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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019533 ID=TCONS_00019533|Name=TCONS_00019533|organism=Clytia hemisphaerica|type=transcript|length=3993bpRun BLAST on NCBI protein sequence of TCONS_00019533-protein >TCONS_00019533-protein ID=TCONS_00019533-protein|Name=TCONS_00019533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1090bp MQEIKLYHHAEGHFLKDRLHKQATDAQCGRDSYCTGALVQPPVCEKRAYGRun BLAST on NCBI transcript from alignment at sc0000329:192491..206932- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019533 ID=TCONS_00019533|Name=TCONS_00019533|organism=Clytia hemisphaerica|type=transcript|length=14442bp|location=Sequence derived from alignment at sc0000329:192491..206932- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000329:192491..206932- >TCONS_00019533 ID=TCONS_00019533|Name=TCONS_00019533|organism=Clytia hemisphaerica|type=CDS|length=81825bp|location=Sequence derived from alignment at sc0000329:192491..206932- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019533 vs. Swiss-Prot (Human)
Match: NOS2 (Nitric oxide synthase, inducible OS=Homo sapiens GN=NOS2 PE=1 SV=2) HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0 Identity = 427/1100 (38.82%), Postives = 633/1100 (57.55%), Query Frame = 3
Query: 78 QEIKLYHHAEGHFLKDRLHKQATDAQCGRDSYCTGALVQPPVCEKRAYGELRPVTELKQDAMNFFKEFFKDNSNNLQEDKEALRMCEVMRSIEETGTYELTEQELAFGAKLAWRNAPRCIARKQWNSLKLFDFRHCQSAEEIFQRCLQHIQYATNGGLIRSTISIFKKRTENNKETRIWNSQLIKYAGYTQPDGSVIGDPNSCEFTEVCKTLGWQGKGGAFDVLPIVIQYKXXXXXXXXXXXXXXLRVKISHPKYPKLANLGLEWYAVAIISDMSFDCGGQEFTCAPFNGWYTPHEIGVRNFMDKQRYDMIKPIAEAFDLDTSDNLTLWKDKAAIEMTYAVLYSFKKFRVTISDHHSLSEQFCEFMKSETNSRGGCPADWVWIVPSISGSLLPVFHQEMINYKLKPSYEYQDNPWRHH------RVQKRKFTNLKEISKFVLICIKMAFQYLRKRPQLTVLYGSESGNAKRFARHLENTVNMTFWTKFSSLNKYEFVLDSTKPQFLAIVTSTFGNGEAPSNAELFDIKLKK-MVIKSELNRTQEDINQSKPLQHYKYTVFALGSSAYPQFCAFGNDVNNKMRSLGAEEIYGIGEGDELNGQEQSFLNWLGDCYIESCNRFDIIPTFGTDMADTYNNNLLSSEKKDKFLMDGRRSQWSESKFRIVRADTERKQIKSLCNQISETNRLNVAPSKVIDVENLQTNQSRRKTNFIRLSIQESHKQLQYEIGDSLAIFPENDHTLVERVLKKCRSSFDLDEPIKLEINLNHDKKNDTDSWVSHDRISSPTTLATIFESLLDLNSPPTQSFLSLLCSKATHPNDINTLQNLIQNEMEYKQWRNYNCPTIADVLDKFSSVQISVTFLITQLPLLKPRYYSISSSPRCHPNEIHLTVALLEYKTQGRDGMTRKGVCSSWLDNLKPDDIVPCFVKKSNRMRIPE-TSDPLILVGPGTGIAPFRGFWQELEYKSKHQHNGTKLPEVVLYTGCRSPQEDFLFQEEIQRCHESGVLNKVHSAFSRVHGKAKNYVQHLMKQN-AREMYDLLCKRNGHLFVCGGIEMAKDVKESIVEIIQECSQIDYVDALEATENLKLNGFYHEEVFAHTI*Y 3350
+ +++ + G +D LH +A R C G+++ P + + P EL A+ F +++ E+ A R+ V + IE TGTY+LT EL F K AWRNAPRCI R QW++L++FD R C +A E+F+ +H++Y+TN G IRS I++F +R++ + R+WN+QLI+YAGY PDGS+ GDP + EFT++C LGW+ K G FDV+P+V+Q G +PE FEIP + +L V + HPKY L L+WYA+ +++M + GG EF PFNGWY EIGVR+F D QRY++++ + L+T +LWKD+A +E+ AVL+SF+K VTI DHHS +E F ++M++E SRGGCPADW+W+VP +SGS+ PVFHQEM+NY L P Y YQ W+ H R KR+ LK + K VL + + + R ++T+L+ +E+G ++ A L + F K ++KY + + L +VTSTFGNG+ P N E KLKK + + ELN ++Y VF LGSS YP+FCAF +D++ K+ LGA ++ +GEGDEL+GQE +F +W + +C FD+ + Y +N+ W +R+V + Q L +S + NV ++ +NLQ+ S R T + LS ++ + L Y G+ L + P N LV+ +L++ + ++LE WVS R+ P +L+ LD+ +PPTQ L L AT + L+ L Q EY +W+ N PT +VL++F S+++S FL++QLP+LKPR+YSISSS P EIHLTVA++ Y T+ G GVCS+WL++LKP D VPCFV+ ++ +PE S P IL+GPGTGIAPFR FWQ+ + S QH G + + L GCR P ED ++QEE+ + GVL+ VH+A+SR+ GK K YVQ +++Q A E+ +L K GHL+VCG + MA+DV ++ +++ +++ + LK YHE++F Y
Sbjct: 83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLA-RVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQDEKRRPKRREIPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLEEE-RLLLVVTSTFGNGDCPGNGE----KLKKSLFMLKELN------------NKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVRGKQHIQIPKLYTSNV----------------TWDPHHYRLV----QDSQPLDLSKALSSMHAKNVFTMRLKSRQNLQSPTSSRATILVELSCEDG-QGLNYLPGEHLGVCPGNQPALVQGILERVVDGPTPHQTVRLEA-----LDESGSYWVSDKRL-PPCSLSQALTYFLDITTPPTQLLLQKLAQVATEEPERQRLEALCQPS-EYSKWKFTNSPTFLEVLEEFPSLRVSAGFLLSQLPILKPRFYSISSSRDHTPTEIHLTVAVVTYHTRDGQGPLHHGVCSTWLNSLKPQDPVPCFVRNASGFHLPEDPSHPCILIGPGTGIAPFRSFWQQRLHDS--QHKGVRGGRMTLVFGCRRPDEDHIYQEEMLEMAQKGVLHAVHTAYSRLPGKPKVYVQDILRQQLASEVLRVLHKEPGHLYVCGDVRMARDVAHTLKQLVAAKLKLNEEQVEDYFFQLKSQKRYHEDIFGAVFPY 1134 The following BLAST results are available for this feature:
BLAST of TCONS_00019533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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