TCONS_00019345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019345
Unique NameTCONS_00019345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019345 ID=TCONS_00019345|Name=TCONS_00019345|organism=Clytia hemisphaerica|type=transcript|length=1699bp
aaaaagtataaaaggACAACTTTGTATAACATTTCAATCATAAACATTTG
ATACTAAATCTCCAAGCATCATCTCAAGAAACAGCTTGGTAACACTACAA
TCAAGATGAGAACTCTAGTTGCTCTTTTACTCCTTGGAGTAGTTGCTTTA
GCATCTGCATCCTACTCATCAAGATCATTTTTCGACAACTGTTGTAAACC
AGGAGCCAAGGGACATACAGGACCCCAGGGTCCCAAAGGAAATGATGGAG
ACAAAGGAGAAACTGGAGATGTAGGACCCAAAGGACACCCAGGACCAAAA
GGAAAGACTGGACACAAAGGAGCAGTAGGACTTAAAGGATTTACAGGACC
AAGAGGTGACAAAGGACACCCAGGACAACAAGGAAAAACAGGACATCCAG
GACCAGTTGGACCAAAAGGAGAAACAGGACCAAAAGGAGATTCTAGCAAA
GGACACCCAGGACTAGTTGGACCTAAAGGAGCCACTGGCATGACAGGACC
ACAAGGAGATAAAGGACCACAAGGACCAGCTGGTGCTGATGGTACTGACG
GAAAACCGGGACATCCTGGACAAGACGGCCCACGTGGTCCAACTGGACAC
CCAGGAAAAGACGGCAAACCAGGCAAAGATGGTAAACCAGGAAAAGACGG
TGAAGATGGCAAGAGAGGAAAGAGAGGATTCACAGGAACAAAAGGAGATG
CTGGAGCTGATGGTAAAGATGGTGCTGACGGTGCCACTGGACCAGCTGGT
CAAGACGGTGCACCTGGTAAAGATGGAGCTGCAGGCAAAGCAGGACATCC
AGGAAAAGACGGAAACAAAGGTGCCAAAGGAGAAACAGGAGATAAAGGAC
AACCTGGATCTGACGGACTTGATGGTGGTGCTGGACCCGTTGGACAAAAA
GGAAACAAAGGAGAAACTGGCCCAACAGGAAACACAGGAGCACCAGGAAA
GAATGGACATCCAGGAGCTAAAGGACAAGACGGAACTGATGGTAAAGACG
GCAAAGATGGAAAACCAGGAAAAGCAGGACACCCAGGACCACGAGGACCA
CGAGGACCAAAAGGACCACGAGGATTCAAAGGAGAAGCTGGTGATGATGG
TGATGATGGCAAAGATGGAGCACCAGGATTTGATGGACAACAAGGACCAC
GTGGAGAGAAAGGACCACGAGGACCACAAGGACCACAAGGACCAGCTGGA
AAAGATGGTGCTGATGGTGCTGATGGTGCTAACGGAAAAGACGGTGACTG
TCCCAGCCTTAACTACAAAGAATGCGTCTATGGAGAATCTCCAATTAACC
GTGGAATCCTCTTCCCAGATgcaTGTGCTATTGGACGTGCTCAAAGCAAC
TCACGACTTCGTGTTGTTTTCAACAGCAAAATCATTTTGACTTGCGATGC
CCTTACACGTAAATACAACCCTAAGGGATGTTGTGCACAATACGATATCG
TCGTCGATAACGTCGTTATGTTCTCCCGACAACGTATTCTTCATGTTACC
CCATACTTGACGGACAACATCAATATTGAAACTTTGGTCGTTGCACAGAA
GAAACACTCCAAAGTTCAAATCAAACTTTCCGAATGCGGCAACCCCAAAT
TCGAATACATCAACAAAGCACATGCAGGCCAATTTGAACACAGCCGTGTC
ATCATTGAGGAATTGAACTTTGCCGGATTTAACGGACAAAGCAAAATCC
Run BLAST on NCBI

transcript from alignment at sc0000325:239031..241263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019345 ID=TCONS_00019345|Name=TCONS_00019345|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at sc0000325:239031..241263- (Clytia hemisphaerica)
AAAAAGTATAAAAGGACAACTTTGTATAACATTTCAATCATAAACATTTG
ATACTAAATCTCCAAGCATCATCTCAAGAAACAGCTTGGTAACACTACAA
TCAAGATGAGAACTCTAGTTGCTCTTTTACTCCTTGGAGTAGTTGCTTTA
GCATCTGCATCCTACTCAGTAAGTATAATCAGATTCATCTCAATTCAAAT
CACCAGATCTTATAATCTATAGTTTTATTCGAAGGAAAAAAAGAAATATG
TTTTCATTTTAAGTCCTCATATACTCATCATATAATACTCGTCTTAGGTT
TTCAAAACCATTTCTGTATGTATTCTTTTCATATATAACTGGAAAATTTT
CCAAACATTTTCTTCTTCTTTTTTCCAGTCAAGATCATTTTTCGACAACT
GTTGTAAACCAGGAGCCAAGGGACATACAGGACCCCAGGGTCCCAAAGGA
AATGATGGAGACAAAGGAGAAACTGGAGATGTAGGACCCAAAGGACACCC
AGGACCAAAAGGAAAGACTGGACACAAAGGAGCAGTAGGACTTAAAGGAT
TTACAGGACCAAGAGGTGACAAAGGACACCCAGGACAACAAGGAAAAACA
GGACATCCAGGACCAGTTGGACCAAAAGGAGAAACAGGACCAAAAGGAGA
TTCTAGCAAAGGACACCCAGGACTAGTTGGACCTAAAGGAGCCACTGGCA
TGACAGGACCACAAGGAGATAAAGGACCACAAGGACCAGCTGGTGCTGAT
GGTACTGACGGAAAACCGGGACATCCTGGACAAGACGGCCCACGTGGTCC
AACTGGACACCCAGGAAAAGACGGCAAACCAGGCAAAGATGGTAAACCAG
GAAAAGACGGTGAAGATGGCAAGAGAGGAAAGAGAGGATTCACAGGAACA
AAAGGAGATGCTGGAGCTGATGGTAAAGATGGTGCTGACGGTGCCACTGG
ACCAGCTGGTCAAGACGGTGCACCTGGTAAAGATGGAGCTGCAGGCAAAG
CAGGACATCCAGGAAAAGACGGAAACAAAGGTGCCAAAGGAGAAACAGGA
GATAAAGGACAACCTGGATCTGACGGACTTGATGGTGGTGCTGGACCCGT
TGGACAAAAAGGAAACAAAGGAGAAACTGGCCCAACAGGAAACACAGGAG
CACCAGGAAAGAATGGACATCCAGGAGCTAAAGGACAAGACGGAACTGAT
GGTAAAGACGGCAAAGATGGAAAACCAGGAAAAGCAGGACACCCAGGACC
ACGAGGACCACGAGGACCAAAAGGACCACGAGGATTCAAAGGAGAAGCTG
GTGATGATGGTGATGATGGCAAAGATGGAGCACCAGGATTTGATGGACAA
CAAGGACCACGTGGAGAGAAAGGACCACGAGGACCACAAGGACCACAAGG
ACCAGCTGGAAAAGATGGTGCTGATGGTGCTGATGGTGCTAACGGAAAAG
ACGGTGACTGTCCCAGCCTTAACTACAAAGAATGCGTCTATGGAGAATCT
CCAATTAACCGTGGAATCCTCTTCCCAGATGTAAGTGACTTTTTATATAA
ATAAAGTTCATATAGACAATACTTCACAGAGAGACAGGCTCTTTCTGCTC
CTTCTGATAATTATTCGGCTTTAAAGGTTAATTATCTGAATGATTATTCC
ACAATAATAAATTAGCATAATTTATTCAATGAAAATGCACAGAAGGAAAC
AAAGGTTAGCAATCACATATCAAAGCATACTTCTTCCTTCAAGTAGAGTC
AGCGATAACCAGATAATTGACAGGTGAAAACTACTGTTATGACTATCTAA
TACTCTGCTATGGGAAAACTAGATCGTAATCCAATTCATTTTCTTTTTTT
TCAGGCATGTGCTATTGGACGTGCTCAAAGCAACTCACGACTTCGTGTTG
TTTTCAACAGCAAAATCATTTTGACTTGCGATGCCCTTACACGTAAATAC
AACCCTAAGGGATGTTGTGCACAATACGATATCGTCGTCGATAACGTCGT
TATGTTCTCCCGACAACGTATTCTTCATGTTACCCCATACTTGACGGACA
ACATCAATATTGAAACTTTGGTCGTTGCACAGAAGAAACACTCCAAAGTT
CAAATCAAACTTTCCGAATGCGGCAACCCCAAATTCGAATACATCAACAA
AGCACATGCAGGCCAATTTGAACACAGCCGTGTCATCATTGAGGAATTGA
ACTTTGCCGGATTTAACGGACAAAGCAAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010865XLOC_010865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019345-exon-sc0000325-1575043694:241096..241263TCONS_00019345-exon-sc0000325-1575043694:241096..241263Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1575043694:239734..240885TCONS_00019345-exon-sc0000325-1575043694:239734..240885Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1575043694:239031..239409TCONS_00019345-exon-sc0000325-1575043694:239031..239409Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1510915933:241096..241263TCONS_00019345-exon-sc0000325-1510915933:241096..241263Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1510915933:239734..240885TCONS_00019345-exon-sc0000325-1510915933:239734..240885Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1510915933:239031..239409TCONS_00019345-exon-sc0000325-1510915933:239031..239409Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1491911889:241096..241263TCONS_00019345-exon-sc0000325-1491911889:241096..241263Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1491911889:239734..240885TCONS_00019345-exon-sc0000325-1491911889:239734..240885Clytia hemisphaericaexon
TCONS_00019345-exon-sc0000325-1491911889:239031..239409TCONS_00019345-exon-sc0000325-1491911889:239031..239409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:239031..241263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0464381	0.0269595	0.0263757	1.27784	0.651085	0.118284	0.511959	0.238047	0.394273	0.00036206	0.365149	149.923	172.249	3442.67	707.729	52.2613	25.1291	1.9844	0.345583	0	0	0.0546015	0.0248203	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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