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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019466 ID=TCONS_00019466|Name=TCONS_00019466|organism=Clytia hemisphaerica|type=transcript|length=2439bpRun BLAST on NCBI transcript from alignment at sc0000328:181046..198980+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019466 ID=TCONS_00019466|Name=TCONS_00019466|organism=Clytia hemisphaerica|type=transcript|length=17935bp|location=Sequence derived from alignment at sc0000328:181046..198980+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019466 vs. Swiss-Prot (Human)
Match: CPMD8 (C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 OS=Homo sapiens GN=CPAMD8 PE=1 SV=2) HSP 1 Score: 219.164 bits (557), Expect = 1.139e-58 Identity = 201/719 (27.96%), Postives = 317/719 (44.09%), Query Frame = 2
Query: 290 YLAYFPRMFRSGVTENIMISTHGFPKSVSVNIRLTKQDDSDYTSVSKIVQPGQLSTIPLFVGHDASNRLKLHIEGLG-EAIDGDSWLFKNTTDYIYVQKLGLNIMVQTDRPIYKPGQTIKFRVIVVDTDLKPFTGTLNKVQIENPSGSVMRQWREVDLVDSGYASFELKTSEKPVLGKWKITAHVKSYKKVLQVEVKKFVLPKFKVTISPPSFILVADTTVEAEICAKYSYGKSVIGQLTTTICARKDYGYRHWY-QPISLDGKNRKCKTIKKR-IDGCATITIPRDDFYPIKDEKSSSNNQLAISYDAKVKESITGIELEAEKVERKMQSVGYRLSFEKFDSFKPGFPLKTKLFVKDLDGKPADKVLVTLKVGTNYRKGDILDKKAVVTNGVFEIDVPIPPFKHNKIYLHANHERKPLYTGETQWRRRAEDSKSLTAWFSPSHSYLKIEKQFKGAAKIGSFVDVNVHYTSVDAGDIDRTVYYSTMCAGNIVDSGSFTKTFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXEIYRSIFRLNNVPPTWPPVP-STLRKGSFKFSFDITKEMMPHCKMVVYYMR-GEEMVADNTKFDVEDILENDVSIKFTSDEVKPGRSVQLNLKAAPNSKVAVTAVDTSIHFLAKGNDLKQKDLFDIRENLDISAGYVRSRWDRCPNPY---GL----RRKRSIIPYDDTEMVDSEKAFADSGFSILTD 2410
YL P +FR+GV E I ++ P+ V+V +L Q + S I+ G TI L V + L + G G +A +G LF N T + V G ++ +QTD+P+Y+P + + V +L+P L + I +P GS M +WR + G + S++PVLG+W I ++ + EV+K+VLPKF++ I PP +I D + A+Y++GK V G L + Y H +P+ R K + R D C IP D P S + S D + + ++ V+R++ V R S + FKPG K+ + DG PA+ V V +K K +I + V G+ ++P P ++L + G+ + SL +W+SPS YL+++ ++G +V T + T+YY GNIV SG TT S E + L+ P PP P + + +T M+P +++V+Y+R E VAD+ +F VE EN VS+ ++++E +PG V L ++AA S V V AVD S++ L G L +F E+ D+S + SR D P+ GL RR+ S+ P+ DS AF ++G ++TD
Sbjct: 33 YLIAAPSVFRAGVEEVISVTIFNSPREVTVQAQLVAQGEPVVQSQGAILDKG---TIKLKVPTGLRGQALLKVWGRGWQAEEGP--LFHNQTS-VTVDGRGASVFIQTDKPVYRPQHRVLISIFTVSPNLRPVNEKL-EAYILDPRGSRMIEWRHLKPFCCGITNMSFPLSDQPVLGEWFIFVEMQGHAYNKSFEVQKYVLPKFELLIDPPRYIQDLDACETGTVRARYTFGKPVAGALMINMTVNGVGYYSHEVGRPVL-----RTTKILGSRDFDICVRDMIPAD--VPEHFRGRVSIWAMVTSVDGSQQVAFD----DSTPVQRQL--VDIRYSKDTRKQFKPGLAYVGKVELSYPDGSPAEGVTVQIKAELT-PKDNIYTSEVVSQRGLVGFEIPSIPTSAQHVWLET---KVMALNGKPVGAQYLPSYLSLGSWYSPSQCYLQLQPP-SHPLQVGEEAYFSVKSTC----PCNFTLYYEVAARGNIVLSGQ------------------QPAHTTQQRSKRAAPALEKPIRLTHLSETEP--PPAPEAEVDVCVTSLHLAVTPSMVPLGRLLVFYVRENGEGVADSLQFAVETFFENQVSVTYSANETQPGEVVDLRIRAARGSCVCVAAVDKSVYLLRSGFRLTPAQVFQELEDYDVSDSFGVSRED---GPFWWAGLTAQRRRRSSVFPWPWGITKDSGFAFTETGLVVMTD 699 The following BLAST results are available for this feature:
BLAST of TCONS_00019466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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