTTGCGGGTTAACTATAATGACTGA
AAAAATTCTCGTCTGgctaaaaaaatttctcaattgTTGGAAAATAATTA
AGTTGAGGTTAGCATAGTTCGCACGTTCGAAAGTGAACTTTTGGTTTGAT
TACTATTTTTCTCATTGCTCACAGGTTGTCGATCATATACAGCCCGTTCT
TTTTGTTGGTTTATTCGTAAGACAGAGAGTAGTTTTTGGTGTTTGGTCTG
CTCGAGCTAGCAATAAACTAATTTTAAATTCTCCTTTTATTCTTCCAGCA
ATGGCTAGCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTC
CACATCAAcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCGAA
GAAGAAATGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGGAT
AGATGAGAAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAATCA
GACTAGCTGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAATGT
GACAAAGCTTTTAAAGAGTGAggattttgtttatgttgatcTCAGCCTTT
TATTTTNGGCTGATAAATCGTTCAAGGTACACTATCGTATTGTGTGATGT
TTTGGTCAAGGTTTTATATAAACTGGCTTTTGCGGGTTAACTATAATGAC
TGAAAAAATTCTCGTCTAgctaaaaaaatttctcaattgTTGGAAAATAA
TTAAGTTGAGGTTAGCATAGTTCGCACGTTCGAAAGTGAACTTTTGGTTT
CTTTGATTACTATTTTTCTCATTGCTCACATGGGTCACAGGTTGTCGATC
ATATACAGCCCGTTCTTTTTGTTGGTTTATTCGTTAGACAAAAAGTAGTT
TTTGGTGTTTGGTCTGCTCGAGCTAGCAATAAACTAATTTTAAATTCTCC
TTTTATTTTTCCAGCAATGGCTAGCACAAAAGAAAGAGACCAAAGCAGAC
AAGAAGCCTGCTACTCCACATCAAcgtaagaaaaagaagacagtACCTAG
TGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCTTCAAGACCGCG
CGTTCAAACAATGGATAGATGAGAAGGAAGAGCAAACGAAAGATGAGAAA
AAGATGGAGGAAATCAGACTAGCTGAAGAAGCACAAAATTATGTTGTCAG
AGATCGAAAACAATGTGACAAAGCTTTTAAAGAGTGAggattttgtttat
gttgatcTCAgccttttattttttgaaatctttcctGCAAATCTTTCTGG
CTTAATCATATTTAAGATACCAGCTTGTCCAACAGTAAAGAAAATAATAA
GCGACTTTTATGATTTTCCGCCTATCATTATGTTGGAGACAGAAATTGAC
CTTGAAGCACTGCAGAGGTTCACGAGGGAATTTCCTTTCTCTATCAAGCA
AGAAAAGTAAAACCTTATGTTGAcagaataaataatttttttttgattaa
atAGTAATTTACCTTTACTTGTCTTAGATggttgaaaaagaagaaagtgg
AAAGACAATCAACGCCCACTCAAACCACCCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGCTGATAAATCGTTCAAGGTACACTAT
CGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAACTGGCTTTTGCGG
GTTAACTATAATGACTGAAAAAATTCTCGTCTAgctaaaaaaatttctca
attgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTCGCACGTTCGAAA
GTGAACTTTTGGTTTCTTTGATTACTATTTTTCTCATTGCTCACATGGGT
CACAGGTTGTCGATCATATACAGCCCGTTCTTTTTGTTGGTTTATTCGTT
AGACAAAAAGTAGTTTTTGGTGTTTGGTCTGCTCGAGCTAGCAATAAACT
AATTTTAAATTCTCCTTTTATTTTTCCAGCAATGGCTAGCACAAAAGAAA
GAGACCAAAGCAGACAAGAAGCCTGCTACTCCACATCAAcgtaagaaaaa
gaagacagtACCTAGTGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGG
AGCTTCAAGACCGCGCGTTCAAACAATGGATAGATGAGAAGGAAGAGCAA
ACGAAAGATGAGAAAAAGATGGAGGAAATCAGACTAGCTGAAGAAGCACA
AAATTATGTTGTCAGAGATCGAAAACAATGTGACAAAGCTTTTAAAGAGT
GAggattttgtttatgttgatcTCAgccttttattttttgaaatctttcc
tGCAAATCTTTCTGGCTTAATCATATTTAAGATACCAGCTTGTCCAACAG
TAAAGAAAATAATAAGCGACTTTTATGATTTTCCGCCTATCATTATGTTG
GAGACAGAAATTGACCTTGAAGCACTGCAGAGGTTCACGAGGGAATTTCC
TTTCTCTATCAAGCAAGAAAAGTAAAACCTTATGTTGAcagaataaataa
tttttttttgattaaatAGTAATTTACCTTTACTTGTCTTAGATggttga
aaaagaagaaagtggAAAGACAATCAACGCCCACTCAAACCACCCGGAAG
AAGTCAACCTACACACCTGCAGGTGTCACGCCAACTGCAACCAAGAAGAA
GTCTTTAGCACCTATATACGCTCCTTCTCTTGAGCAGAGGCGCCCTCGTT
CTTCTGTACGTAGCATGGCGGCGAATGGGATggattgcaaaaatgacgtc
gAAGTAAAGAGGAGAcctaaaacatccaaaataagGTATTTCTTAATTGC
TGATAGTTTGTCTTTTATTAATGCCTTTTATCATCCCGAACTCAATTTTA
ATCGTTCTAAAGTTCTTTTTTTGTGAACGCTCTCCTCTTTAACTCTTACT
TGGCATTATGTTAGGATAACAGACAATTTTGGATATCGACACCCTGCATC
AATCGACGACTTCATCGAAAGGAGGAAGTGATAAGCATCGTTGAGCGATA
AATGGTATTAACTTGTTTTTCAATCAAAGATTACCGTAACTTTGCTTGAC
GAACCATTCTCTAGTTGTCACCACCTTTGCTCCAACGACACAGCAACTGA
TGTTAGGAACCAAGGTATAATGATGAACATTGTAACAGACTTGTAACATT
CTGCCTCTCTGATATTGACTAAAATCGAGATTTTGCGATTTGGAATGTGG
GTTTCAATCAACCATATAAACATGATAACTATTGAATCCCTCCATGATGG
AATCAGAAAAAAGTCGACGAATCCGGGGTAGGTCTCTATATTTTCAAGGG
AGAGTATCTTTAAAGTTTACCGAAATTCCAAGAATCTCTGAAATTTCGAA
GAAAATAAAAGGGAGAATATCttaaaagtttgttaaaattCCAGGAAGCT
GAAGTTCCTGAATAAATCAAGGCATGACAAGTTAAAAGTTTTATCGATTC
AGCTTTTTCCATCAAAGTTTTACATACAGACTTAATTACCTAACACTTAG
GAATAAACTGTATACTGCTCTTTTTAACATGTTATACAtttattttagtt
cgaatttaTTTTGCTACATTATTTTAGGATAGggactttttttgattttg
atttttttctcgataatCAAACCATTTCTTCTCATCCaaaattgtaaata
aaaaattactaaaaacaAAGAATCTTTATTTATATCTTATATCAAAGATA
ATTAGATTTTCTCAAATGATTTTAATTGTAAATTTTATTCTTTTACTAAA
GATAATATTTTTAATCCATCATGGTTATTTtcctgaaaatcaaaatttca
tgacATTTTTTAAAACCAGTCTCCTTGAAATCTTgagaatttttcacaaa
aatgcacATTtggtctgtttttttttaattctaactGATCAGTTTATAAT
ATCACCAACATTTCAGATTAGTCAGGGATATAAATCCCAACTAAAAGCTC
TTTGGAaacattttgaaggaaaaaacaCTTGCGTCACTTGCGTCTTTACC
AAAAGAATTGTCAAGCTGTTCTATTTCTGATTGCTCTTAACTTCTTAACG
ACTTTAATTAACCTGTGATTAAACTTTCAGACATTTGAGTAATTAAATAG
CCTATTTTAAGGCTGACAAACACCTTAGAAACTCGTTTGTGATTGGTTAG
TAATAGGTCATGAATCAATTTAGTAAGGATTGGGATGAGGGGGACTCTAG
GTAAAAGGATCTATCGGTAAGACAATTCAACCCCTTTAATTCAATTTGCT
TGTTTTAAATAAATATTCGTTaagatatatttttatttagatatatttca
ttcattttagtttaattgcAATAGGTGACTTAAATTCCAAATTGTGGACG
AGTTAATCCAGAAGAAAAATGTCTTCTATAATTGCTGGACTACAATATGT
TGTTATTGTCGTTGGTATTGTATTCTCCAGACATGATGCCAGCTTCTTTA
CGGTTGGCTGCTCCCATTAAAATCGACTTTTGATAGGGTAATAATTCATA
ATGACATATATGTCTAACAATTCTCTTTTTAGGATAAGATTTACTGATAA
ACTAGGATTTCAGTTGTCTTGATTCAAGACCGGTCGTTTGTGGATATAAC
AAGAATCTAAAATTTCGAAAGgtctaaatattttaaatttttatttagac
CATTGTGCTTAAACAGCCAGTACTGATTGGACAAGCTGTTCATAATTACT
CTGCGCTACACTTAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010996XLOC_010996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019559-exon-sc0000331-1491911889:74280..75252TCONS_00019559-exon-sc0000331-1491911889:74280..75252Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1510915933:74280..75252TCONS_00019559-exon-sc0000331-1510915933:74280..75252Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1575043694:74280..75252TCONS_00019559-exon-sc0000331-1575043694:74280..75252Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1491911889:77309..77577TCONS_00019559-exon-sc0000331-1491911889:77309..77577Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1510915933:77309..77577TCONS_00019559-exon-sc0000331-1510915933:77309..77577Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1575043694:77309..77577TCONS_00019559-exon-sc0000331-1575043694:77309..77577Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1491911889:77872..78114TCONS_00019559-exon-sc0000331-1491911889:77872..78114Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1510915933:77872..78114TCONS_00019559-exon-sc0000331-1510915933:77872..78114Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1575043694:77872..78114TCONS_00019559-exon-sc0000331-1575043694:77872..78114Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1491911889:78244..78606TCONS_00019559-exon-sc0000331-1491911889:78244..78606Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1510915933:78244..78606TCONS_00019559-exon-sc0000331-1510915933:78244..78606Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1575043694:78244..78606TCONS_00019559-exon-sc0000331-1575043694:78244..78606Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1491911889:79978..80047TCONS_00019559-exon-sc0000331-1491911889:79978..80047Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1510915933:79978..80047TCONS_00019559-exon-sc0000331-1510915933:79978..80047Clytia hemisphaericaexon
TCONS_00019559-exon-sc0000331-1575043694:79978..80047TCONS_00019559-exon-sc0000331-1575043694:79978..80047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:74280..80047 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.70438	2.06215	1.54006	1.216	43.8194	30.956	33.1327	30.9246	35.8562	42.3246	25.7854	30.9449	15.575	13.6692	6.98152	8.65248	9.18925	9.90946	21.0444	24.3354	11.4257	10.8773	8.25588	10.0057	10.3442	10.7825	31.3863	31.1294	18.1972	17.6828
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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