TCONS_00019338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019338
Unique NameTCONS_00019338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019338 ID=TCONS_00019338|Name=TCONS_00019338|organism=Clytia hemisphaerica|type=transcript|length=823bp
ATTTTCTATTGGTATTGTTGAGTATTGTACGCATAAATGCTTCAAAATGT
TGGCCAAAGattccaGAGAACAATCATGGCATACAGCCAACCACTATAGT
GAATGAAGccgAAGATCTACAGCCAAACAATTTACTTCTTTTCATTCCAA
TTCTATCCAATGAATGGATTGTacaattacatttcaaaattctTACCGAG
CATGCTGGTGGAAGCAATTGGTGTAATATAATACATGTCACAAAGggtca
aaacaattttgtttaCGGAGATCGAACACCAGCCATCTTCTTTAATAagg
CAACTTCGCTACTAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTAC
GCTCGGTATCTAACAGTCCAATACAACACCGAATACAATGTGGAGATTCA
CCAGCGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATG
GAGAAGAAATTCACTCAACAGATAATACACAAGCTCAACAATTTTATGAC
ATGAAAGTTTACATTTCCGATCCTTGGCTTCCGGCATGCAATGGTTGGat
taaatatatcaaaattactaactttttataattttttatggacttttAGA
ATTTTATAGCTAAAAAGGCACATTTATTCAGCGTTTTACGGTGAAAATCT
CATTGTGAAACAAGACTTAGTTTTAGCGATATGAAGCTTCAAGTACGCCA
ATTTGGAGATTAAAAAAAGTTGAGATGGAAaactttcaaagcaaaaaagc
TAATTAATTAATGTTTGATTGACAGCTCTCTTTTATgcgattttgatgaa
attttttaattttaatggtTAAA
Run BLAST on NCBI

protein sequence of TCONS_00019338-protein

>TCONS_00019338-protein ID=TCONS_00019338-protein|Name=TCONS_00019338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
FLLVLLSIVRINASKCWPKIPENNHGIQPTTIVNEAEDLQPNNLLLFIPI
LSNEWIVQLHFKILTEHAGGSNWCNIIHVTKGQNNFVYGDRTPAIFFNKA
TSLLSIGSAVNGSKNYARYLTVQYNTEYNVEIHQRYKSGGVYKYSILLNG
EEIHSTDNTQAQQFYDMKVYISDPWLPACNGWIKYIKITNFL
Run BLAST on NCBI

transcript from alignment at sc0000325:200534..206438-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019338 ID=TCONS_00019338|Name=TCONS_00019338|organism=Clytia hemisphaerica|type=transcript|length=5905bp|location=Sequence derived from alignment at sc0000325:200534..206438- (Clytia hemisphaerica)
ATTTTCTATTGGTATTGTTGAGTATTGTACGCATAAATGCTTCAAAATGT
TGGCCAAAGGTAAGGAAAGTTTTTTAGAGTTTGAATAAAGACTCTATCTA
GCCTTGATTGGATGACGGCGATTAAGTAGCTCGATAGTATATGCATGGTC
ATTATAATTACATAGTTTCTTTATAATGACTATGGTACATGGGAAATCTC
AGTTTTTAGCTTTCGCGCCTGCGGACTGAAAAAAAGATTCTAGTTGTTTT
GCGAATATAAAAGATTAGACTAGCAAACTAGTATGTTAATTAATCATGTC
AGAGGGCGGGAACATAAAGGCGGCGGGCGNTAGACTAGCAAACTAGTCTG
TTAATTAATCATGTCAGAGGGCGGGAACATAAAGGCGGCGGGCGTTTGCT
AGAATAGGAGCTGCGTAGGAGAGCGAGCAAAAATTGGTGAGAGGTTGCTT
TCAGCCCTTGCCGCCGACAAATTTTTTCCTACGCTTACCTAACTCCTGCG
CTCACTTCTCCCGCGTGATACCGTTCCAGCCCGACTGGCGTGCCAGTCTA
ATAAAAGATTCATGTGGCAATGTTTATGTTTGAAAAGAGGGTATTGCTAA
TCCTTTTTTGATGTTTTTTTTTCGTTTTTTATCAAACCCGGGGAGGGGAT
TCCTTCGATTCCAAAACGTGCAGTGCTTTTTCAAAAATGGAAAAACTTTC
GGTTTTCGAGGATCCTGTTCGCACTTCCTCATCTTCTGCCAACCCTAGTA
CCCCCTGGGTTATTTATCTGATAAAGATTTGCATATTCACTCAATTCAAC
TATGTTCGAAATTTGATTTTAGTCCATAATAAAATCCTTTCCTTCAAAAA
CACAAAGAAAATGGAGTGAAGAAGTTCAATTCTATTTTTTTCAGATTCCA
GAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGGTAAGTA
TTTTTTATATCAATACGTCCTTTTTCTAACAAAGAATGTTTTTAGAAAAA
GTATAAAAGAATACTTTTTCAATGGTACTAAAAACCCTTGTCTAACTCTA
GTCTAATTGTCTAATTTTAGCTTTCAGCAANNNNNNNNNNNNNNNNNNNN
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AACACACACAAACTTTTTTACTCAATTGCATGTTCAAACTCGATACTTTT
ATTAGGGACACCCTGTACAAGTAACAGATTTTTGCTGATTTCTCGTGTAC
TAGCTATGTCCGCAGTAATGATAGTATTGCTCACTCTCCTTCCCTCATTA
AATGGTTTTTCGAAGCATTTTTATTGCATTTCTTATCGAAAACCACTCAT
CCAATTCCCAAAGGAGACTTAAAACTTTCCTGTGAGAGTCATATTCTTTC
ACTTAATTGCTAATTATAAGTCGTTATGACGTTTCAAGCTGTGAGAAAGA
TACAAAAGACGTCTTGTGTATAAGAAATTTAACGTTGACACCGGAAATTT
TCAAACTTCAACCTAAAAAAAACCACCTTGCCACCACGTGCCTCCAAAGG
ATTTTCATACCACAGTGGAGCCAAGACACTCAATTATTATGTATGTTAAT
TTCAGCTCTTCTGGGAACAGCCTTGGAAAGATATTTCCAATTCAAAATTT
TGTGTCACTATAAGCATTTTGGCTGGATATCTTGTCTAAAGATATTTTTC
TCTCATTAGATTTCACAAATGTATCTGGCTTGGAATACTAGCCTTACTTT
CAAACTCTTTTTTCTGCAAATGTACAAAAAGAAAGAGCTAGAGAACTTTT
TAAAAATAAGGCAGATAAACATTTTTAAAATCAGACATCTTCGAGCCGCC
ATGACAGTTGTCCTTTGCGGACAAAGCTAGAACATCAATTGTTTTCTGAA
ACAAAGGACATACAATGATCGCTCTCCATCGTTTTATGAGTCGTTTATCC
AGTGTATAATAAATCTTTGCTTTCAGATTTAATAAAAAAACGTTGGAAAT
TTTGAAATTGTTCAAAAAATGTTGCGTGCATAACTAGTGACACATCCCTT
TAAATCCTATTTTCCTGAATAACTCTCCCCCAGAGGACACTGTTGTAATA
TTTTTAACATTTTTTTTTCAGCCGAAGATCTACAGCCAAACAATTTACTT
CTTTTCATTCCAATTCTATCCAATGAATGGATTGTACAATTACATTTCAA
AATTCTTACCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACATG
TCACAAAGGGTCAAAACAATTTTGTTTACGGAGATCGAACACCAGCCATC
TTCTTTAATAAGGTGAAAAAGTTTTTGAAAAAAATCTTTATCAACCCTTC
AACGCCAAAATAAAATTTCTGCCTCATTGAAATCTTATTCATTTTCACAA
TTATCCAAAATCACCTATAATTTTTGTTTGAAGCACTAAATTCTAGGCAG
AGAAAAAACCTTCTGCAATGTGCCAAAATTAATTCAAAAATACTTTAAAA
AAAACTTTAAATTAATATTTCTTTGATTCCTTCCTTCTTCTCGCCGAATT
AGTTCACGCCATTTAACTTATTTGCTTTTTACTTTCAGACGGACTGTATT
TTTTATTTAATCATATTTGAAAAATCTTTAGGCAACTTCGCTACTAAGTA
TAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTAACAGTC
CAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAAAAGTGG
AGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAA
CAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTACATTTCC
GATCCTTGGCTTCCGGCATGCAATGGTTGGATTAAATATATCAAAATTAC
TAACTTTTTATAATTTTTTATGGACTTTTAGAATTTTATAGCTAAAAAGG
CACATTTATTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACAAGACTT
AGTTTTAGCGATATGAAGCTTCAAGTACGCCAATTTGGAGATTAAAAAAA
GTTGAGATGGAAAACTTTCAAAGCAAAAAAGCTAATTAATTAATGTTTGA
TTGACAGCTCTCTTTTATGCGATTTTGATGAAATTTTTTAATTTTAATGG
TTAAA

Coding sequence (CDS) from alignment at sc0000325:200534..206438-

>TCONS_00019338 ID=TCONS_00019338|Name=TCONS_00019338|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000325:200534..206438- (Clytia hemisphaerica)
GCAACTTCGCTACTAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTA
CGCTCGGTATCTAACAGTCCAATACAACACCGAATACAATGTGGAGATTC
ACCAGCGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAAT
GGAGAAGAAATTCACTCAACAGATAATACACAAGCTCAACAATTTTATGA
CATGAAAGTTTACATTTCCGATCCTTGGCTTCCGGCATGCAATGGTTGGA
TTAAATATATCAAAATTACTAACTTTTTATAACCGAAGATCTACAGCCAA
ACAATTTACTTCTTTTCATTCCAATTCTATCCAATGAATGGATTGTACAA
TTACATTTCAAAATTCTTACCGAGCATGCTGGTGGAAGCAATTGGTGTAA
TATAATACATGTCACAAAGGGTCAAAACAATTTTGTTTACGGAGATCGAA
CACCAGCCATCTTCTTTAATAAGATTCCAGAGAACAATCATGGCATACAG
CCAACCACTATAGTGAATGAAGTTTCTATTGGTATTGTTGAGTATTGTAC
GCATAAATGCTTCAAAATGTTGGCCAAAGGCAACTTCGCTACTAAGTATA
GGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTAACAGTCCA
ATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAAAAGTGGAG
GTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAACA
GATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTACATTTCCGA
TCCTTGGCTTCCGGCATGCAATGGTTGGATTAAATATATCAAAATTACTA
ACTTTTTATAACCGAAGATCTACAGCCAAACAATTTACTTCTTTTCATTC
CAATTCTATCCAATGAATGGATTGTACAATTACATTTCAAAATTCTTACC
GAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACATGTCACAAAGGG
TCAAAACAATTTTGTTTACGGAGATCGAACACCAGCCATCTTCTTTAATA
AGATTCCAGAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAA
GTTTCTATTGGTATTGTTGAGTATTGTACGCATAAATGCTTCAAAATGTT
GGCCAAAGGCAACTTCGCTACTAAGTATAGGATCGGCAGTGAATGGCAGC
AAAAATTACGCTCGGTATCTAACAGTCCAATACAACACCGAATACAATGT
GGAGATTCACCAGCGATACAAAAGTGGAGGTGTTTACAAATATTCCATCC
TTCTCAATGGAGAAGAAATTCACTCAACAGATAATACACAAGCTCAACAA
TTTTATGACATGAAAGTTTACATTTCCGATCCTTGGCTTCCGGCATGCAA
TGGTTGGATTAAATATATCAAAATTACTAACTTTTTATAACCGAAGATCT
ACAGCCAAACAATTTACTTCTTTTCATTCCAATTCTATCCAATGAATGGA
TTGTACAATTACATTTCAAAATTCTTACCGAGCATGCTGGTGGAAGCAAT
TGGTGTAATATAATACATGTCACAAAGGGTCAAAACAATTTTGTTTACGG
AGATCGAACACCAGCCATCTTCTTTAATAAGATTCCAGAGAACAATCATG
GCATACAGCCAACCACTATAGTGAATGAAGTTTCTATTGGTATTGTTGAG
TATTGTACGCATAAATGCTTCAAAATGTTGGCCAAAGGCAACTTCGCTAC
TAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTA
ACAGTCCAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAA
AAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTC
ACTCAACAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTAC
ATTTCCGATCCTTGGCTTCCGGCATGCAATGGTTGGATTAAATATATCAA
AATTACTAACTTTTTATAACCGAAGATCTACAGCCAAACAATTTACTTCT
TTTCATTCCAATTCTATCCAATGAATGGATTGTACAATTACATTTCAAAA
TTCTTACCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACATGTC
ACAAAGGGTCAAAACAATTTTGTTTACGGAGATCGAACACCAGCCATCTT
CTTTAATAAGATTCCAGAGAACAATCATGGCATACAGCCAACCACTATAG
TGAATGAAGTTTCTATTGGTATTGTTGAGTATTGTACGCATAAATGCTTC
AAAATGTTGGCCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010862XLOC_010862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019338-exon-sc0000325-1575043694:206380..206438TCONS_00019338-exon-sc0000325-1575043694:206380..206438Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1575043694:205496..205544TCONS_00019338-exon-sc0000325-1575043694:205496..205544Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1575043694:201377..201567TCONS_00019338-exon-sc0000325-1575043694:201377..201567Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1575043694:200534..201057TCONS_00019338-exon-sc0000325-1575043694:200534..201057Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1510915933:206380..206438TCONS_00019338-exon-sc0000325-1510915933:206380..206438Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1510915933:205496..205544TCONS_00019338-exon-sc0000325-1510915933:205496..205544Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1510915933:201377..201567TCONS_00019338-exon-sc0000325-1510915933:201377..201567Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1510915933:200534..201057TCONS_00019338-exon-sc0000325-1510915933:200534..201057Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1491911889:206380..206438TCONS_00019338-exon-sc0000325-1491911889:206380..206438Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1491911889:205496..205544TCONS_00019338-exon-sc0000325-1491911889:205496..205544Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1491911889:201377..201567TCONS_00019338-exon-sc0000325-1491911889:201377..201567Clytia hemisphaericaexon
TCONS_00019338-exon-sc0000325-1491911889:200534..201057TCONS_00019338-exon-sc0000325-1491911889:200534..201057Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019338-proteinTCONS_00019338-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:200534..206438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.40608	0.624783	0	0.177837	1.32267	5.68209	0	0	0	1.84821	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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