TCONS_00019250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019250
Unique NameTCONS_00019250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019250 ID=TCONS_00019250|Name=TCONS_00019250|organism=Clytia hemisphaerica|type=transcript|length=862bp
TTGAGAGCCAGTAGACAAGCTACACCCTCTCGAGTTTCAACCGCCCAAAA
CGCCCTCCCTTCTTCATCAGCTCCACTGTTGGCGCCCATGTCAACCGCCC
GCCAGGGAATCCCCCAAACGTCTATTGGATTGGATCAAGCTTTCCTGCGG
ATTCCCCAAACTACAACAACAGCCGTCCTTCCGCACATCGTTTCGTCTTC
CCTTTATTGGGAACCCAACAGAATCTTGATTTACAATCACATTTACAATC
CACTCTCCATCCTCGACGTCCAACAATCAACCAAAGCGAGATCCTGCTAC
GTCCGACAAGAACGAATGATCCAACTCGTGGTAAGCCTCTTCGTATAGTT
GATTTTGTTTCGAGGCTACGTCCTTCAGAAGAAGAAAAAGTGTTTGCAAG
TGACAATAACTATGTTCTAAAACTTTCTCTACAAGATACAAAACCGAAAC
TGTAGTCTGTCACAGTAGAACAATTTAATATAGCTAACCTTAGaattttt
tatgaacttttgttttcaactaAGCTTTCCTCCATGCAGGAGATTAGGGA
ATACCTTGCCTACTCTGTGAAGGTTCTTGAACTGGCGATTAAATACTCGT
GGCAGTCTGTGCTGCATTATGATGATGAATTTCGAGTTTTGCAGCACACA
TATGGCTACCCATGGAGTACTGATCATAGTCACCAACACGAAGTTGTTCT
TATTCCGCGCTGGGCTGCGAAATCTACTGCGCCAGGGGCTGGGTATAACT
CATCGAATAAACCCGGCGAGTCGGGCAACTTGAAATCCTTCATTGTTGCA
CGCCTTCCAAACGGGGAAGAAATATGCAGGTTGTACAACAGTAAAAAAGG
TTGTCAAAGGTC
Run BLAST on NCBI

protein sequence of TCONS_00019250-protein

>TCONS_00019250-protein ID=TCONS_00019250-protein|Name=TCONS_00019250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
LRASRQATPSRVSTAQNALPSSSAPLLAPMSTARQGIPQTSIGLDQAFLR
IPQTTTTAVLPHIVSSSLYWEPNRILIYNHIYNPLSILDVQQSTKARSCY
VRQERMIQLVVSLFV
Run BLAST on NCBI

transcript from alignment at sc0000321:101467..102328

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019250 ID=TCONS_00019250|Name=TCONS_00019250|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at sc0000321:101467..102328 (Clytia hemisphaerica)
GACCTTTGACAACCTTTTTTACTGTTGTACAACCTGCATATTTCTTCCCC
GTTTGGAAGGCGTGCAACAATGAAGGATTTCAAGTTGCCCGACTCGCCGG
GTTTATTCGATGAGTTATACCCAGCCCCTGGCGCAGTAGATTTCGCAGCC
CAGCGCGGAATAAGAACAACTTCGTGTTGGTGACTATGATCAGTACTCCA
TGGGTAGCCATATGTGTGCTGCAAAACTCGAAATTCATCATCATAATGCA
GCACAGACTGCCACGAGTATTTAATCGCCAGTTCAAGAACCTTCACAGAG
TAGGCAAGGTATTCCCTAATCTCCTGCATGGAGGAAAGCTtagttgaaaa
caaaagttcataaaaaattCTAAGGTTAGCTATATTAAATTGTTCTACTG
TGACAGACTACAGTTTCGGTTTTGTATCTTGTAGAGAAAGTTTTAGAACA
TAGTTATTGTCACTTGCAAACACTTTTTCTTCTTCTGAAGGACGTAGCCT
CGAAACAAAATCAACTATACGAAGAGGCTTACCACGAGTTGGATCATTCG
TTCTTGTCGGACGTAGCAGGATCTCGCTTTGGTTGATTGTTGGACGTCGA
GGATGGAGAGTGGATTGTAAATGTGATTGTAAATCAAGATTCTGTTGGGT
TCCCAATAAAGGGAAGACGAAACGATGTGCGGAAGGACGGCTGTTGTTGT
AGTTTGGGGAATCCGCAGGAAAGCTTGATCCAATCCAATAGACGTTTGGG
GGATTCCCTGGCGGGCGGTTGACATGGGCGCCAACAGTGGAGCTGATGAA
GAAGGGAGGGCGTTTTGGGCGGTTGAAACTCGAGAGGGTGTAGCTTGTCT
ACTGGCTCTCAA

Coding sequence (CDS) from alignment at sc0000321:101467..102328

>TCONS_00019250 ID=TCONS_00019250|Name=TCONS_00019250|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000321:101467..102328 (Clytia hemisphaerica)
CTATACGAAGAGGCTTACCACGAGTTGGATCATTCGTTCTTGTCGGACGT
AGCAGGATCTCGCTTTGGTTGATTGTTGGACGTCGAGGATGGAGAGTGGA
TTGTAAATGTGATTGTAAATCAAGATTCTGTTGGGTTCCCAATAAAGGGA
AGACGAAACGATGTGCGGAAGGACGGCTGTTGTTGTAGTTTGGGGAATCC
GCAGGAAAGCTTGATCCAATCCAATAGACGTTTGGGGGATTCCCTGGCGG
GCGGTTGACATGGGCGCCAACAGTGGAGCTGATGAAGAAGGGAGGGCGTT
TTGGGCGGTTGAAACTCGAGAGGGTGTAGCTTGTCTACTGGCTCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010803XLOC_010803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019250-exon-sc0000321-1491911889:101467..102328TCONS_00019250-exon-sc0000321-1491911889:101467..102328Clytia hemisphaericaexon
TCONS_00019250-exon-sc0000321-1510915933:101467..102328TCONS_00019250-exon-sc0000321-1510915933:101467..102328Clytia hemisphaericaexon
TCONS_00019250-exon-sc0000321-1575043694:101467..102328TCONS_00019250-exon-sc0000321-1575043694:101467..102328Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019250-proteinTCONS_00019250-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:101467..102328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.391716	0.280886	0.165613	2.80759	4.04257	2.08756	2.60325	1.24186	1.10459	1.25721	1.33899	1.12906	1.29437	0.0456192	0.145981	0.0668126	0.622871	0.23531	0.140109	0.405951	0.299515	0	0.253399	1.1479	1.18348	0.151548	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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