TCONS_00019285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019285
Unique NameTCONS_00019285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019285 ID=TCONS_00019285|Name=TCONS_00019285|organism=Clytia hemisphaerica|type=transcript|length=1621bp
AAACGGTTTTTAACGGTGGACATTGTTTATCTTGAGGCttgttaagaaaa
ataaactaaatGAACCCGAACCCACATTTTTATTGAGAAAAATGAAGCTT
TTTGATTCGGCTTTGGCTAATATTTTGCTCTGAATATAAAGTATAAGTTC
GTCACTTTTTggtttgaaactcaaaaatttgttaaaatgaaTCGTGGAAT
GAATCGAAGACAAATGGAAGATAAATGTTGGAAATGTTTTGGAATGATTC
AAGGTGAAAAAGTCAGATACCAAGaaaagcaattttgcacaagaTGCTAT
CAGTGTGATGGGTGCAAACTGTCTCTAAAAAATAAAACTTGTCACGAAGA
AGGGGGTCAATTGTATTGCAAAGATTGTTGGAATATCATACAGCAAGATA
AATGTTACAAATGTAAAACACTGATTAAAGTAAATGGACAAAAGTACCGA
GGAAAACTTTACCATGAAGAATGTTTCACTTGTAGCGCATGTAACTGCTC
CCTTGTAGGTTTAAAATTTCACGAGGACGAAGGTCGTTACTACTGCGAAG
GTAAATGTTATCAAGACCTTGGTGCTTATGTTTGCAATGGTTGTGGTATG
CAAATTGATGGTAATGATATCGAATACATGCTTTTCCAAGGGAAGTACTA
CCACAATCGATGTTTTGTTTGCGATGGCTGTAGGGCTCCATTAATTGGAC
AGAAATTCAAAATCTCACAAGGTCAAAGATTTTGCACTCGATGTCGATAA
AGCTGCAATGATTTATATCTTATATATTAATCAGCAAGCAGTATTCTTAA
ACATATTCTTTATCGAAATTTGTCAAGAACATTTAAATGTAAAGTATTta
ataattttaaagaaaaagttaTATTTTGTAATGTTTCTGTAAATACAAAT
GAAAATCATTACCACATAATTTTTCACCCCTAAaggtcggtctccacttt
cacgcgaaatgggcgacagtttttttcttaaccttttttgcctgaagaaa
aagtttcacgtgaacaaaaaaaaaagttgaaggaagttctacttttttca
tccgttacgtcaatttcaaccaatagaattgcttcatttttcaaccgacc
aatgaccttacaaaaacgtcaaaatatttTCGCTCATGtcacgcgaaagt
ggagaccggccttaagacgCTAGCTACAATTTACTGGCTGAAATGATGAC
GtgtattttcataaaaattgacCAACAGTCTTCCGTAAAGAAGTCATTTT
ATCTACCTTGCTCCAGAGAAGACGAGAAATTTGCAACATCGTGACTCTAT
TTATGATAGCCATTCGCTGCTAACGAGTTGATTTAAAATACACCTCCATG
TCCAAAAACTCCGATCCAAATCGTGAAAAATCTTATCACAATTTCAGCAT
TCCCCATATCCTGTTATTTTCGCATTGTAAATAGAGGTCATAAATCTTCT
ATATACTGTTCAACTCAACTTcgaaggaaaccatttcttgCGGGTTTTTC
CCAACATATTCAACGAATATTGTCAACACGCAGATCATCAAATGAAATAA
AACGCAACTGTCTTCAAGTAACATTCGGTAGTTTTGGTCGTAATGCTGAT
AATGTGATCAAAACAGCTtcc
Run BLAST on NCBI

protein sequence of TCONS_00019285-protein

>TCONS_00019285-protein ID=TCONS_00019285-protein|Name=TCONS_00019285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MNRGMNRRQMEDKCWKCFGMIQGEKVRYQEKQFCTRCYQCDGCKLSLKNK
TCHEEGGQLYCKDCWNIIQQDKCYKCKTLIKVNGQKYRGKLYHEECFTCS
ACNCSLVGLKFHEDEGRYYCEGKCYQDLGAYVCNGCGMQIDGNDIEYMLF
QGKYYHNRCFVCDGCRAPLIGQKFKISQGQRFCTRCR
Run BLAST on NCBI

transcript from alignment at sc0000323:251924..257347-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019285 ID=TCONS_00019285|Name=TCONS_00019285|organism=Clytia hemisphaerica|type=transcript|length=5424bp|location=Sequence derived from alignment at sc0000323:251924..257347- (Clytia hemisphaerica)
AAACGGTTTTTAACGGTGGACATTGTTTATCTTGAGGCTTGTTAAGAAAA
ATAAACTAAATGAACCCGAACCCACATTTTTATTGAGAAAAATGAAGCTT
TTTGATTCGGCTTTGGCTAATATTTTGCTCTGAATATAAAGTATAAGTTC
GTCACTTTTTGGTTTGAAACTCAAAAATTTGTTAAAATGAATCGTGGAAT
GAATCGAAGACAAATGGAAGATGTAAGATTTTCTATTTCTTCCTTTTCCA
TTAAAGATTTCGGGCTTTTTTTTACTACAAAATTTACCCTCGAGTACTTT
GAAACTTATGAACACCAAAAAAAATGAAAATGAAGGTTTATTTTAATTGC
TGAAAATTCTTGAAACGAGACCTCTGTGTTTCAAATCTGTGTTAGATCCT
TCTTACACGAAAGTGACAGAACTGTGAAGTAGTCTTTTTTTGGTGATTTT
TAGCTATTTAGCCCAACTCTGCAGGGCTGCAACATTTTAATTCACAAAGG
GAAATCAGCGAAATTCAAATATTTTAGTGTTCATGTCATGATTTTCAAAA
CCAGTAGAAAGAATCTAGTATTTTTTTTCATTTTCATTTTTGTTCTTCAG
TTCAAAATGTTCAAGCTACAAGCTTTCTTTTTATAACAACCAATATATTT
GGGTTGAGGCTCGGCTATGCTTATTTTTCGCGATTTTCAGCTTAAATATT
ACTTTATTGTTCCTAATTTGCTTACAAAGGGGGTCTAAAATCGGCAATTA
CCATTTGGCTTTAGGTGCATCCGTGCTGCTACTACACTATCTGTTAGACA
TTTTCACTTTAAAAATCTTAAGAAATCAGAATTAAGATTCTGTCCGTTAA
ATGTTGTTCTGTTACAGATTTCGTGTTTATTTTTACATTCAGAAATGTTG
GAAATGTTTTGGAATGATTCAAGGTGAAAAAGTCAGATACCAAGAAAAGC
AATTTTGCACAAGATGCTATCAGTGTGATGGGTGCAAACTGTCTCTAAAA
AGTAAGTGCACTATCCTATTCCATTGCATGCAAAATGACCATCTCCCGAG
CGGGATTCTCCTTAGCCTTTTAATGATGGTGTACTAAAGTTCCTTCGGCT
ATACCTTTACTGATCGTATCTAGCGCCCTTCTAACGCCCAACTACGCCTT
CCACGCTCCACTGGGCAGCAACTTAGCAATTGCTGTTCAGCCCTCCTAAA
CTTTAGTGTTTTTTCGGCAGCGATCGGCGGCGGACCTGCTCAGGACATAG
GTTTGTAAGTATCCTTTTCTTATTTATAGCACGCCCAACGTGGGGCGCCA
ATGTATTGGGGCCTATTGGAGCCTTATCCGCGTGCTGGCCTAGCAGACGA
ATAAGACGCAGTGGGTGAGTGAGTCTAGACTGCGAAAGGAGCGGGCTAAA
GGAACCTAGGGGAGTAGAACCTAATCCTATTTGCAGACAGGAACGGGAGA
CTATGCAGTTACAATAAACTAATATTTAATAATGACAACGCTCTACAATC
GTGCTATAAATAAGAAAAGGCTACTTACAAACCTATGTCCTGAGCAGGTT
CGCCGCCGATCGCCGCCGAAACAACACTAAAGTTTAGGAGNCGGCCGCTT
GGGGGGGCCGGAGGCCCCCCGCCGATCGCCGCCGAAACAACACTAAAGTT
TAGGAGGGCTGGACAGCAATTGCTAAGTTGCTACCCAGTGGAGCGTGGAA
GGCGTAGTTGGGCGTTAGAAGGGTGCTAGATACGATCAGTAAATGTATAG
CCGAAGGAACTTTAGTACAATGGCAAGGCATGCACTTTTGGAAATTTGGG
TTTTTTTTTTCTCGCCATTTTACAATACAACCCGCAAGGAATCCCACCTT
GAAACAGCCGTTTTCATGTGATTGTTCTGGGTGTTAAAGGGCCATTCCCG
AATGGGATAAGAGTGGGTACTAAATTTCGAATACTGTAGAGTGAACAAGA
AACTGTGTTGTTTTTGAAACTTTATTTTTGGCAAAAATAGAAAATCTTTT
ATTCACAAATGACGTTTCACCTTTAGATAAAACTTGTCACGAAGAAGGGG
GTCAATTGTATTGCAAAGATTGTTGGAATATCATACAGCAAGATGTAAGT
TTGACTTACCAACTACTACAAAACAGTCTGTCATACAGCCACCCCTTCTT
ACAGACCTATTGAGAACCCTTCCCAATGGAAAAATTTAACTCCATTTTTT
TCACCACTGAAGATAGTCAAATAAACCGATCCTCATTGCAATATATTATG
TAATTTTTCCCAACCCCACTGATTTTTCTGACCTGAAAACAATGAAATTT
CAATCCCAAAGCAAAGAAAAATATGGGAATATGAATCCCATCAAGTTTCA
TTTCGTTGCCTGTGAGAAGGGGGGGGGGGGGTTTTCAATGTTCATTTAAC
GTCCACAACGTAACATTAGATGAGCATTGCAACAATGTTGTATGCTACAA
TCTTTCAAGAAATATATTAAGAAATCCGGTTATTTTGACGTTTTTCGAGA
TTTAAAGTTCGGGCGAAAAAGCCGATTTTGGGCTCTCTCTTTAATTTAAT
CGAATATTTCAATTTGAGACGGGTAGGCAGACTTCCAGGCTATATTCGGA
GCCTTACTGGACCATTTTTGAACTTTTGGATCCTCAGATCCTAAGGTCCT
AAGTGTTAAGTCTAGCGTCAAAACTCAGAGTTAAAACACTACCCATCGAA
CCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACTTCCTGGGG
AATTTCCCATTTGTCTCAAATATTTCTTGATGGATTGTAGCTGGGAAATA
CCGTTAAAAATTATGTTTCAGATAATAATTTCTATGTCTTTTCATGTTAA
TATTATAAGTCATCAATTGAAAAAATAAAATAAAATAAAACACAAATAAT
CACATAAAAATAAACGCGTACCTCACCGCAAGTTTTCGAGTGAATTTATA
CGATGAAAGGCTATAAGTATAAGAAACACTCATTTGTAAGTAGTGGAAAG
ATCACGGCTTCCTCTTTAAAGTCGACCACAAAGCCACAGTGATGAATTAG
GCTCTTCCAGAAAAAGTTCGTACATGGGGGGTGGAGGATATATCATTTTT
GAAGCTCGACCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCCCCCCGTACAAGAGCA
AAATTACCCCCCGGACAAGGCAATATTTTACCCCCCGGACAATATATCCT
CCGCCCCCCCCGTACGAACATTTTCTGGAAGAGCCCATTTGATACTTTCT
CCAGTGAATGTTCGGACTCTTATCCTAACAATCAATTTCTTTTAGAAATG
TTACAAATGTAAAACACTGATTAAAGTAAATGGACAAAAGTACCGAGGAA
AACTTTACCATGAAGAATGTTTCACTTGTAGCGCATGTAACTGCTCCCTT
GTAGGTAAGAAAAAACCTTAAAAAAGGTTAAGACAGTGAAGGGGTTAGGA
AAGCTTGAATGCACTAACTTTAGTAAAAACCTCAAAAATTCTTCCTTGTG
AAGATAAGTATATCCCTGTGCTACAGTGGCAGACCAAAGAGTCGTTAAAT
GCATACGGTTTGTTTTACGTCCCTTTAAATTCCACTTCAGTGGTAACAGG
AGAAAAGGACAACGGTGGTTCTTTTTTATATTCTTCTGGAGCCCGTTGTT
CTTCTGGAGCCCGTTGAAAGCTTTGAGTGAGGGGGGCATACATAGTTTGA
TTCGCAAACCTCTATAGATATATCTCCTATATAATGGGCTTTTCCAGAAA
AAAACCGTGCACCCCCTGTTGAGGAGGTCCAACCTTTTGTGACCTACCCC
CTTGGAATTCCAGGCAATTTTAGGATCATACCCCTCTGGAATATAGAATT
TTTTACAAATTTTCAATCATTCCGCTTATTTTTGACGGATTTTCGTCTAC
CCTTATGGAATTTCACGGCATTTCAAACCTTACCCCCTTGGAACGGAAAT
GGACCTCCTCAACAGGGGGTGCACGATTTTTTTCTGGAAAAGCCCAATAT
AAGAAACTTTTTTCGCTAGAGGATGAGCAGAAGCCTAGGGCATACATGGC
TTTTTCATTTTCAATTTAACCGAGAAAATACTACTTGGGCGTATGACAAA
CAGACTATTTTTTGAAAAAAAAGTCACTGCTATGGGCAACGGATGCCAGA
GACAGGGGTGTTTTGTAAGGTATCGTCAAAGCTGATATTAATTAAATTCT
TCACAAACCAGGTTTAAAATTTCACGAGGACGAAGGTCGTTACTACTGCG
AAGGTAAATGTTATCAAGACCTTGGTGCTTATGTTTGCAATGGTTGTGGT
ATGCAAATTGATGGTAATGATATCGAATACATGCTTTTCCAAGGGAAGTA
CTACCACAATCGATGTTTTGTTTGCGATGGCTGTAGGGCTCCATTAATTG
GACAGAAATTCAAAATCTCACAAGGTCAAAGATTTTGCACTCGATGTCGA
TAAAGCTGCAATGATTTATATCTTATATATTAATCAGCAAGCAGTATTCT
TAAACATATTCTTTATCGAAATTTGTCAAGAACATTTAAATGTAAAGTAT
TTAATAATTTTAAAGAAAAAGTTATATTTTGTAATGTTTCTGTAAATACA
AATGAAAATCATTACCACATAATTTTTCACCCCTAAAGGTCGGTCTCCAC
TTTCACGCGAAATGGGCGACAGTTTTTTTCTTAACCTTTTTTGCCTGAAG
AAAAAGTTTCACGTGAACAAAAAAAAAAGTTGAAGGAAGTTCTACTTTTT
TCATCCGTTACGTCAATTTCAACCAATAGAATTGCTTCATTTTTCAACCG
ACCAATGACCTTACAAAAACGTCAAAATATTTTCGCTCATGTCACGCGAA
AGTGGAGACCGGCCTTAAGACGCTAGCTACAATTTACTGGCTGAAATGAT
GACGTGTATTTTCATAAAAATTGACCAACAGTCTTCCGTAAAGAAGTCAT
TTTATCTACCTTGCTCCAGAGAAGACGAGAAATTTGCAACATCGTGACTC
TATTTATGATAGCCATTCGCTGCTAACGAGTTGATTTAAAATACACCTCC
ATGTCCAAAAACTCCGATCCAAATCGTGAAAAATCTTATCACAATTTCAG
CATTCCCCATATCCTGTTATTTTCGCATTGTAAATAGAGGTCATAAATCT
TCTATATACTGTTCAACTCAACTTCGAAGGAAACCATTTCTTGCGGGTTT
TTCCCAACATATTCAACGAATATTGTCAACACGCAGATCATCAAATGAAA
TAAAACGCAACTGTCTTCAAGTAACATTCGGTAGTTTTGGTCGTAATGCT
GATAATGTGATCAAAACAGCTTCC

Coding sequence (CDS) from alignment at sc0000323:251924..257347-

>TCONS_00019285 ID=TCONS_00019285|Name=TCONS_00019285|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000323:251924..257347- (Clytia hemisphaerica)
GTTTAAAATTTCACGAGGACGAAGGTCGTTACTACTGCGAAGGTAAATGT
TATCAAGACCTTGGTGCTTATGTTTGCAATGGTTGTGGTATGCAAATTGA
TGGTAATGATATCGAATACATGCTTTTCCAAGGGAAGTACTACCACAATC
GATGTTTTGTTTGCGATGGCTGTAGGGCTCCATTAATTGGACAGAAATTC
AAAATCTCACAAGGTCAAAGATTTTGCACTCGATGTCGATAAAAATGTTA
CAAATGTAAAACACTGATTAAAGTAAATGGACAAAAGTACCGAGGAAAAC
TTTACCATGAAGAATGTTTCACTTGTAGCGCATGTAACTGCTCCCTTGTA
GATAAAACTTGTCACGAAGAAGGGGGTCAATTGTATTGCAAAGATTGTTG
GAATATCATACAGCAAGATAAATGTTGGAAATGTTTTGGAATGATTCAAG
GTGAAAAAGTCAGATACCAAGAAAAGCAATTTTGCACAAGATGCTATCAG
TGTGATGGGTGCAAACTGTCTCTAAAAAATGAATCGTGGAATGAATCGAA
GACAAATGGAAGATGTTTAAAATTTCACGAGGACGAAGGTCGTTACTACT
GCGAAGGTAAATGTTATCAAGACCTTGGTGCTTATGTTTGCAATGGTTGT
GGTATGCAAATTGATGGTAATGATATCGAATACATGCTTTTCCAAGGGAA
GTACTACCACAATCGATGTTTTGTTTGCGATGGCTGTAGGGCTCCATTAA
TTGGACAGAAATTCAAAATCTCACAAGGTCAAAGATTTTGCACTCGATGT
CGATAAAAATGTTACAAATGTAAAACACTGATTAAAGTAAATGGACAAAA
GTACCGAGGAAAACTTTACCATGAAGAATGTTTCACTTGTAGCGCATGTA
ACTGCTCCCTTGTAGATAAAACTTGTCACGAAGAAGGGGGTCAATTGTAT
TGCAAAGATTGTTGGAATATCATACAGCAAGATAAATGTTGGAAATGTTT
TGGAATGATTCAAGGTGAAAAAGTCAGATACCAAGAAAAGCAATTTTGCA
CAAGATGCTATCAGTGTGATGGGTGCAAACTGTCTCTAAAAAATGAATCG
TGGAATGAATCGAAGACAAATGGAAGATGTTTAAAATTTCACGAGGACGA
AGGTCGTTACTACTGCGAAGGTAAATGTTATCAAGACCTTGGTGCTTATG
TTTGCAATGGTTGTGGTATGCAAATTGATGGTAATGATATCGAATACATG
CTTTTCCAAGGGAAGTACTACCACAATCGATGTTTTGTTTGCGATGGCTG
TAGGGCTCCATTAATTGGACAGAAATTCAAAATCTCACAAGGTCAAAGAT
TTTGCACTCGATGTCGATAAAAATGTTACAAATGTAAAACACTGATTAAA
GTAAATGGACAAAAGTACCGAGGAAAACTTTACCATGAAGAATGTTTCAC
TTGTAGCGCATGTAACTGCTCCCTTGTAGATAAAACTTGTCACGAAGAAG
GGGGTCAATTGTATTGCAAAGATTGTTGGAATATCATACAGCAAGATAAA
TGTTGGAAATGTTTTGGAATGATTCAAGGTGAAAAAGTCAGATACCAAGA
AAAGCAATTTTGCACAAGATGCTATCAGTGTGATGGGTGCAAACTGTCTC
TAAAAAATGAATCGTGGAATGAATCGAAGACAAATGGAAGATGTTTAAAA
TTTCACGAGGACGAAGGTCGTTACTACTGCGAAGGTAAATGTTATCAAGA
CCTTGGTGCTTATGTTTGCAATGGTTGTGGTATGCAAATTGATGGTAATG
ATATCGAATACATGCTTTTCCAAGGGAAGTACTACCACAATCGATGTTTT
GTTTGCGATGGCTGTAGGGCTCCATTAATTGGACAGAAATTCAAAATCTC
ACAAGGTCAAAGATTTTGCACTCGATGTCGATAAAAATGTTACAAATGTA
AAACACTGATTAAAGTAAATGGACAAAAGTACCGAGGAAAACTTTACCAT
GAAGAATGTTTCACTTGTAGCGCATGTAACTGCTCCCTTGTAGATAAAAC
TTGTCACGAAGAAGGGGGTCAATTGTATTGCAAAGATTGTTGGAATATCA
TACAGCAAGATAAATGTTGGAAATGTTTTGGAATGATTCAAGGTGAAAAA
GTCAGATACCAAGAAAAGCAATTTTGCACAAGATGCTATCAGTGTGATGG
GTGCAAACTGTCTCTAAAAAATGAATCGTGGAATGAATCGAAGACAAATG
GAAGATGTTTAAAATTTCACGAGGACGAAGGTCGTTACTACTGCGAAGGT
AAATGTTATCAAGACCTTGGTGCTTATGTTTGCAATGGTTGTGGTATGCA
AATTGATGGTAATGATATCGAATACATGCTTTTCCAAGGGAAGTACTACC
ACAATCGATGTTTTGTTTGCGATGGCTGTAGGGCTCCATTAATTGGACAG
AAATTCAAAATCTCACAAGGTCAAAGATTTTGCACTCGATGTCGATAAAA
ATGTTACAAATGTAAAACACTGATTAAAGTAAATGGACAAAAGTACCGAG
GAAAACTTTACCATGAAGAATGTTTCACTTGTAGCGCATGTAACTGCTCC
CTTGTAGATAAAACTTGTCACGAAGAAGGGGGTCAATTGTATTGCAAAGA
TTGTTGGAATATCATACAGCAAGATAAATGTTGGAAATGTTTTGGAATGA
TTCAAGGTGAAAAAGTCAGATACCAAGAAAAGCAATTTTGCACAAGATGC
TATCAGTGTGATGGGTGCAAACTGTCTCTAAAAAATGAATCGTGGAATGA
ATCGAAGACAAATGGAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010825XLOC_010825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019285-exon-sc0000323-1575043694:257126..257347TCONS_00019285-exon-sc0000323-1575043694:257126..257347Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1575043694:256347..256455TCONS_00019285-exon-sc0000323-1575043694:256347..256455Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1575043694:255254..255321TCONS_00019285-exon-sc0000323-1575043694:255254..255321Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1575043694:253844..253952TCONS_00019285-exon-sc0000323-1575043694:253844..253952Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1575043694:251924..253036TCONS_00019285-exon-sc0000323-1575043694:251924..253036Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1510915933:257126..257347TCONS_00019285-exon-sc0000323-1510915933:257126..257347Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1510915933:256347..256455TCONS_00019285-exon-sc0000323-1510915933:256347..256455Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1510915933:255254..255321TCONS_00019285-exon-sc0000323-1510915933:255254..255321Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1510915933:253844..253952TCONS_00019285-exon-sc0000323-1510915933:253844..253952Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1510915933:251924..253036TCONS_00019285-exon-sc0000323-1510915933:251924..253036Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1491911889:257126..257347TCONS_00019285-exon-sc0000323-1491911889:257126..257347Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1491911889:256347..256455TCONS_00019285-exon-sc0000323-1491911889:256347..256455Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1491911889:255254..255321TCONS_00019285-exon-sc0000323-1491911889:255254..255321Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1491911889:253844..253952TCONS_00019285-exon-sc0000323-1491911889:253844..253952Clytia hemisphaericaexon
TCONS_00019285-exon-sc0000323-1491911889:251924..253036TCONS_00019285-exon-sc0000323-1491911889:251924..253036Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019285-proteinTCONS_00019285-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:251924..257347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0462375	0.141482	0.0493212	0	0	0.0544055	0.135405	0.407872	1.84224	0.381101	1.11685	3.07448	36.3843	27.5408	3.77748	4.19334	2.49045	3.52269	45.3218	42.4154	3.84802	3.48548	0.709633	0.415117	0.5082	0.252863	0.0890701	0	0.0637232	0.0624352
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Blast
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BLAST of TCONS_00019285 vs. Swiss-Prot (Human)
Match: FHL3 (Four and a half LIM domains protein 3 OS=Homo sapiens GN=FHL3 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 3.577e-17
Identity = 48/168 (28.57%), Postives = 77/168 (45.83%), Query Frame = 1 
Query:  244 MIQGEKVRYQEKQFCTRCYQCDGCKLSLKNKTCHEEGGQLYCKDCWNIIQQDKCYKCKTLIKVNGQKYRGKLYHEECFTCSACNCSLVGLKFHEDEGRYYCEGKCYQDLGAYVCNGCGMQIDG-NDIEYMLFQGKYYHNRCFVCDGCRAPLIGQKFKISQGQRFCTRC 744
            M    K+ Y  + +   C+ C GC+  L +++   + G  YC  C+      +C +C   +   G  YR + +H EC  C+ C   L G +F   +   YC   C+ +L A  C+ C   I G    +Y+ F+ +++H+ CF C  C   L+GQ F     Q  C  C
Sbjct:  109 MPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVA-CFGELFAPKCSSCKRPIVGLGGGKYVSFEDRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 275

HSP 2 Score: 79.337 bits (194), Expect = 2.621e-16
Identity = 51/181 (28.18%), Postives = 84/181 (46.41%), Query Frame = 1 
Query:  214 MEDKCWKCFGMI--QGEKVRYQEKQFCTRCYQCDGCKLSLKNKTCHEEGGQLYCKDCWNIIQQDKCYKCKTLIKVNGQK--YRGKLYHEECFTCSACNCSLVGLKFHEDEGRYYCEGKCYQDLGAYVCNGCGMQIDGNDIEYMLFQGKYYHNRCFVCDGCRAPLIGQKFKISQGQRFCTRC 744
              + C +C  +I     ++ Y+++ F   C++C  C+ SL ++    +  +L C DC+      +C  C   +    +K  Y G+ +HE CF CS C   L    F  D+G +YC   CY++  A  C  C   +    + Y   + + +H  C VC GC+ PL GQ+F       +C  C
Sbjct:   36 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCV-PCYENKFAPRCARCSKTLTQGGVTY---RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVAC 212
The following BLAST results are available for this feature:
BLAST of TCONS_00019285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FHL33.577e-1728.57Four and a half LIM domains protein 3 OS=Homo sapi... [more]
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