TCONS_00019357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019357
Unique NameTCONS_00019357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019357 ID=TCONS_00019357|Name=TCONS_00019357|organism=Clytia hemisphaerica|type=transcript|length=408bp
NNTAGATAAATTAAAGAAGTCGAACTTTTCCGTGGTAGTAGGAGGCGAAG
GAAGTTTGAGTAAATGCTGCGAGAATCAAAACAATGTGCTTTCCACATGT
TGTCACATGGTAGCGAAGCTAAAGGTTTATTTTACTACGGTGATACAGCC
TTTTCCTTTGTCTTCAGAgttaatatttttatctaaGTAATAAAAAGACT
CTATAAACTTTCTCACTCAACCAACCCGTATGACTAATCGAGACAACGCC
GCCTTCCTCTGCATCTTTGCCTACCATTTTTAACTTTGTCAAATCAGCAG
CCCAATCAAATTCTCATCTCGAAAGACTGAAAGAAGGGAAGGAAAGGATA
AAGTTAAAGGAGGACACTAACTAAAAGAAGAAATCAGgagcagaaaaaaa
aaacaagt
Run BLAST on NCBI

transcript from alignment at sc0000325:193904..194311

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019357 ID=TCONS_00019357|Name=TCONS_00019357|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0000325:193904..194311 (Clytia hemisphaerica)
acttgttttttttttctgctcCTGATTTCTTCTTTTAGTTAGTGTCCTCC
TTTAACTTTATCCTTTCCTTCCCTTCTTTCAGTCTTTCGAGATGAGAATT
TGATTGGGCTGCTGATTTGACAAAGTTAAAAATGGTAGGCAAAGATGCAG
AGGAAGGCGGCGTTGTCTCGATTAGTCATACGGGTTGGTTGAGTGAGAAA
GTTTATAGAGTCTTTTTATTACttagataaaaatattaacTCTGAAGACA
AAGGAAAAGGCTGTATCACCGTAGTAAAATAAACCTTTAGCTTCGCTACC
ATGTGACAACATGTGGAAAGCACATTGTTTTGATTCTCGCAGCATTTACT
CAAACTTCCTTCGCCTCCTACTACCACGGAAAAGTTCGACTTCTTTAATT
TATCTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010877XLOC_010877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019357-exon-sc0000325-1491911889:193904..194311TCONS_00019357-exon-sc0000325-1491911889:193904..194311Clytia hemisphaericaexon
TCONS_00019357-exon-sc0000325-1510915933:193904..194311TCONS_00019357-exon-sc0000325-1510915933:193904..194311Clytia hemisphaericaexon
TCONS_00019357-exon-sc0000325-1575043694:193904..194311TCONS_00019357-exon-sc0000325-1575043694:193904..194311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:193904..194311 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.359902	0.702824	0.202827	2.19265	0.72964	0.764643	0.232377	0.435022	0.151043	0.561049	0.361243	0.119766	0.118928	0.123135	0.814002	0.654708	0.267668	0.412949	0.190812	0.198843	0.173043	0	0.409431	0	0	0.518089	0	0.262272	0	0.201605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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