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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019376 ID=TCONS_00019376|Name=TCONS_00019376|organism=Clytia hemisphaerica|type=transcript|length=1012bp
tttctctcatgaaaaatctttcttcCTTCATTTAAAATCGTGAACTGTAG
AATATTTGAAATACTAACTCTGATATAcagaatttaaaaagtttttaatt
aaaGAATTATAATGGTATCTAATCTGGTCTTACTATCTTTTGTCCTTACC
CTCATGCATGATTGTCATAGTTTACCGGTACAACATCAGAAAGATCTATA
CAAAGGTGAAGCGATCTCCAAAAGATAATGCGTTGGGGAAATGGAAATTT
TGCAGTTGGAAAGAAAGAAGTTCCCAGAAACGgaaaagaaatttccaaaa
gacaAGACATAATTCGTTGGGGAACCGGAAATTTTGCAGTTGGAAAGAAA
GAAGTTCCCGCAAACGgaaaagaaatttccaaaaggcAGGACATAATTCG
TTGGGGAACCGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCAAAAAGC
AGTAGACaaacttattttaaattttcaattttaagaaCAAAGGCTGATAG
AGTCAAATGTTTGAATTGAATCTCACATCCACAGGAAATTGCCTTTAATG
GGGAGCGGTTGTAGGGGTTCCTGTCAAGAATTTTGCTAAATCCCGGAAtt
ctgaaaatcgaaaaaaatcaaaaaataataacaccatCACACCGGTATGT
AaaggctaaataccgtcaccgtctgattctTTCAGTCCTTTGACTGCAGC
TCCCCAAATATATAGGTCAGCATTCTTTGCAATTCCTAGTtatcccagct
ggtacacaacgttgttttaacgtttgtctaacgtccacaacgtccattta
acgttagacgaatgttgaaacaacgttgtgtaccagctgggattTGAGAT
TTAAAATTTCGAAGGTCTTTAAATTATTTAATTTGCAAGATTATAGATTG
TGAGCGTAAATTTGCTAAATATAATTTAAAATCAAAGTTTGTTCTCCAAT
AAATTGTTCACTTCACTCATGTGAAATTTGTTAATATGCAGGCCCagtgg
aacaaccgtaaa Run BLAST on NCBI transcript from alignment at sc0000326:161950..169592+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019376 ID=TCONS_00019376|Name=TCONS_00019376|organism=Clytia hemisphaerica|type=transcript|length=7643bp|location=Sequence derived from alignment at sc0000326:161950..169592+ (Clytia hemisphaerica)
tttctctcatgaaaaatctttcttcCTTCATTTAAAATCGTGAACTGTAG
AATATTTGAAATACTAACTCTGATATAcagaatttaaaaagtttttaatt
aaaGAATTATAATGGTATCTAATCTGGTCTTACTATCTTTTGTCCTTACC
CTCATGCATGATTGTCATAGTTTACCGGTACAACATCAGAAAGGTAGGCT
CATTTTGCTTTCTACCTCATTTATACATTTTATTAACCATTTGCTTCAGC
TTGCACTAAAGATTGTTTTGCTTGTCCTTGTTaaatccccttctcacaga
cccggcaggattttttcaaccagtagggataaaaataacggactcaCTGA
agctcgatggggattgatattcccttATTTTTCAGAGGgtattgatttct
tttgttttcaattcagtggggatgggaaatgTAGTGCAATATCTTACCAG
GGATgatattttttgccaatttttccagtggtgaGAAGGGGTGTCTTGTT
CAGTCAATGCTTCAATGCTTCATTTCTAACAAATTACTCAttccgttgaa
aagataattcagaggaccatattttttgcaaaaaaatattctaataattt
tagaaaatgaagatgaaaagggaagaaaaaaatgaactttttcttccttt
tagtGCTAGACACTCCGTTTTTTTGTACAGAGATTCTTTAAAGCCTCGTG
ATTTCAGCTACCAGTGAATACCCCTTAAAATCACACCCCTTAATACCTGC
AAAGTTGGGTTTTGGGCTCTCTTAaccaccaaatttaatttaatattgta
taattcacttttttaagtCTCTAATATggtactttcataaaataccttat
ttcaagaattttaattatcGTAAAGTGTTGTAAAAttcgaaattattaaa
aattatcaaaaatcccttcaaaaaatcattttttttggacctagagatta
cacaaatgaatttaaggtcataaaacctatactttttaggtacctatact
tatggtaggtacAAAAAAATCGTTTTCTTCTCCATGGTTACACCCCAAAG
AAATCGTAACGCCctcaaagttttattttaaagctcatttatgATAGTGG
CCTATTAAATCTGAAGATCGCATATCGCATAATCGCATGatattgcatac
caaaatgtcacaaatttaaaatacattaaaaatgaagcgaataaaagttt
tgacccttcaaaaccgttttttgacaaataaaCAGGCGCAATTGCAttat
gaaatcctgaaaaatacaaatatagttttggaaatggatttctagcaagt
atttgatcaattgaatcacggTTCAGCACCTGAGTTGCAATTTTACAGTT
TCAGTTGTGAGCAAGGGGTCAATGTTTGTAAGTTTTAAGGTGCATTAGTG
TAGAttttaaggtgtaatttgattttaacgtacagttttgaaaCTTAATT
GTAGCCTTAGTAACTTTACAGTGAATCActattcaaaatttgagaccaaa
aggactattttataaaaagttattcaaaaaaaccATTtggtaggttttaa
ggggtaaatcgctaaaattgcattttttcaccgatcaataaaaattttct
tagcaaCTTTTACAAAATAACATACCCAGGGAAGAAATTCATAGGTAGCC
TAGACTCGCTAGAAAAGGTTTCAGCCCTTACTGTTTTCTCTATCAGGATA
TAGGGATAGAGATttttttgttgtaggttttaaaGGTATCTTCCCTTTAA
GATAGGTTACAGCCTCTAAGAGGTAGCTcgttgaaaaaacatttttttac
tcCATTGGGAAACCTTCTAAGCAATAATTTAATGTAAAAAATTAAATCAG
AAGGCTTCAAAgtacctttgtaccaaaaaagGAGTTTCTGGCACTAAAGT
ATGCtcgaaaagataaaaatttcatatttttcttcttcaattttcatctt
catttttttttaatttttggaaagtttttctcaaaaattatagtgtgtgt
gtgtgtgtgtggtaTATTGTAGGGTGTAAGGTTAGCCAGGCCAATTTCTT
TCCACTTGGTTTGGTAATCCTCGTCTGAGTGGATCTGACCGGTttactga
tacaggggtgtgtcTGTACTttactgatacaggggtgtgtcTGTACTGTG
AAAGTCGAATATGGATTTTACAccactgtgtcacagacccaccaGGGCCC
CagtcagccccactggaaaatttgccaaaaaatttcGTCCCTACTAGGAA
ATCGagtttgatttcatccccattcgaaattcaatgattgaaaattgcac
ttcaaaaccattcccactggatCTTTTAATCTTTGAgtaatagaattttt
atccctattGAGATTCAAAAGAATTGATCACTGCTGttagaaaaagtttc
accggggctgtgaggcaggggtgtagtTACGTATATGTGTGAGTTTTTGG
CACGAATCTTTCCTATTTCGAAAAGTCCtactttgaagatttttctcATT
TCGTCCCATAGGCTTTgtgtaagtttgaaaaaaaaatcaaaagagaaTCT
ATAATTAAGATTAAGAATACGAAAAGTATCaccttttttgtttatttaac
tAGCTAATATACATATAAGTTACACCTCCTTCTTCTGCTTAGCAAAAAAT
TGGCTAGATATATTCATAAAcacatttttatataagaacatacaaaattt
ttgaagccttcggatgttcctagctttttatgttttaaagcctgaaatgt
gttttacccatttttctaagaaatttggCGTTTTCGAGTCAATAAAGCCT
TGAAATAATgtaaacttgttcttagcattttggccgtTGATGTCTTATGA
TCTTATatatccccgggggggggggggggNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggcag
ctgagcaaaatgaccgacgggtatgtgcaggccctaagggtaccttttca
aagatgttttaaatgcactgtaagggtcggaaaaactagagatgcactgt
aagggtagaaatttcagaaaattctgaaaatctaGATATTTGGCCCAAAA
ATGGAAGAATTTTGACAGTTCTTTGCACGAAAAGGGTTGAACATTTGGGG
AAAAATGCAATTTAAGGTTATAATTTTCACCGACTTTTGcagcactgtaa
gggtgcaattttaaaagcccattcttggcccgcacataccgtcagtctgC
AAGCCCAGTCCCTCCCCCGGGTATATAGccttttcctataaaaaatgtgt
aagacAAGGATTTGATGAAGCACGAGTTTGTATATTCAATTTTAGAGGCT
TGTCGATTTCTCAGAACATGTGATTACTTCAAAAGTGcatcaaaatgcta
aaaaaatactgaaaaaacgGAAATACACCATTTATAAGGGCCTTTAAAAC
TTGAAACATACAAGCTTTTGAACACCCAAAAACCCAAAAGCctcaaaggt
ttttaaaaatcttataataaaaaaagattggaaTGAAAATCTACAATGTT
ACTAATCATATCTTAACTGTGACCAATTGATGGGGCAAATAGCAAGTAAA
CATGAAACCCCAAGCTTTTGGAGGTGTGAAAAAAGCTCATAATTAACATT
ACAAAATATGTtactttttgaaatctacacgtttttataagaacataaga
tgGGCAAAATGTTATAAACttgttaagaacattgtaaggctTCGCGAACT
TTAAAATACCCAGTTTTTGAGGAAAATAGACAAGGATACTCAAATAATGG
CGacaataagaacaatttaaggactaagaacattcgaaggcttcaaatat
tttagatgttattttttaaaaacttgtATGGCTAAGTTTACATTAAGATT
GTTTTCCAAAACAGTAGTGATTTGCTTTCACAGCGTGAATTAAGATCTTT
GATAATTGTAAACGGTACTATATAAGACCACTGTCACAAGACCCGGTGGG
CCCcaccccactgaaaaatttcgACATTTCAACATCTTgggaaaatagcc
aaaatttcAACACCACTTGGAAATTAACTTCGATTTCGTTTCGATTTGGA
ATCCAatgtaaaaaaataacaaacaaacaaagtaaCAAATTTAGTTTCTC
CTGATCAAGGAAAACCCATTTTGCGGATACCAGGAGAACTAATACAATTG
TATATTGTatacttgtaaaaaaaaaattgtcagtcAAATTTTTCACATGG
CGGAAAAAAGACccatatataatattttcataaaaaacatcCACATTTTT
TAAGACTTCAAGAAAATGCAGGTTTTTTAGAGTCTGAAAAGTATtcagaa
aatcttattttcaaattaaaaaatcgtTCATATTCTAGACAGGTTATACT
GTTTGAGAATTCGACACCAATATAACAGGATATATGAAAGGTGTTTAGAA
TAATTATGCGAAAAGTTATGATATAATTTCATACTTTTTTGAGAAGTtga
ttaattttcgattttgcCTGATCAAATTTACAGAAAGCAATCAAAAAAGA
ATTATGGAAATAAGTCCTAATGTAGTTACTTTTGATGTAATCATCTGAAT
GTCGAAAAATCTTCTATGGGCGTATTTTCCCGTGAGTATCACAGTATATG
AATAGTACATGCCAAGCTGCATTTAACACGCACTTAGAAATTTCTTTCGA
TTCCTTGGATAATAATTTGATTGAGACATGCGCAATAAAATTCTTACATT
ATGTCTCTGCAGCTTAATTTTAGAGAAAGCTAAGCTATGATGTTTACGAC
CAGGCGTATTCAGCTTTTTGGTCTTTaagtttaaaggttttcttaaaata
tttttgtcgtCAGCAATTTAAGAAGCCATTTGATTtaagtttctgaaaaa
ttgtATGTTCTAGAACCCAGACAAAGCTCTTATGTtcaaagtttgttctt
aaataTCTAGCTGTGACTGAAAacgtttttaaacaaaaaatgtcattcaa
ttataaattgacaCACATTGGGTAATGTTACcgttagggtaccactttca
taAAATATCCGATCGATAGTAGTGGATATAGCTTGATTTAGGGTTTATAA
AGTTCAATGGTGCAGGTCCCAATGAGTCACGGGTAACAAAGGAATTTATG
AAGGGACGGAAGAATGATTAGTAGACTCCCTTTGTTTAACACCTGCTTAC
AGACTCGTATATACAAAAGtgataaattattttaagaCTTTATGAAATTA
GAATAAGTTTCATTTTCAATGGCAAATTAGTGAGTTTAGTATTACTATGT
TAAGAACCAATAAACTGAAGCAATTCTTATTCAAAATgttatgaaatttt
caccagcGTGCTAAATTTTGAGACCTTGTTAGACAGTATAAAAGTTTTGG
AGTCAATGAGAAcctaaatatttttactttagtggAAGAGAAAACAACTG
CAAATCCATTGAACTTAAAATTGAACTAATTGTGGTAATCGCACGCATTC
TGCTGAAAATAGTTTCATTTATTGAGTTGATCGAGTAGTTATTAAGTTCA
ATAGAAAACATGGCTAAATTGACTGGGTTAACTTGTTTGGTTGTTATTGc
tgcatttgttttgaaatgcaGTACTTCTCCTGTTCCCAAAGGTACGATAT
TTAAAGTATTGGGGTAGAATTAACTTGGGCTAAAATTGTTCAAGAGGAGT
TGGGCTAGTGTTGAAAGATTCACCACAGCCTAGTTACAAACAGATCTCAA
TAAACATGTTGCTCCAAATAGAACCCCGGTTTGTAGGAATTATCTCTTAA
TAGTGAAGAACTAGGTGCTCGGCAACCCAAAATTGGATAGAAAATTTATC
tcttttttttcggaaatacCCTCGGTTGAtggggaaaaaaagaaaatgaa
gagatcaatcaacattaaaaataatctCATAAACATTATAAAGAATTAAT
ATAAAAGAATTATAGAGAACATCATTTTTGGTGCACCTATATTTTCGGGT
CCAGATAGTGTAAAAGTAACCAGATAAGCTACCccaattatgaaaatttt
tatttgacaaCTCCAATATTCTTTAACTTCCAATCTCAAATTCTCTTAAA
TCTTGCGAGCACTAATTTATTACTAAGTTATTCAGCATATGCAACCTTGC
AAGGTCATCTCGAATTGCGTCCAGCGTGGTGGATTGACCAAAATTCGGAC
AAACTGGGAAAGGAATTTTTAGATTTGATTCCAGCCTCCCCTTTTAAAGA
AAGTAAATACATTTGTAAAATTTAGACGGGCGAAGGGAGCATAAAAGCTT
TTGGgaattctctctttttggccgaAATCTGCCAATTCCTCTAGTAATCA
GAGGCCTCATTTCTCTTTTACATTTGAACAAGTGCAGAAGCACGAAACTT
TACGTTATGTACTGAATTATCGAAAGacaacttttaaattttacttgGCT
CTGGAACGAGTTGAAAAAAGAAACAACAGAAACTTGAAAATCAGAAATAG
ACACTTACATAATTTTGTTGAGTTTTTGCAGTGTGACTATTGTCAACTAA
CAGTAACTCAGCCAAATTCTTATTATattagttttttacttttttccagA
TCTATACAAAGGTGAAGCGATCTCCAAAAGGCAAAACATAATGCGTTGGG
GAGATGGAAATTTTGCAGTTGGAAAGAAGGAAGTTCCCGCAAACGgaaaa
gaaatttccaaaaggcAGAACATAATGCGTTGGGGAAACGGAAATTTTGC
AGTTGGAAAGAAAGAAGTTCCCGCAAACGgaaaagaaatttccaaaaggc
AGAACATAATGCGTTGGGGAAATGGAAATTTTGCAGTTGGAAAGAAAGAA
GTTCCCAGAAACGgaaaagaaatttccaaaagacaAGACATAATTCGTTG
GGGAACCGGAAATTTTGCAGTTGGAAAGAAAGAAGTTCCCGCAAACGgaa
aagaaatttccaaaaggcAGGACATAATTCGTTGGGGAACCGGAAATTTT
GCAGTTGGAAAGAAAGAAGTTCCCAAAAAGCAGTAGACaaacttatttta
aattttcaattttaagaaCAAAGGCTGATAGAGTCAAATGTTTGAATTGA
ATCTCACATCCACAGGAAATTGCCTTTAATGGGGAGCGGTTGTAGGGGTT
CCTGTCAAGAATTTTGCTAAATCCCGGAAttctgaaaatcgaaaaaaatc
aaaaaataataacaccatCACACCGGTATGTAaaggctaaataccgtcac
cgtctgattctTTCAGTCCTTTGACTGCAGCTCCCCAAATATATAGGTCA
GCATTCTTTGCAATTCCTAGTtatcccagctggtacacaacgttgtttta
acgtttgtctaacgtccacaacgtccatttaacgttagacgaatgttgaa
acaacgttgtgtaccagctgggattTGAGATTTAAAATTTCGAAGGTCTT
TAAATTATTTAATTTGCAAGATTATAGATTGTGAGCGTAAATTTGCTAAA
TATAATTTAAAATCAAAGTTTGTTCTCCAATAAATTGTTCACTTCACTCA
TGTGAAATTTGTTAATATGCAGGCCCagtggaacaaccgtaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019376-exon-sc0000326-1491911889:161950..162142 | TCONS_00019376-exon-sc0000326-1491911889:161950..162142 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1510915933:161950..162142 | TCONS_00019376-exon-sc0000326-1510915933:161950..162142 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1575043694:161950..162142 | TCONS_00019376-exon-sc0000326-1575043694:161950..162142 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1491911889:168599..168629 | TCONS_00019376-exon-sc0000326-1491911889:168599..168629 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1510915933:168599..168629 | TCONS_00019376-exon-sc0000326-1510915933:168599..168629 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1575043694:168599..168629 | TCONS_00019376-exon-sc0000326-1575043694:168599..168629 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1491911889:168805..169592 | TCONS_00019376-exon-sc0000326-1491911889:168805..169592 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1510915933:168805..169592 | TCONS_00019376-exon-sc0000326-1510915933:168805..169592 | Clytia hemisphaerica | exon |
| TCONS_00019376-exon-sc0000326-1575043694:168805..169592 | TCONS_00019376-exon-sc0000326-1575043694:168805..169592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:161950..169592 + |
Blast
The following BLAST results are available for this feature:
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