TCONS_00019391 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019391
Unique Name	TCONS_00019391
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2108

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000326:309855..317932+

transcript sequence

>TCONS_00019391 ID=TCONS_00019391|Name=TCONS_00019391|organism=Clytia hemisphaerica|type=transcript|length=2108bp
AGCTATGGCCAGGTATTAGCAGATGCCAAGAAAGAACTACGGTTTCTGCT
GGTTTACTTGCACGCTCCCCACCACCAAAGCACTCCTGAATTTTGCAGGA
ATGTACTGAGTAATGAAAATTTCCGTGAATACACTATCAATAGACGTCTT
TTGTTTTGGGGCTGCGATATTTCAACTAACGAAGGGCACAGAGTTTCAAG
GGCAATGAGGGAGACAACTTACCCGTTCTTAGCCGTCGTCTGTTTACGTG
AAGGCCGTATGACCGTCGTTTGGCGAATCGAAGGATGTCTTGATTTGGAT
CGTCTGATAGCAGTTTGTGAGCAAGTGTTCAATGATAATGAAGCAGCTCT
TGTCGCTGCACAGGCAGAAAGGAACGAGAGAAACTTCAGTCGTTCTTTAC
GAGAAGAACAAGATCAAGATTTTCTGAAATCTCTGGAAGAGGACAAGAAG
AAGAGCgctttgaagaaagaaaaagaagacgcCATCAAAGAAGTGGAGAG
agtaaagaaagaaaaggaGGACGAACGGCTAAGAAAATTAGAGGAATTAG
CCAATAGACGTCAAGTATGCCGCACGAAATTCGAATCCCTGGTCGAACCT
TCTCAAGGAGATGAGGGTGTGGTCAAACTAAGGATACGTTTATCGAATGG
TGAAAATATGCAAAGATTCTTCATGAAAAGTGATACATTACAGctATTAT
ACGATTATGTTCTATCTAACGATGCATCACCGAGTGAATTCCAACTGCGC
ACTAGTTTCCCAAGGAATGTTTACCCCTTAGATGAGACGAACTGTGAACG
GACTTTAGAGTCAATAGGAATAAAAACATCAACACAATTCTTAGTGGAAG
ATTTGACTGAAGAAAGCTCTGGTGATGAGGAGGAGGATGACGAATGAAaa
gagaaattattttgatgatggTTAGAAATTTATTTAATTACCTTTTAGAG
GTGGAAATTTTGTTGATGGGAATTTAACTTCGCGGATGGCCGAGAAAGAT
TTTTTCTGAGGGAATTTCATTTGGCAgatggaaagaaaaataattttttc
ggtAATTATTTTGGTGCTCGAAGGATACTTTGGGCCAACAATCATCATTA
AATAAACAAAATCTATTCCTAGGCTCTGAAATAGCATAAATATAGATCCA
CCAAATTTATATTTGGTcacaattttttcctttttaagaTACAAAATTTG
GAAAGCAGCGATGTGTAGCTAgtgggaaaatttttataatcatTCTTCTT
TTGTTAAATGTTAAACCCAGTTaaaaagttaaggttccttttataaagaa
aaaaattaaagaatttgaaagaaaataacaaaatatattAAACTAAGCGC
CGGCTTAAAAAGAACCGATAAGTTTTgtgctcttccagaaaaaaattgaa
tattgcagTGGAGGATAtaccaattttttggaaatttactcccccggaca
acagatctcacccccggacaagcatcagttgaacattcaaaaattcaaat
ttacccctaaacagagcaagtttgcaaccaaaacaaggcaaattttgcag
attttttacTACCCCCCcgaacaaaatatccaatatatcctccaccccct
tgtacaaagattttctggaagagccctttACAAGAATGACTTCAAACTTT
AATCTCTTCGATTTGCGGGTTTATAcgcaattatgaaaaacataGCTAGA
GATGTAGATTTTACaccaaatttgtttttcttattagttttgaaaaatgt
cttaCAGTTATATTGTGTagttattttattttacaaattacTCTTTAAAT
TTTTGACTATAAAAAGTTTAAGCTTGATAGTTGGGTATATCCActgtttt
acaaaaaacaattttcatgcTGTcaatgttaaaggttttgtttttaaata
agagtgatatcgtttgcttactcatcaattttaatttacaagcattttcg
cattggattgacacggatgtggagcaagattggtcagaaagaggaaaaga
aaaacgttttttgcttatatcagcataatataacaataggaagacactgt
cctgatatgaaatatgtgtctgatatgaaacgggaacacttatgtaaaaa
gaaaacct

Run BLAST on NCBI

transcript from alignment at sc0000326:309855..317932+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019391 ID=TCONS_00019391|Name=TCONS_00019391|organism=Clytia hemisphaerica|type=transcript|length=8078bp|location=Sequence derived from alignment at sc0000326:309855..317932+ (Clytia hemisphaerica)
AGCTATGGCCAGGTACCGAACTCACATTCAATCTAGTCCCCGTGTATCCA
AGCCTTTATTTAGGGAGCTATGGCCAGGTACTGAACTCACATTCAATCTC
GTCCCGTGTATCCAAGCCTTTATTTAGGGAGCTATGGCCAGGTACCGAAC
TCACATTCAATCTCGTCCCGTGTATCCAAGGCTTTATTTAGGGAGCTATG
GCCAGGTACCGAACTCACATTCAATCTCGTCCCGTGTATCCAAGGCTTTA
TTTAGGGAGCTATGGCCAGGTACCAAACTCACATTCAatctcgtccccgt
gtatccaaGCCTTTATTTAGGGAGCTATGGCCAGGTACTGAACTCACATT
CAATCTCGTCCCGTGTATCCAAGCCTTTATTTAGGGAGCTATTGCCAGGT
ACCGAACTCACATTCAatctcgtccccgtgtatccaaGGCTTTATTTAGG
GAGCTATGGCCAGGTACCGAACTCACATTCAATCTCGTCCCGTGTATCCA
AACCTTTATTTAGGGAGCTATGGCCAGGTACCAAACTCACATTCAATCTC
GTCCCGTGTATccaaggctttatttacgttattgATTGACACCAGagaat
tatctagcgctatcagggACCAAGGTTGACTCATATGTTATGATTCTGAA
TCATTCGTATAAGGCCAGTGCAGAAAAGTGTCCAGTTAGACAAAGAAGAT
TTGGATCGACACAGTTTAGCTTTTTTATTAAGTATCACCCAATTTATCCA
TTCTTGTGATAATGTagtaatattttgaatattagAGCAGGCATAGAGTG
GGCAGAAAGAAATTCATTGCAGAGGGCAGAGGGCAGTGCtttgaatttaa
aaagtcaactttctacccactttaattcacaatcaGAATAAGCAGGGCTC
CGACTTATATCTTCTACTTCTTCACCAACCTAACTTCTTATGACCATTTC
AATAACTTGAATTTGTCATATTTTATCagtttataaaattttcaattcac
tATTTTCACAACTGATGATTGCAGAAACATGAACCTCAGAGTCTTGTGAC
AAATTGTATCTACATCTTCTACTTTTTCTAGGTATTAGCAGATGCCAAGA
AAGAACTACGGTTTCTGCTGGTTTACTTGCACGCTCCCCACCACCAAAGC
ACTCCTGAATTTTGCAGGTAAGTACGAGAACACCATTTTTATTCACCAAC
TTATCTGTACAAACAACATTGAGAACATGTATGTAACTTAAGATTGAGCC
GTTTGGGCTATTGTAAACCGAAGGAACTCATACGAAAAACACATTTAATT
TGCTTTTTGATTCCCCAAATAGTTTCAAAAAACAACTATGAATACATaaa
cagttgacgctctctaatgtGAGTTTCAACCTACCTACCTAGGTCGGGCG
CCAGTCCTGACCAAAAGTTTCAAAGGTAGCTGGATTTTAATCGAATAAGG
aagtgtatcgaatagtagagcatATTTTATGATAATTTCATGCAGGCGGA
GATtctcaatattatcgaataatataAACATGGAATTTTAAAACTCTACG
TTTTTCAATTTCTATAGGAATGTACTGAGTAATGAAAATTTCCGTGAATA
CACTATCAATAGACGTCTTTTGTTTTGGGGCTGCGATATTTCAACTAACG
AAGGGCACAGAGGTAATtacgttgtttttttaagaacatccaaaattttt
gaagacttcggatgctccaaattttttgagtttttttaagccTACGAATG
TTCtaaacatattcttattttcaccattttttgagtatttctgGCCGTTT
CTCTAAAAAatagtgttttagagtccggaTAGCCTTAAAATTATCTTTAA
CTTGTTcgtaatattttggccatcggaGACTTATTATTCTCAATAGTTTG
TTATTAGTTAAAAAAACTCGAAAGTTTATCTGTGATTTTTAtcaagaaat
agaagaaaaactaactttccctaagaaatcgagtgtttaAGAGTCCAGAA
agccttaatatgttcttaacttgttcttaatattatgGCCATCGAAGATG
TAGTTTTTCTTAGTTAAAAAAATACGTGTATTCGTTCAGGTTTTTGAAGT
GAATAAGAAAACTCGTTTATCTGTGATTTTTtatcaagaaataaagaact
aacttaTACAATTGCTACACCGTGTTTCATGCTGGTGCAATCTTCGGCCA
ATACAGGTGTATTGTAGATTTATAGGGGTTAGGAGATTGTACTAGGTAAC
CCGGCGAAGCCCATAAAGCCCATACACTGCATTGCCTGGAGATTGCGCCA
GCATGAAGCACCGTGTAGCAATTGTTagttacagttgacgctctctaatt
cgatcttcaaggggaattggattttcatcaaagGGAgattatcgaataag
ggagcgtcgtttattaGAGTTTtctgttgacggggactttaaatttcatc
gaataagggagcctatcgaatagtagaacgtcgaattagagagcgtcaac
tgtagttctTGATATTTCGCTCGAATTTTTTTCGAGAATTTTACTTAGAA
AACTGTTCCGAAATATCACACCAACTTTATCACACTGGGAGTAATCTTGG
GGATACTGGATGATGGgatattcaataaaaaaacaCAGATCTGTTAATTA
GGACGGACATTTACCTACTAGAAGAATAATCTTTCTTTACTTCTCTTTTC
AGTTTCAAGGGCAATGAGGGAGACAACTTACCCGTTCTTAGCCGTCGTCT
GTTTACGTGAAGGCCGTATGACCGTCGTTTGGCGAATCGAAGGtaaaaat
gtctttttcttGCAATGTTATAATTTCATCTGTTATGTAgtcttttcaat
tttattttaagagTTTATTTTACAGTATGAGTctccttaaaggttttgtt
tttaaataaaagtgatatcaTTTACttactaatcaattttaattcgccaa
ctttttcacattggattgatacGGATgtagagcaagattggtcagatgaa
aagaaaaaccttttttggcTTGTATCAGCATAATTTAACAATAGGTGgac
actgtcccgatatgaaatatgtgtctgatatgaaacgggaacacttatgt
aaacctttaactcgaaccttaATAACTCGAtcgtctataactcgaacaaa
ttttctcgTCCctaacaataccttataaaccttactccacatcttgaaat
ttccttaactcgaacaaatttggtTTCTCCGTTCGAATTCGAGTTTTAGA
GACTGCACTGTATTGTCAATTTTATTCACAAGTAGGGGTCGATTTTCCTG
GTTCAAATAGAATAAATTTGAAATACTGAGTATAGAGGTTATTCGGTTTG
GTTTCAAAAGTGACGTAACTTGCCATTGTGTGGTGAGAAAACATTCAAAT
TATAATACCCGACTCGAAAGTGAAAAGATTCTTACTTAATTGCGGTTCTT
TTCCAGGATGTCTTGATTTGGATCGTCTGATAGCAGTTTGTGAGCAAGTG
TTCAATGATAATGAAGCAGCTCTTGTCGCTGCACAGGCAGAAAGGTAAAA
gatctatttttttttcgttaaCAAATCTTTTATAAAAGAATAAATACGGT
TCGTAGCGTGGAAGGTCATTACACAAGATAAATTTTCAACCATAATTGGG
GAATGTCTACGTTTAATTGAACCGGATACTATCAAATGCATGGGTCGTGG
CGACTCTAGGTCCCTACTGGTGGTATTCAGTCAAAGTGTGACGTAACGTA
CCCCTTTTTCTGGAATGGACGAAATAcagaatgtcccaaaaaagcggaga
aatttttatataaaataaaatcctcaaaacttctCTGGACACACTGTACC
ATTTTTTGGAATGTCCGAAATACACCGTTCAATGTCTTATCGGCCGATTA
CCGACTGGTATGTAATGGATTTGAAAGAATCTAGGCTATATCGAGTTCGA
CTGTCTGTTTTAAAAATTCTTCTACGAGAAGGGTgaataatataaataaa
aaacataagcTAAAAAGATGTTGAGTGCTTCGTAGGGAAAAAAGGGTCAT
TAGCCTGCCTTTGATAAACCATTTGTTAAAATTGTATGTTTATTTTTGTC
TTCAGAAATGAGAAGGAGTCGATCCTTTACGGGGAAAGCAAGATCAATGA
AATGAAGCCTTTCCCCTTAGTCACATGAGTTAAGAAAGGGACTTTGGGTC
ATTAGCCTGCCTTTGTTAAACCATTTGTTAAAATGTGTACGTTAATTTTC
CCCTTCAGGAACGAGAGAAACTTCAGTCGTTCTTTACGAGAAGAACAAGA
TCAAGATTTTCTGAAATCTCTGGAAGAGGACAAGAAGAAGAGCgctttga
agaaagaaaaagaagacgcCATCAAAGAAGTGGAGAGagtaaagaaagaa
aaggaGGACGAACGGCTAAGAAAATTAGAGGTAAAATAAATTAGAGTCTA
CAGTACTTCTGGCTaaaccattgatttcaaagccccgaaggggctagatc
cGAAGCTCCAAGATGGGAAATGAAGTCACATATTTTCCATCCAGAACACG
TGACCCGtgtgttttttcaaacaaaatttctaaatacgGGCCAAAACTTA
AGACttccactttttcttgcttgagaaaggttaaagattcgcaCCTATCC
CCTTCGGGGCGTCAAACTCAATAGGCTAAACTTTGCTATTTGATGACGCT
GAATAAGAGCATTTGACGAGGGCGCTATTTTGGAGAAAGAAcacgaaaat
tctaaataataataaaaatgcttggatttaaTAAGAGACTAacactaaaa
acagatttggaaCATACATTGCCATTTCCATTTTTTACCTTCCAACTAGA
ATCTGGCAGACTGTTTTACAGCCTCTCTTAAGCCAAAGCTTCAAATGGAG
AACTACCTTAGGCAACCGGGCTACTTAATTTCGcaatccagtctatcaaa
aagccttAAGTAGACGTAGACCCCGGGCTAGGGGTCAGATTTCCCTCCTT
ACAATCTCTACCAATCTCTATAATGGTCAtatcttttctcttttctttgt
GTTTCATTAGCAGATATTTCTAATTAAATCTGTATGGTAATAtgtatttt
cttcttctttttttcaatcagGAATTAGCCAATAGACGTCAAGTATGCCG
CACGAAATTCGAATCCCTGGTCGAACCTTCTCAAGGAGATGAGGGTGTGG
TCAAACTAAGGATACGTTTATCGAATGGTGAAAATATGCAAAGATTCTTC
ATGAAAAGTGATACATTACAGGTAGGTTTTTTGTTTGTATGTTCCATTCT
TTTTCATAACATGTGTCttcaatgtcttctgacattacatcacggaccca
acagctgatttgttgtaagtgacgtaaaaagagtcaatacgtcactttca
accaatcagctgttgggtccgtggcagacattgcaatggtgcatatcatt
gATATGTagtttccgccattatggaagcgaGGGTTTGATTTCCATAACGG
CGGAAAATAAGTAACTAAACAAACAGGCCACTACAGTGGATTCTCCATAA
CTCGATCGCGCACtggaaaacaaatttgtggTGACCTCTGAACTGTCATA
GATGGATCTAGGGTTTATCTTTCACATGGATATTttagtaatctaggact
tttgcagatgaaattgagtttttataattgttcatttgaagtaataacat
tgacgcgttctttagaaaaataacaaaattgattttttactggttaacga
ccaaccaaatcaaattagagcttttgattgttttcatggTCGCAGCCAGC
CgcctcggctatctatgaacagACGAAATGATGGGAAGAGCAGGAACTTG
AACCGGGAACCTTAGCCTGGTTACAGGAACCTCTTGTACGACCATTCACC
TTATCttgtgtttttgtttattttttagctATTATACGATTATGTTCTAT
CTAACGATGCATCACCGAGTGAATTCCAACTGCGCACTAGTTTCCCAAGG
AATGTATACCCCTTAGATGAGACGAACTGTGAACGGACTTTAGAGTCAAT
AGGAATAAAAACATCAACACAATTCTTAGTGGAAGATTTGACTGAAGAAA
GCTCTGGTGATGAGGAGGAGGATGACGAATGAAaagagaaattattttga
tgatggTTAGAAATTTATTTAATTACCTTTTAGAGGTGGAAATTTTGTTG
ATGGGAATTTAACTTCGCGGATGGCCGAGAAAGATTTTTTCTGAGGGAAT
TTCATTTGGCAgatggaaagaaaaataattttttcggtAATTATTTTGGT
GCTCGAAGGATACTTTGGGCCAACAATCATCATTAAATAAACAAAATCTA
TTCCTAGGCTCTGAAATAGCATAAATATAGATCCACCAAATTTATATTTG
GTcacaattttttcctttttaagaTACAAAATTTGGAAAGCAGCGATGTG
TAGCTAGTGGGAAAGTTTTTATAATCATTCTTCTTTTGTTAAATGTTAAA
CCCAGTTaaaaagttaaggttccttttataaagaaaaaaattaaagaatt
tgaaagaaaataacaaaatatattAAACTAAGCGCCGGCTTAAAAAGAAC
CGATAAGTTTTGTGCTCTTCCAGNGACCATTCACCTTATCttgtgttttt
gtttattttttagctATTATACGATTATGTTCTATCTAACGATGCATCAC
CGAGTGAATTCCAACTGCGCACTAGTTTCCCAAGGAATGTTTACCCCTTA
GATGAGACGAACTGTGAACGGACTTTAGAGTCAATAGGAATAAAAACATC
AACACAATTCTTAGTGGAAGATTTGACTGAAGAAAGCTCTGGTGATGAGG
AGGAGGATGACGAATGAAaagagaaattattttgatgatggTTAGAAATT
TATTTAATTACCTTTTAGAGGTGGAAATTTTGTTGATGGGAATTTAACTT
CGCGGATGGCCGAGAAAGATTTTTTCTGAGGGAATTTCATTTGGCAgatg
gaaagaaaaataattttttcggtAATTATTTTGGTGCTCGAAGGATACTT
TGGGCCAACAATCATCATTAAATAAACAAAATCTATTCCTAGGCTCTGAA
ATAGCATAAATATAGATCCACCAAATTTATATTTGGTcacaattttttcc
tttttaagaTACAAAATTTGGAAAGCAGCGATGTGTAGCTAgtgggaaaa
tttttataatcatTCTTCTTTTGTTAAATGTTAAACCCAGTTaaaaagtt
aaggttccttttataaagaaaaaaattaaagaatttgaaagaaaataaca
aaatatattAAACTAAGCGCCGGCTTAAAAAGAACCGATAAGTTTTgtgc
tcttccagaaaaaaattgaatattgcagTGGAGGATAtaccaattttttg
gaaatttactcccccggacaacagatctcacccccggacaagcatcagtt
gaacattcaaaaattcaaatttacccctaaacagagcaagtttgcaacca
aaacaaggcaaattttgcagattttttacTACCCCCCcgaacaaaatatc
caatatatcctccacccccttgtacaaagattttctggaagagccctttA
CAAGAATGACTTCAAACTTTAATCTCTTCGATTTGCGGGTTTATAcgcaa
ttatgaaaaacataGCTAGAGATGTAGATTTTACaccaaatttgtttttc
ttattagttttgaaaaatgtcttaCAGTTATATTGTGTagttattttatt
ttacaaattacTCTTTAAATTTTTGACTATAAAAAGTTTAAGCTTGATAG
TTGGGTATATCCActgttttacaaaaaacaattttcatgcTGTcaatgtt
aaaggttttgtttttaaataagagtgatatcgtttgcttactcatcaatt
ttaatttacaagcattttcgcattggattgacacggatgtggagcaagat
tggtcagaaagaggaaaagaaaaacgttttttgcttatatcagcataata
taacaataggaagacactgtcctgatatgaaatatgtgtctgatatgaaa
cgggaacacttatgtaaaaagaaaacct

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010896	XLOC_010896	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000326	supercontig	sc0000326:309855..317932 +

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00019391 vs. Swiss-Prot (Human)
Match: FAF2 (FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.679e-40
Identity = 112/290 (38.62%), Postives = 164/290 (56.55%), Query Frame = 1

Query:    1 SYGQVLADAKKELRFLLVYLHAPHHQSTPEFCRNVLSNENFREYTINRRLLFWGCDISTNEGHRVSRAMRETTYPFLAVVCLREGRMTVVWRIEGCLDLDRLIAVCEQVFNDNEAALVAAQAERNERNFSRSLREEQDQDFLXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXANRRQVCRTKFESLVE-----PSQGDEGVVKLRIRLSNGENMQRFFMKSDTLQLLYDYVLSNDASPSEFQLRTSFPRNVYPL---DETNCERTLESIGIKTSTQFLV 846
            +Y Q L DAK+ELRFLLVYLH   HQ + EFCRN L         IN R+LFW C  +  EG+RVS+A+RE TYPFLA++ L++ RMTVV R+EG +  D LI     + + N+  LV+ + ER ERN ++ LR++QD+ +L SL  D++K   K       +E    K+ KE+E  ++      RRQ  + + E  +E     PS  D   VK+  +L N   ++R F  S +L +++D++ S   SP +FQ+  +FPR V P    +E     TL+  G+  +    V
Sbjct:  158 TYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVIS-LINTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQEKERKK-------REERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEWPNPPTLQEAGLSHTEVLFV 439

The following BLAST results are available for this feature:

BLAST of TCONS_00019391 vs. Swiss-Prot (Human)

BLAST of TCONS_00019391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FAF2	3.679e-40	38.62	FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE...	[more]

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TCONS_00019391 (transcript) - C. hemisphaerica