|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019327 ID=TCONS_00019327|Name=TCONS_00019327|organism=Clytia hemisphaerica|type=transcript|length=1852bp
ATAACTTTatgtaaatatttttctcataTATATAAATCATCTCCATTCAT
TTCTAAAGTTGCcagtgaaaaaagttgaaacgaTAAGCAGTTCGTTGTAC
TTAGTCGAACTAGGAAAAATCACTACTAGAACTCagtagttcttacaaaa
aaatgtcaCCAGCTCGTACAGATTTGATCGTAGATGGGGAGTTTTACCAA
AGGACGAAATTCCTGGCAAATTATGTGCTGAAGAAACATCATAATCATAC
GCAAAGAACTGATAGAATCGGGGATAAACTTTATGAACTATGTCTTGATA
TTAAATATAAGCATgatatgttttttgaaaatgtagGACGTGAACTTGGG
TTAAATCAAGAGAATTTTGATGAACTTTCTAAAGCTGTTATGGCAGAAGT
ACTAAATGGAAATTGTAACTTTGGTCGTATTGTATCAATCTATGCATTCA
GCTTAGCGCTTTCAGATTATTGTATCAAAAATAACTTAGGAGATAAAACA
GAAAGTATTACAACAAATGTAGCATTATCCATACAAGAACACATTGAATG
GTTTAATAACCATGGTCAATGGgacGGTTTTTTAGACCACTTCACACCAC
AAACTGTAGAAGACAAAGTTTGGCGTGGAATGATGATCACGACCTTTGGA
CTAGGAGCTGTTGCAGGGCTTATATATGCTCATTCATAATATATGCTCAT
TCATAGGCTGATTACAGTAAATTGACGACAAGGAGAAGTTCAGTTCCTGT
GACCATCATTGTCTTGGGAATTCATTCTACATTACATTCATAGTATCACA
CTTGAATCAGGCTTGGAAGTTCTATGCCACTAAAGATGATACATTTCTGT
TGACCATAATGAAGTGTTATGACAAAGGAAGCCTTGAGCGACCCGAATAA
ATTTCCTTTGCattgaaaatcctttttggatgattttgttaattttcaga
GATATCACTACATTCAAGGGagtaaaaaaacaaactgaaataATAGAAAA
CTTCTGACGTAAAAATATGTAAATACATTTGAACGGGGAGCTGGCTCCAC
GTTCTCATTTTCAGAACaatgaatatcaataattttttaacaaaatttct
aGGCTAAGAATTTTCGAATTTTATATAGTTTAGAGATATATAACATGTTC
CCAGGAAATTACTTGATGGATCTTTAGATGAGctaatttttaatcaaaac
atGTTATGATTAGGTTCAATGGACGTAAAACAAGATTCCTTTATTATCat
gtttacatttttatgattgtgtttttaaacatttttttgttaataaaaga
gaaaaattatcCCTGTTTTTATCCAATCAtcataaaaagaaaagtttgtg
tCATTCATTTTTGTGATGAAAAAATTAGTGTGAAATGATTTGGAAAGAAA
TTTGATCCCTTAGAAACCTTTGATCCACATATTGTCATAATGTATACTTT
GTAATCAAATCTAGCAGTCCTCTTGTTTACGTATTTCAAGCCAAATCTTG
TTTACGACTTGCCTCGTTCTCATCTCTCATGTGGTTGTTGAATAATATAT
TATTAGAAATTCTTTCCTAATTGCTAAGTAAAGTCATTAGCATCTTTCTA
ATTGCGTTCAAATTGTcattattctttattttaatCACCTACTCGAATTT
CTGGTCGAACAGGTTTTCCTTGTGACGTcacttcttcaaaaattttgatt
aggTAGAtagatttttatgacgtatCTCTTTCTGCTGTACCaatatttat
tttctgaaaTCTTTGCGCAAAATCAATAATTggttaagatttttgaaaaa
agagatTTCAAGGGAAAAGTAGATTTTCTTAAGTTTTCTGAAAAAGTGGA
GA Run BLAST on NCBI protein sequence of TCONS_00019327-protein >TCONS_00019327-protein ID=TCONS_00019327-protein|Name=TCONS_00019327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MSPARTDLIVDGEFYQRTKFLANYVLKKHHNHTQRTDRIGDKLYELCLDI
KYKHDMFFENVGRELGLNQENFDELSKAVMAEVLNGNCNFGRIVSIYAFS
LALSDYCIKNNLGDKTESITTNVALSIQEHIEWFNNHGQWDGFLDHFTPQ
TVEDKVWRGMMITTFGLGAVAGLIYAHS Run BLAST on NCBI transcript from alignment at sc0000325:30289..32334- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019327 ID=TCONS_00019327|Name=TCONS_00019327|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at sc0000325:30289..32334- (Clytia hemisphaerica)
ATAACTTTATGTAAATATTTTTCTCATATATATAAATCATCTCCATTCAT
TTCTAAAGTTGCCAGTGAAAAAAGTTGAAACGATAAGCAGTTCGTTGTAC
TTAGTCGAACTAGGAAAAATCACTACTAGAACTCAGTAGTTCTTACAAAA
AAATGTCACCAGCTCGTACAGATTTGATCGTAGATGGGGAGTTTTACCAA
AGGACGAAATTCCTGGCAAATTATGTGCTGAAGAAACATCATAATCATAC
GCAAAGAACTGATAGAATCGGGGATAAACTTTATGAACTATGTCTTGATA
TTAAATATAAGCATGATATGTTTTTTGAAAATGTAGGACGTGAACTTGGG
TTAAATCAAGAGAATTTTGATGAACTTTCTAAAGCTGTTATGGCAGAAGT
ACTAAATGGAAATTGTAACTTTGGTCGTATTGTATCAATCTATGCATTCA
GCTTAGCGCTTTCAGATTATTGTATCAAAAATAACTTAGGAGATAAAACA
GAAAGTATTACAACAAATGTAGCATTATCCATACAAGAACACATTGAATG
GTTTAATAACCATGGTCAATGGGTAAGCATTTTCACAAATTCCTTTTTTT
TTTTTAGTTCCCAGTCCTATCCTAGTGTGTTCAATTCTCGTCACACCAGG
TCACACTGATATTGACTATTTTGAGAGTTCCAGAAAGACTTTTTGTTATG
TAAGATTAAACACCAACTTAGTTTTCGAACTATTTTCTAATTTACAAATT
ATTTTTTATTTTTTAGGACGGTTTTTTAGACCACTTCACACCACAAACTG
TAGAAGACAAAGTTTGGCGTGGAATGATGATCACGACCTTTGGACTAGGA
GCTGTTGCAGGGCTTATATATGCTCATTCATAATATATGCTCATTCATAG
GCTGATTACAGTAAATTGACGACAAGGAGAAGTTCAGTTCCTGTGACCAT
CATTGTCTTGGGAATTCATTCTACATTACATTCATAGTATCACACTTGAA
TCAGGCTTGGAAGTTCTATGCCACTAAAGATGATACATTTCTGTTGACCA
TAATGAAGTGTTATGACAAAGGAAGCCTTGAGCGACCCGAATAAATTTCC
TTTGCATTGAAAATCCTTTTTGGATGATTTTGTTAATTTTCAGAGATATC
ACTACATTCAAGGGAGTAAAAAAACAAACTGAAATAATAGAAAACTTCTG
ACGTAAAAATATGTAAATACATTTGAACGGGGAGCTGGCTCCACGTTCTC
ATTTTCAGAACAATGAATATCAATAATTTTTTAACAAAATTTCTAGGCTA
AGAATTTTCGAATTTTATATAGTTTAGAGATATATAACATGTTCCCAGGA
AATTACTTGATGGATCTTTAGATGAGCTAATTTTTAATCAAAACATGTTA
TGATTAGGTTCAATGGACGTAAAACAAGATTCCTTTATTATCATGTTTAC
ATTTTTATGATTGTGTTTTTAAACATTTTTTTGTTAATAAAAGAGAAAAA
TTATCCCTGTTTTTATCCAATCATCATAAAAAGAAAAGTTTGTGTCATTC
ATTTTTGTGATGAAAAAATTAGTGTGAAATGATTTGGAAAGAAATTTGAT
CCCTTAGAAACCTTTGATCCACATATTGTCATAATGTATACTTTGTAATC
AAATCTAGCAGTCCTCTTGTTTACGTATTTCAAGCCAAATCTTGTTTACG
ACTTGCCTCGTTCTCATCTCTCATGTGGTTGTTGAATAATATATTATTAG
AAATTCTTTCCTAATTGCTAAGTAAAGTCATTAGCATCTTTCTAATTGCG
TTCAAATTGTCATTATTCTTTATTTTAATCACCTACTCGAATTTCTGGTC
GAACAGGTTTTCCTTGTGACGTCACTTCTTCAAAAATTTTGATTAGGTAG
ATAGATTTTTATGACGTATCTCTTTCTGCTGTACCAATATTTATTTTCTG
AAATCTTTGCGCAAAATCAATAATTGGTTAAGATTTTTGAAAAAAGAGAT
TTCAAGGGAAAAGTAGATTTTCTTAAGTTTTCTGAAAAAGTGGAGA Coding sequence (CDS) from alignment at sc0000325:30289..32334- >TCONS_00019327 ID=TCONS_00019327|Name=TCONS_00019327|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000325:30289..32334- (Clytia hemisphaerica)
GACGGTTTTTTAGACCACTTCACACCACAAACTGTAGAAGACAAAGTTTG
GCGTGGAATGATGATCACGACCTTTGGACTAGGAGCTGTTGCAGGGCTTA
TATATGCTCATTCATAAATGTCACCAGCTCGTACAGATTTGATCGTAGAT
GGGGAGTTTTACCAAAGGACGAAATTCCTGGCAAATTATGTGCTGAAGAA
ACATCATAATCATACGCAAAGAACTGATAGAATCGGGGATAAACTTTATG
AACTATGTCTTGATATTAAATATAAGCATGATATGTTTTTTGAAAATGTA
GGACGTGAACTTGGGTTAAATCAAGAGAATTTTGATGAACTTTCTAAAGC
TGTTATGGCAGAAGTACTAAATGGAAATTGTAACTTTGGTCGTATTGTAT
CAATCTATGCATTCAGCTTAGCGCTTTCAGATTATTGTATCAAAAATAAC
TTAGGAGATAAAACAGAAAGTATTACAACAAATGTAGCATTATCCATACA
AGAACACATTGAATGGTTTAATAACCATGGTCAATGGGACGGTTTTTTAG
ACCACTTCACACCACAAACTGTAGAAGACAAAGTTTGGCGTGGAATGATG
ATCACGACCTTTGGACTAGGAGCTGTTGCAGGGCTTATATATGCTCATTC
ATAAATGTCACCAGCTCGTACAGATTTGATCGTAGATGGGGAGTTTTACC
AAAGGACGAAATTCCTGGCAAATTATGTGCTGAAGAAACATCATAATCAT
ACGCAAAGAACTGATAGAATCGGGGATAAACTTTATGAACTATGTCTTGA
TATTAAATATAAGCATGATATGTTTTTTGAAAATGTAGGACGTGAACTTG
GGTTAAATCAAGAGAATTTTGATGAACTTTCTAAAGCTGTTATGGCAGAA
GTACTAAATGGAAATTGTAACTTTGGTCGTATTGTATCAATCTATGCATT
CAGCTTAGCGCTTTCAGATTATTGTATCAAAAATAACTTAGGAGATAAAA
CAGAAAGTATTACAACAAATGTAGCATTATCCATACAAGAACACATTGAA
TGGTTTAATAACCATGGTCAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019327-exon-sc0000325-1575043694:31763..32334 | TCONS_00019327-exon-sc0000325-1575043694:31763..32334 | Clytia hemisphaerica | exon |
| TCONS_00019327-exon-sc0000325-1575043694:30289..31568 | TCONS_00019327-exon-sc0000325-1575043694:30289..31568 | Clytia hemisphaerica | exon |
| TCONS_00019327-exon-sc0000325-1510915933:31763..32334 | TCONS_00019327-exon-sc0000325-1510915933:31763..32334 | Clytia hemisphaerica | exon |
| TCONS_00019327-exon-sc0000325-1510915933:30289..31568 | TCONS_00019327-exon-sc0000325-1510915933:30289..31568 | Clytia hemisphaerica | exon |
| TCONS_00019327-exon-sc0000325-1491911889:31763..32334 | TCONS_00019327-exon-sc0000325-1491911889:31763..32334 | Clytia hemisphaerica | exon |
| TCONS_00019327-exon-sc0000325-1491911889:30289..31568 | TCONS_00019327-exon-sc0000325-1491911889:30289..31568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:30289..32334 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042981 | regulation of apoptotic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0042981 |
regulation of apoptotic process |
Blast
The following BLAST results are available for this feature:
|
