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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019342 ID=TCONS_00019342|Name=TCONS_00019342|organism=Clytia hemisphaerica|type=transcript|length=1955bp
CATCATTACAACTTGTAGATCGAACAAAAAACGATCTcaacaaaaaacga
aaatccaaCATGGCacatttgaaattatttctATCACTTTTGTTCTGCGC
TATTGCAGTTCAAACTGCTGCTGGCTGGTCGAGTATTAGACCAAGACGTC
TCCAATGTTGTGCTAGCTCTAAATACTACGTTGGCGTGTCAAGAACCAAA
GGTTTGACCGGACATCCAGGAGCAAAAGGCAAAGATGGAGAAGATGGGCA
TAAAGGTGCTGTTGGACCAAAAGGACCACAAGGAGACCAAGGATCAAAAG
GAGCCACTGGACACCGTGGACGTCGTGGTGATGTAGGACCAAAAGGACCA
AAAGGATTCCCAGGACGTCGAGGAGATCAAGGAGCTGATGGTGAACAAGG
ACCACAAGGACACCAAGGACCAAAAGGACCAACCACCAAAGGACCAGTTG
GACCACGAGGAGATCGTGGACACAAAGGAGCCAAAGGACACAAAGGACCA
GTTGGACCACGAGGAGATAAAGGACATGATGGCAAAGACGGTGAAGATGG
TACACCAGGACAAAACGGAGGAGCAGGACCAAAAGGATTCGCAGGACACG
ATGGTGCCAATGGCAAACCAGGACAAGATGGTAACCCAGGACAAGACGGA
GAACAAGGACACCGTGGACCACGTGGAGATAAAGGAGCTACTGGACATCC
TGGACAAGATGGTGAAGATGGAAAACCAGGACGTCAAGGTCAAGCAGGAC
ATCCCGGACAAGATGGCAAAGATGGCAAAGCAGGAGCTAACGGAAACAAT
GGTGATGATGGAGCTAGAGGAGATAAAGGACCACAAGGAGCACCAGGAAC
ACCAGGTAGTGATGCTGGAAACGGACCAGTTGGACCAACAGGTGCTGATG
GTGAAACAGGAGATAGTGGACACCCAGGAGCCGCTGGTAAAGATGGTGAA
GATGGTGCCGCAGGACACCCAGGAAGAAACGGAGAAGACGGTAAAGACGG
TGCTAATGGACAAGATGGTAGCCCAGGACCAGTTGGACCAGTTGGACCAG
TCGGTAAACGTGGACACCCAGGAGCAAAAGGACATGACGGTAAAGACGGA
AAAGATGGTAAAGATGGTAAAGATGGTGCCCCAGGACACAAAGGTCCTAC
CGGACACCCAGGACCAGTTGGAGATGCCGGAGATGCCGGACATGATGGCA
AAGATGGTGCTGATGGTAAAGATGGTAGCGATGGTGAATGTGTTCCATTG
AACTACGCTGTTTGCGCTTCAGAAGATTACGATATCGGAAACATGAAATG
CTCATACCGACCAAAACGAAGAGGATCTCAAATCCGAGTTGTCGTTAACG
TTAACGTCGAATATTCCCAAGGATGTGCCAGATGGGAGGTTACCATTGGT
GGAAAACAATGTAATTCCAAATATCCACTCCGAAGAACCCGACTTAACCC
AACTGAAGATTATTACAAGGATGATTTGAACCTTGAAGGTGTCTGTGATC
GACCAGCTGGTGGACGTCCAATTGATGTTGTTGTCACTGCCTCTGGATGC
AAAGCTGGTGGATATGGTGCAGCCAAGAGAATCATTACCGGACGTAGCTC
CACACGTATCTTTATCGAAGAATTGAGCCATTAAATTGTTCATCCATGAC
GATTATGATTTGACTACTACAAAAAACGAAATAATGACAAAACGACAAAG
AGACTTTTTAATAATGTAGATTCAACATCTATAATATcgattattatttt
tataattgATAAAACGCCAAATCCCacaaatttttgtacaaaaaattttt
aaccttttctttttatttgccccttttaaatatatttttagttttataaa
atttttatcagtattatttttttctttttttgttagtTCATTGTTATTTG
AACAATAAATTTTTAGCAAAGCATTGAAAATGACTTAATAATTGTTATCT
TTATT Run BLAST on NCBI protein sequence of TCONS_00019342-protein >TCONS_00019342-protein ID=TCONS_00019342-protein|Name=TCONS_00019342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp
SLQLVDRTKNDLNKKRKSNMAHLKLFLSLLFCAIAVQTAAGWSSIRPRRL
QCCASSKYYVGVSRTKGLTGHPGAKGKDGEDGHKGAVGPKGPQGDQGSKG
ATGHRGRRGDVGPKGPKGFPGRRGDQGADGEQGPQGHQGPKGPTTKGPVG
PRGDRGHKGAKGHKGPVGPRGDKGHDGKDGEDGTPGQNGGAGPKGFAGHD
GANGKPGQDGNPGQDGEQGHRGPRGDKGATGHPGQDGEDGKPGRQGQAGH
PGQDGKDGKAGANGNNGDDGARGDKGPQGAPGTPGSDAGNGPVGPTGADG
ETGDSGHPGAAGKDGEDGAAGHPGRNGEDGKDGANGQDGSPGPVGPVGPV
GKRGHPGAKGHDGKDGKDGKDGKDGAPGHKGPTGHPGPVGDAGDAGHDGK
DGADGKDGSDGECVPLNYAVCASEDYDIGNMKCSYRPKRRGSQIRVVVNV
NVEYSQGCARWEVTIGGKQCNSKYPLRRTRLNPTEDYYKDDLNLEGVCDR
PAGGRPIDVVVTASGCKAGGYGAAKRIITGRSSTRIFIEELSH Run BLAST on NCBI transcript from alignment at sc0000325:216556..218735- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019342 ID=TCONS_00019342|Name=TCONS_00019342|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at sc0000325:216556..218735- (Clytia hemisphaerica)
CATCATTACAACTTGTAGATCGAACAAAAAACGATCTCAACAAAAAACGA
AAATCCAACATGGCACATTTGAAATTATTTCTATCACTTTTGTTCTGCGC
TATTGCAGTTCAAACTGCTGCTGGCTGGTCGAGTATTAGACCAAGACGTC
TCCAATGTTGTGCTAGCTCTAAATACTACGTTGGCGTGTCAAGAACCAAA
GGTTTGACCGGACATCCAGGAGCAAAAGGCAAAGATGGAGAAGATGGGCA
TAAAGGTGCTGTTGGACCAAAAGGACCACAAGGAGACCAAGGATCAAAAG
GAGCCACTGGACACCGTGGACGTCGTGGTGATGTAGGACCAAAAGGACCA
AAAGGATTCCCAGGACGTCGAGGAGATCAAGGAGCTGATGGTGAACAAGG
ACCACAAGGACACCAAGGACCAAAAGGACCAACCACCAAAGGACCAGTTG
GACCACGAGGAGATCGTGGACACAAAGGAGCCAAAGGACACAAAGGACCA
GTTGGACCACGAGGAGATAAAGGACATGATGGCAAAGACGGTGAAGATGG
TACACCAGGACAAAACGGAGGAGCAGGACCAAAAGGATTCGCAGGACACG
ATGGTGCCAATGGCAAACCAGGACAAGATGGTAACCCAGGACAAGACGGA
GAACAAGGACACCGTGGACCACGTGGAGATAAAGGAGCTACTGGACATCC
TGGACAAGATGGTGAAGATGGAAAACCAGGACGTCAAGGTCAAGCAGGAC
ATCCCGGACAAGATGGCAAAGATGGCAAAGCAGGAGCTAACGGAAACAAT
GGTGATGATGGAGCTAGAGGAGATAAAGGACCACAAGGAGCACCAGGAAC
ACCAGGTAGTGATGCTGGAAACGGACCAGTTGGACCAACAGGTGCTGATG
GTGAAACAGGAGATAGTGGACACCCAGGAGCCGCTGGTAAAGATGGTGAA
GATGGTGCCGCAGGACACCCAGGAAGAAACGGAGAAGACGGTAAAGACGG
TGCTAATGGACAAGATGGTAGCCCAGGACCAGTTGGACCAGTTGGACCAG
TCGGTAAACGTGGACACCCAGGAGCAAAAGGACATGACGGTAAAGACGGA
AAAGATGGTAAAGATGGTAAAGATGGTGCCCCAGGACACAAAGGTCCTAC
CGGACACCCAGGACCAGTTGGAGATGCCGGAGATGCCGGACATGATGGCA
AAGATGGTGCTGATGGTAAAGATGGTAGCGATGGTGAATGTGTTCCATTG
AACTACGCTGTTTGCGCTTCAGAAGATTACGATATCGGAAACATGGTAAG
TTAATCTTTCATTTCAAAATTGATTGTTTTTTTTTCAACAAAGATAATTC
AATTTGGTGATTTTTCTGCTTTATTCAATAATCTGACGTTTAAAAAACAC
CCATTTTCAAAAGCATGGTTTTGTCTTTGAAATTTGACATTTTCTTTTTG
AAAGTAATCTTGCATTTAAGTATTTTGAGGAACGTTGAATTAAACTATTC
ATACTCTTTTTCGTCATCAGAAATGCTCATACCGACCAAAACGAAGAGGA
TCTCAAATCCGAGTTGTCGTTAACGTTAACGTCGAATATTCCCAAGGATG
TGCCAGATGGGAGGTTACCATTGGTGGAAAACAATGTAATTCCAAATATC
CACTCCGAAGAACCCGACTTAACCCAACTGAAGATTATTACAAGGATGAT
TTGAACCTTGAAGGTGTCTGTGATCGACCAGCTGGTGGACGTCCAATTGA
TGTTGTTGTCACTGCCTCTGGATGCAAAGCTGGTGGATATGGTGCAGCCA
AGAGAATCATTACCGGACGTAGCTCCACACGTATCTTTATCGAAGAATTG
AGCCATTAAATTGTTCATCCATGACGATTATGATTTGACTACTACAAAAA
ACGAAATAATGACAAAACGACAAAGAGACTTTTTAATAATGTAGATTCAA
CATCTATAATATCGATTATTATTTTTATAATTGATAAAACGCCAAATCCC
ACAAATTTTTGTACAAAAAATTTTTAACCTTTTCTTTTTATTTGCCCCTT
TTAAATATATTTTTAGTTTTATAAAATTTTTATCAGTATTATTTTTTTCT
TTTTTTGTTAGTTCATTGTTATTTGAACAATAAATTTTTAGCAAAGCATT
GAAAATGACTTAATAATTGTTATCTTTATT Coding sequence (CDS) from alignment at sc0000325:216556..218735- >TCONS_00019342 ID=TCONS_00019342|Name=TCONS_00019342|organism=Clytia hemisphaerica|type=CDS|length=3264bp|location=Sequence derived from alignment at sc0000325:216556..218735- (Clytia hemisphaerica)
AAATGCTCATACCGACCAAAACGAAGAGGATCTCAAATCCGAGTTGTCGT
TAACGTTAACGTCGAATATTCCCAAGGATGTGCCAGATGGGAGGTTACCA
TTGGTGGAAAACAATGTAATTCCAAATATCCACTCCGAAGAACCCGACTT
AACCCAACTGAAGATTATTACAAGGATGATTTGAACCTTGAAGGTGTCTG
TGATCGACCAGCTGGTGGACGTCCAATTGATGTTGTTGTCACTGCCTCTG
GATGCAAAGCTGGTGGATATGGTGCAGCCAAGAGAATCATTACCGGACGT
AGCTCCACACGTATCTTTATCGAAGAATTGAGCCATTAATCATTACAACT
TGTAGATCGAACAAAAAACGATCTCAACAAAAAACGAAAATCCAACATGG
CACATTTGAAATTATTTCTATCACTTTTGTTCTGCGCTATTGCAGTTCAA
ACTGCTGCTGGCTGGTCGAGTATTAGACCAAGACGTCTCCAATGTTGTGC
TAGCTCTAAATACTACGTTGGCGTGTCAAGAACCAAAGGTTTGACCGGAC
ATCCAGGAGCAAAAGGCAAAGATGGAGAAGATGGGCATAAAGGTGCTGTT
GGACCAAAAGGACCACAAGGAGACCAAGGATCAAAAGGAGCCACTGGACA
CCGTGGACGTCGTGGTGATGTAGGACCAAAAGGACCAAAAGGATTCCCAG
GACGTCGAGGAGATCAAGGAGCTGATGGTGAACAAGGACCACAAGGACAC
CAAGGACCAAAAGGACCAACCACCAAAGGACCAGTTGGACCACGAGGAGA
TCGTGGACACAAAGGAGCCAAAGGACACAAAGGACCAGTTGGACCACGAG
GAGATAAAGGACATGATGGCAAAGACGGTGAAGATGGTACACCAGGACAA
AACGGAGGAGCAGGACCAAAAGGATTCGCAGGACACGATGGTGCCAATGG
CAAACCAGGACAAGATGGTAACCCAGGACAAGACGGAGAACAAGGACACC
GTGGACCACGTGGAGATAAAGGAGCTACTGGACATCCTGGACAAGATGGT
GAAGATGGAAAACCAGGACGTCAAGGTCAAGCAGGACATCCCGGACAAGA
TGGCAAAGATGGCAAAGCAGGAGCTAACGGAAACAATGGTGATGATGGAG
CTAGAGGAGATAAAGGACCACAAGGAGCACCAGGAACACCAGGTAGTGAT
GCTGGAAACGGACCAGTTGGACCAACAGGTGCTGATGGTGAAACAGGAGA
TAGTGGACACCCAGGAGCCGCTGGTAAAGATGGTGAAGATGGTGCCGCAG
GACACCCAGGAAGAAACGGAGAAGACGGTAAAGACGGTGCTAATGGACAA
GATGGTAGCCCAGGACCAGTTGGACCAGTTGGACCAGTCGGTAAACGTGG
ACACCCAGGAGCAAAAGGACATGACGGTAAAGACGGAAAAGATGGTAAAG
ATGGTAAAGATGGTGCCCCAGGACACAAAGGTCCTACCGGACACCCAGGA
CCAGTTGGAGATGCCGGAGATGCCGGACATGATGGCAAAGATGGTGCTGA
TGGTAAAGATGGTAGCGATGGTGAATGTGTTCCATTGAACTACGCTGTTT
GCGCTTCAGAAGATTACGATATCGGAAACATGAAATGCTCATACCGACCA
AAACGAAGAGGATCTCAAATCCGAGTTGTCGTTAACGTTAACGTCGAATA
TTCCCAAGGATGTGCCAGATGGGAGGTTACCATTGGTGGAAAACAATGTA
ATTCCAAATATCCACTCCGAAGAACCCGACTTAACCCAACTGAAGATTAT
TACAAGGATGATTTGAACCTTGAAGGTGTCTGTGATCGACCAGCTGGTGG
ACGTCCAATTGATGTTGTTGTCACTGCCTCTGGATGCAAAGCTGGTGGAT
ATGGTGCAGCCAAGAGAATCATTACCGGACGTAGCTCCACACGTATCTTT
ATCGAAGAATTGAGCCATTAATCATTACAACTTGTAGATCGAACAAAAAA
CGATCTCAACAAAAAACGAAAATCCAACATGGCACATTTGAAATTATTTC
TATCACTTTTGTTCTGCGCTATTGCAGTTCAAACTGCTGCTGGCTGGTCG
AGTATTAGACCAAGACGTCTCCAATGTTGTGCTAGCTCTAAATACTACGT
TGGCGTGTCAAGAACCAAAGGTTTGACCGGACATCCAGGAGCAAAAGGCA
AAGATGGAGAAGATGGGCATAAAGGTGCTGTTGGACCAAAAGGACCACAA
GGAGACCAAGGATCAAAAGGAGCCACTGGACACCGTGGACGTCGTGGTGA
TGTAGGACCAAAAGGACCAAAAGGATTCCCAGGACGTCGAGGAGATCAAG
GAGCTGATGGTGAACAAGGACCACAAGGACACCAAGGACCAAAAGGACCA
ACCACCAAAGGACCAGTTGGACCACGAGGAGATCGTGGACACAAAGGAGC
CAAAGGACACAAAGGACCAGTTGGACCACGAGGAGATAAAGGACATGATG
GCAAAGACGGTGAAGATGGTACACCAGGACAAAACGGAGGAGCAGGACCA
AAAGGATTCGCAGGACACGATGGTGCCAATGGCAAACCAGGACAAGATGG
TAACCCAGGACAAGACGGAGAACAAGGACACCGTGGACCACGTGGAGATA
AAGGAGCTACTGGACATCCTGGACAAGATGGTGAAGATGGAAAACCAGGA
CGTCAAGGTCAAGCAGGACATCCCGGACAAGATGGCAAAGATGGCAAAGC
AGGAGCTAACGGAAACAATGGTGATGATGGAGCTAGAGGAGATAAAGGAC
CACAAGGAGCACCAGGAACACCAGGTAGTGATGCTGGAAACGGACCAGTT
GGACCAACAGGTGCTGATGGTGAAACAGGAGATAGTGGACACCCAGGAGC
CGCTGGTAAAGATGGTGAAGATGGTGCCGCAGGACACCCAGGAAGAAACG
GAGAAGACGGTAAAGACGGTGCTAATGGACAAGATGGTAGCCCAGGACCA
GTTGGACCAGTTGGACCAGTCGGTAAACGTGGACACCCAGGAGCAAAAGG
ACATGACGGTAAAGACGGAAAAGATGGTAAAGATGGTAAAGATGGTGCCC
CAGGACACAAAGGTCCTACCGGACACCCAGGACCAGTTGGAGATGCCGGA
GATGCCGGACATGATGGCAAAGATGGTGCTGATGGTAAAGATGGTAGCGA
TGGTGAATGTGTTCCATTGAACTACGCTGTTTGCGCTTCAGAAGATTACG
ATATCGGAAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019342-exon-sc0000325-1575043694:217441..218735 | TCONS_00019342-exon-sc0000325-1575043694:217441..218735 | Clytia hemisphaerica | exon |
| TCONS_00019342-exon-sc0000325-1575043694:216556..217215 | TCONS_00019342-exon-sc0000325-1575043694:216556..217215 | Clytia hemisphaerica | exon |
| TCONS_00019342-exon-sc0000325-1510915933:217441..218735 | TCONS_00019342-exon-sc0000325-1510915933:217441..218735 | Clytia hemisphaerica | exon |
| TCONS_00019342-exon-sc0000325-1510915933:216556..217215 | TCONS_00019342-exon-sc0000325-1510915933:216556..217215 | Clytia hemisphaerica | exon |
| TCONS_00019342-exon-sc0000325-1491911889:217441..218735 | TCONS_00019342-exon-sc0000325-1491911889:217441..218735 | Clytia hemisphaerica | exon |
| TCONS_00019342-exon-sc0000325-1491911889:216556..217215 | TCONS_00019342-exon-sc0000325-1491911889:216556..217215 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:216556..218735 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
The following BLAST results are available for this feature:
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