TCONS_00019426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019426
Unique NameTCONS_00019426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019426 ID=TCONS_00019426|Name=TCONS_00019426|organism=Clytia hemisphaerica|type=transcript|length=529bp
CAATGGCTTTAAGCGCATATTATGATCGATGTTGGCGAATGTATCGAATG
TTTGTGAttgtaatgaaattttttgaagccattCGACTCTTTATTAATAA
AGACTGAAAATGACGACAATTTAGGATATTTTGAGATGCAATGAATTTAA
GCTGCATTAGGATAAGCGATTACATCAATTGCAATAATtccaaaatagaa
atatatatCCACTTATACCACTATTCAACGTTTCCATAATTATCCTTATA
ATATCAACCAAAATGCACACATATATAGATGAATCAATTCACTTGCAATT
CCCTTGCAATGCACttccatattttttcattccataTTTTTCCATATTGT
CTATTTTTTAAACTCTGTGacagtctttttgatttttgagtaggcaaatg
aataacaaaaagaatacaagaaattaataaaacaattaacaaaaacCTAT
TAAAAATGGCAGAAATAttactttgttttgaatataataatttaaaaaaa
tctaataattatgaaaaacagaaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000326:24903..25431

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019426 ID=TCONS_00019426|Name=TCONS_00019426|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at sc0000326:24903..25431 (Clytia hemisphaerica)
ttttttttctgtttttcataattattagatttttttaaattattatattc
aaaacaaagtaaTATTTCTGCCATTTTTAATAGgtttttgttaattgttt
tattaatttcttgtattctttttgttattcatttgcctactcaaaaatca
aaaagactgtCACAGAGTTTAAAAAATAGACAATATGGAAAAAtatggaa
tgaaaaaatatggaaGTGCATTGCAAGGGAATTGCAAGTGAATTGATTCA
TCTATATATGTGTGCATTTTGGTTGATATTATAAGGATAATTATGGAAAC
GTTGAATAGTGGTATAAGTGGatatatatttctattttggaATTATTGCA
ATTGATGTAATCGCTTATCCTAATGCAGCTTAAATTCATTGCATCTCAAA
ATATCCTAAATTGTCGTCATTTTCAGTCTTTATTAATAAAGAGTCGaatg
gcttcaaaaaatttcattacaaTCACAAACATTCGATACATTCGCCAACA
TCGATCATAATATGCGCTTAAAGCCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010913XLOC_010913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019426-exon-sc0000326-1491911889:24903..25431TCONS_00019426-exon-sc0000326-1491911889:24903..25431Clytia hemisphaericaexon
TCONS_00019426-exon-sc0000326-1510915933:24903..25431TCONS_00019426-exon-sc0000326-1510915933:24903..25431Clytia hemisphaericaexon
TCONS_00019426-exon-sc0000326-1575043694:24903..25431TCONS_00019426-exon-sc0000326-1575043694:24903..25431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:24903..25431 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.612937	0	0.145757	0	0.832488	0.125011	0.482168	0.667213	0.62329	1.07263	2.02223	0.819167	0.914893	1.20549	0.365266	0.713267	0	0.297592	0.875764	0.635932	1.85238	1.46811	4.15005	0.552793	0.147512	0.5858	3.12696	1.94771	1.48887	3.77863
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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