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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019517 ID=TCONS_00019517|Name=TCONS_00019517|organism=Clytia hemisphaerica|type=transcript|length=4268bpRun BLAST on NCBI protein sequence of TCONS_00019517-protein >TCONS_00019517-protein ID=TCONS_00019517-protein|Name=TCONS_00019517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp STEEMKFAGFIFCLLVICANSVLMKDDQDFKILDEMENALSSKNSKTVIDRun BLAST on NCBI transcript from alignment at sc0000329:248543..259810+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019517 ID=TCONS_00019517|Name=TCONS_00019517|organism=Clytia hemisphaerica|type=transcript|length=11268bp|location=Sequence derived from alignment at sc0000329:248543..259810+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000329:248543..259810+ >TCONS_00019517 ID=TCONS_00019517|Name=TCONS_00019517|organism=Clytia hemisphaerica|type=CDS|length=16020bp|location=Sequence derived from alignment at sc0000329:248543..259810+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019517 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.982e-27 Identity = 77/228 (33.77%), Postives = 125/228 (54.82%), Query Frame = -1
Query: 2487 KHVFTLEEQIEHKLAFIRQHIDPNKKIILIAHSLGSYITLKMLERLDCEEADRVKQIILLFPVFERTMETQSGRKWVPLTQFLQRPVIRTTK--LVELLPQTVKKSIIDFIAHQRRFSNDSKKSLSNGIDSLVTPNGLRNMSQI-AKDLSKIGRIGDLENVIETFSERLTFYYGASDLWTPLSFYEEMKTRFPDIDIRLDGKGIDHAFVLSHSTLVAPIVREILQEKI 3161
K ++ L QIEHKLAF+R H+ + K++LI HS+GSY TL+ML+R+ V + LLFP ER E+ +GR PL + R V+ T L++ P+T+K +I N+ +++ P L N + + +++ ++ + D E + E +LTFYYG D W P +YE++K FP+ DIRL K I HAF+ + +A ++ + L++ +
Sbjct: 107 KDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRV---PELPVIRAFLLFPTIERMSESPNGRIATPLLCWF-RYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEFSPL------NILEPFCLANAAYLGGQEMMEVVKRDD-ETIKEHLC-KLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDL 322 The following BLAST results are available for this feature:
BLAST of TCONS_00019517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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