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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019388 ID=TCONS_00019388|Name=TCONS_00019388|organism=Clytia hemisphaerica|type=transcript|length=2721bpRun BLAST on NCBI protein sequence of TCONS_00019388-protein >TCONS_00019388-protein ID=TCONS_00019388-protein|Name=TCONS_00019388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MAEANTSNHDDISSENQQKLTELQQIVGKDVEECKSLLLKHSWNMEAAVHRun BLAST on NCBI transcript from alignment at sc0000326:301366..317932+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019388 ID=TCONS_00019388|Name=TCONS_00019388|organism=Clytia hemisphaerica|type=transcript|length=16567bp|location=Sequence derived from alignment at sc0000326:301366..317932+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000326:301366..317932+ >TCONS_00019388 ID=TCONS_00019388|Name=TCONS_00019388|organism=Clytia hemisphaerica|type=CDS|length=20202bp|location=Sequence derived from alignment at sc0000326:301366..317932+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019388 vs. Swiss-Prot (Human)
Match: FAF2 (FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 1.996e-67 Identity = 156/446 (34.98%), Postives = 236/446 (52.91%), Query Frame = 2
Query: 98 DISSENQQKLTELQQIVG-KDVEECKSLLLKHSWNMEAAVHSVFSEQEGIASVWDNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHVGRTVQMNNARQSWATWLLNAP---------YNILHFGLSFAYYSASQFVLFIVRIVWPTFGRTPTDPVEDVTKFKENFEEEYGSTHPTFYLGSYGQVLADAKKELRFLLVYLHAPHHQSTPEFCRNVLSNENFREYTINRRLLFWGCDISTNEGHRVSRAMRETTYPFLAVVCLREGRMTVVWRIEGCLDLDRLIAVCEQVFNDNEAALVAAQAERNERNFSRSLREEQDQDFLXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXANRRQVCRTKFESLVE-----PSQGDEGVVKLRIRLSNGENMQRFFMKSDTLQLLYDYVLSNDASPSEFQLRTSFPRNVYP 1390
D++ E +KL + Q + G + +++C+ L +H+WN+EAAV +EQEG+ SV++ R +Q+N A +++++ P Y ++ F YY+ F +R + P TDPV D+ F +FEE+YG HP FY G+Y Q L DAK+ELRFLLVYLH HQ + EFCRN L IN R+LFW C + EG+RVS+A+RE TYPFLA++ L++ RMTVV R+EG + D LI + + N+ LV+ + ER ERN ++ LR++QD+ +L SL D++K K +E K+ KE+E ++ RRQ + + E +E PS D VK+ +L N ++R F S +L +++D++ S SP +FQ+ +FPR V P
Sbjct: 8 DLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSVFNPPP--------------------------------SRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRFIRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISL-INTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQEKERKK-------REERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLP 413 The following BLAST results are available for this feature:
BLAST of TCONS_00019388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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