TCONS_00019242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019242
Unique NameTCONS_00019242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019242 ID=TCONS_00019242|Name=TCONS_00019242|organism=Clytia hemisphaerica|type=transcript|length=2426bp
tacaattgaatcaattagATTATGATTAAAACCACCAAAATATTCCAATA
CTAACTAACTGCAACAAAACTGTGCTGCTACAAGAATAAAACATTTTGGT
TTTATAGTGATTTTATATGCAAGTCTTCCTGACTAAAATTGACTCTACTT
TTTTAGTGAAATATGGAATAAAAATAGATGAGTACTGAATTCAATATGTC
CCTGATCAAATTGAAAGGATGAAAAAGAACAATGAAAAAGATAAGAATCA
GTATATATGGCGTCTTTTCTGAAAAAGACCTTGAAACAAAAGGTTCAAAA
GTGGGCCATTTTTGGATTGGGATTTTACCTAGTTGGTCTTCAAGGCTTTC
ATGCAGCAGGCCAGTTCTTTGGAAACAGAAAAAATTGGCCTGTCACTGTT
GCAGCTTTTGGGGCATTTGGGTTTCTGTTGTATAATCAGATGAAAGCAAT
CCTTGTGACTTTGGGCTGTTTTGTCTTGGTCCTGGTTGTTTTTGTCATTG
CAGTTGGACTAATGTTACCAGAGCAAGGCTATGATGGAGAATTTCATTGG
GACCCTAGCGACGAGGAtcttgatgattttgatgaaaattagaTTCTCTA
TTTACTAGTAAATACATCAACCAGTTTTATTGTGGAGATTTCTGAAAAGC
TAAAATATATACTGATTCACAATTGAAAATAAGAATAGAAATGTTAGCTT
AAAATTGCTATGGTAACATTGAATTACTCTTTAATAGAGAATTTAGCAAG
GCTTGGGCAGCGAcattttgatttacatttaaTTTTATAACAGAAGCTGT
ATACAAGGAGAGACTTTTGGAGACTTCTATATCATCACTGCAACACCTTA
ATGTAAATTTTCTTGTATATGCTGGGAGGCTCAGCCACACTACAGTAGGA
GGATCAGCCAGATACAATAATGTTCAATACAGTGATAACAACTTACTACC
CTTTTAATGTACATATAAAATATGTAATTTTTACAGTAAAACTCTCCATT
TGATTATTAACACTCTAGAGCTTCTAATAAAGTTACCTTACCCATTAAAA
TTAAGTGCCAGTtcctaaattttgaatttccgcCCCAAATAACAATATTT
TGTTGCTTTCAGGGAAGCAGGCTTATTTAATCACTTTGTCCAAAACCCAG
TACATAACTTATAAGAACCTGGCAATCTTATATTATTGAGCCCTTGCTAG
TCTTGCTGGTCTTAATCCAGCTCAATCaataaaaattcatttattttgaa
gaaatcaCATTGTAGGTACACCAAAAAATGTTTAGAGAAAAGATTTCCAT
TTTGAGTTTCCAATTTtggattttgttgtttttgccaCTAGTGGAATGCT
CTCCAGGAGATCGTGATCCACACTTTCAATTATGCTCTAGAAAATGTATT
GTAAATTGCATCAATCAGCAGCACAGCTTTCTGTCATGGGGATGTAAAGG
AGAATGTGAATATGATTGTATGTTTAGAATAACTGATGAAAGAACAAAAC
TTGGCCTTGATATACTTCAATACTatggaaaatggccattttatAGGCTT
TTCATTATTCAAGAACCAGCATCGTTCATATTTTCTGTCCTCAATCTGGT
GTCTCAAATTATTGGATGGATTCactattcaaaaaatgttgacaGCAGCT
TCAAGTTTTATGGACTTGCCAAAGTGCAATCTTTTATCAATAGTGTTGCA
TGGACATGTGCTATTATATTTCATACACGAGACACTTATTGGACTGAAAA
AATGGATTATTTTAGTGCAGCCGCAGTCATTGGGGTCTCACTTTTCACCT
GTTTTTCACACATCATTGGAGATATGGAATCATTTGCAACAAAATTTATT
GGAGCACTAATATTGTCTGTTTTCTCTTTCCACATTTACTATATGGCTTT
TATTCATTTTGATTATGGATATAATATGAAATTCCTTGTATCAAATGGTA
TTATTAATATCACTGTATGGTTTATATGGTCTTggataaatagaaaaaaa
cgacCAGTTGGCAAATGTGTATTGGTAATGGGAGGCACCTTACTACTAGC
ATCTTTAGAAGTTTTCGATTTTCCTCCTATATTTTGGATACTGGATGGAC
ATGCACTATGGCACTTTGGAACTATTCCTATACCTTTTCTATGGTTCAGT
TTTTTGACTGAGAATGCTTTATTTGAAACATCAAAATCTTCCTtagattg
attgaaaaattgtttttttagaattagTTTTCTTCTTAGTTTGTCATCAT
ACTGTACAAATTATAACGTGTcactaaattaattttttgaaagtacAGCC
TTGGCAAAAGATAAAAGTCAAGAATAATCAAAGTTTTAATATCAATCTCA
AAGACAAAATTGattctgaatatttttttaactttgataATATTATTAAT
CCTTTACTTTTCTACTTAACTATTAG
Run BLAST on NCBI

protein sequence of TCONS_00019242-protein

>TCONS_00019242-protein ID=TCONS_00019242-protein|Name=TCONS_00019242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MFREKISILSFQFWILLFLPLVECSPGDRDPHFQLCSRKCIVNCINQQHS
FLSWGCKGECEYDCMFRITDERTKLGLDILQYYGKWPFYRLFIIQEPASF
IFSVLNLVSQIIGWIHYSKNVDSSFKFYGLAKVQSFINSVAWTCAIIFHT
RDTYWTEKMDYFSAAAVIGVSLFTCFSHIIGDMESFATKFIGALILSVFS
FHIYYMAFIHFDYGYNMKFLVSNGIINITVWFIWSWINRKKRPVGKCVLV
MGGTLLLASLEVFDFPPIFWILDGHALWHFGTIPIPFLWFSFLTENALFE
TSKSSLD
Run BLAST on NCBI

transcript from alignment at sc0000321:90337..93716-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019242 ID=TCONS_00019242|Name=TCONS_00019242|organism=Clytia hemisphaerica|type=transcript|length=3380bp|location=Sequence derived from alignment at sc0000321:90337..93716- (Clytia hemisphaerica)
TACAATTGAATCAATTAGATTATGATTAAAACCACCAAAATATTCCAATA
CTAACTAACTGCAACAAAACTGTGCTGCTACAAGAATAAAACATTTTGGT
TTTATAGTGATTTTATATGCAAGTCTTCCTGACTAAAATTGACTCTACTT
TTTTAGTGAAATATGGAATAAAAATAGATGAGTACTGAATTCAATATGTC
CCTGATCAAATTGAAAGGATGAAAAAGAACAATGAAAAAGATAAGAATCA
GTATATATGGCGTCTTTTCTGAAAAAGACCTTGAAACAAAAGGTTCAAAA
GTGGGCCATTTTTGGATTGGGATTTTACCTAGTTGGTCTTCAAGGCTTTC
ATGCAGCAGGCCAGTTCTTTGGAAACAGAAAAAATTGGCCTGTCACTGTT
GCAGCTTTTGGGGCATTTGGGTTTCTGTTGTATAATCAGGTATGTATGGA
GAACTTTATTCTTTTTGGATTTGAGACAATTCACAGCCTACTAAAATTAA
AACTCAGGAAAATAACTGTTAAACAAATTGATAAGAATTAACAAAATGAC
CAAACAGCTTTAAATTCTGCTCCAAAAAACTTAGTAGTCTGTACTATACC
TAAAATGGATTAATTTTCGCGTGAACTGATTTTTGCGAGACGAGAATTAA
AAGATTTTGCTGATTAATTGTCACGATTCAAGGGTTTTCAAAATTTTTGC
GTGGATTAAATTTTGCAAAAATGGCCAAAATTCTCAAAAAACAGAATTAA
TTAACACAAAAATTAATCCACTTAGGTAATCGAGGGGGGAAAGATATAGC
TTAAAGCAATAACTGGTTGGGAATAATGTTGTTCAGATTGATGTAATGTA
AGCTTTGTAGAATCTTCTAAAACATTGAAAATGAAGATGGAAATGAAAAA
AAAAAGAATGAAGATTTTTCAGCTCAACCAAAAACTTTTATTTTATACTT
TTCTGAAAATTTGAAACCTCTGAAAAAAAGTCCACATGTGCAATAAATTG
CTAAAAATGGTCGAAATGGACCTTTAACAAGAAAATATAACTTTGAAAAG
TTGTATGAAAAATCTGAATAACATGTTTGAAATCAGTGGTTCAAAATTTT
AGAAAAGTATTATAAATTTATTTGGCAGGGTAGAAAAATTTTTCATACGG
TCATACAAAGTACAAATTGGTACTTGTTGCCTCTCTGCTTAATTCTGAAT
ATAGATAATATTATAGGTTAGTGGAGTAATCCATTGAGAAAGAGTGGTGC
CTTCCCTACCTTTTGGAATATGTATATTGAAAGAAGGGCTTTTGGGTCCC
CTTGATTGATTCATAATTGCTTGTCTTATTCTGCAGGCAAGAATTTTAAA
CTAGTTTCTAAGATTATTGGTTTACTGTCTGATTTCTTACCAGATGAAAG
CAATCCTTGTGACTTTGGGCTGTTTTGTCTTGGTCCTGGTTGTTTTTGTC
ATTGCAGTTGGACTAATGTTACCAGAGCAAGGCTATGATGGAGAATTTCA
TTGGGACCCTAGCGACGAGGATCTTGATGATTTTGATGAAAATTAGATTC
TCTATTTACTAGTAAATACATCAACCAGTTTTATTGTGGAGATTTCTGAA
AAGCTAAAATATATACTGATTCACAATTGAAAATAAGAATAGAAATGTTA
GCTTAAAATTGCTATGGTAACATTGAATTACTCTTTAATAGAGAATTTAG
CAAGGCTTGGGCAGCGACATTTTGATTTACATTTAATTTTATAACAGAAG
CTGTATACAAGGAGAGACTTTTGGAGACTTCTATATCATCACTGCAACAC
CTTAATGTAAATTTTCTTGTATATGCTGGGAGGCTCAGCCACACTACAGT
AGGAGGATCAGCCAGATACAATAATGTTCAATACAGTGATAACAACTTAC
TACCCTTTTAATGTACATATAAAATATGTAATTTTTACAGTAAAACTCTC
CATTTGATTATTAACACTCTAGAGCTTCTAATAAAGTTACCTTACCCATT
AAAATTAAGTGCCAGTTCCTAAATTTTGAATTTCCGCCCCAAATAACAAT
ATTTTGTTGCTTTCAGGGAAGCAGGCTTATTTAATCACTTTGTCCAAAAC
CCAGTACATAACTTATAAGAACCTGGCAATCTTATATTATTGAGCCCTTG
CTAGTCTTGCTGGTCTTAATCCAGCTCAATCAATAAAAATTCATTTATTT
TGAAGAAATCACATTGTAGGTACACCAAAAAATGTTTAGAGAAAAGATTT
CCATTTTGAGTTTCCAATTTTGGATTTTGTTGTTTTTGCCACTAGTGGAA
TGCTCTCCAGGAGATCGTGATCCACACTTTCAATTATGCTCTAGAAAATG
TATTGTAAATTGCATCAATCAGCAGCACAGCTTTCTGTCATGGGGATGTA
AAGGAGAATGTGAATATGATTGTATGTTTAGAATAACTGATGAAAGAACA
AAACTTGGCCTTGATATACTTCAATACTATGGAAAATGGCCATTTTATAG
GCTTTTCATTATTCAAGAACCAGCATCGTTCATATTTTCTGTCCTCAATC
TGGTGTCTCAAATTATTGGATGGATTCACTATTCAAAAAATGTTGACAGC
AGCTTCAAGTTTTATGGACTTGCCAAAGTGCAATCTTTTATCAATAGTGT
TGCATGGACATGTGCTATTATATTTCATACACGAGACACTTATTGGACTG
AAAAAATGGATTATTTTAGTGCAGCCGCAGTCATTGGGGTCTCACTTTTC
ACCTGTTTTTCACACATCATTGGAGATATGGAATCATTTGCAACAAAATT
TATTGGAGCACTAATATTGTCTGTTTTCTCTTTCCACATTTACTATATGG
CTTTTATTCATTTTGATTATGGATATAATATGAAATTCCTTGTATCAAAT
GGTATTATTAATATCACTGTATGGTTTATATGGTCTTGGATAAATAGAAA
AAAACGACCAGTTGGCAAATGTGTATTGGTAATGGGAGGCACCTTACTAC
TAGCATCTTTAGAAGTTTTCGATTTTCCTCCTATATTTTGGATACTGGAT
GGACATGCACTATGGCACTTTGGAACTATTCCTATACCTTTTCTATGGTT
CAGTTTTTTGACTGAGAATGCTTTATTTGAAACATCAAAATCTTCCTTAG
ATTGATTGAAAAATTGTTTTTTTAGAATTAGTTTTCTTCTTAGTTTGTCA
TCATACTGTACAAATTATAACGTGTCACTAAATTAATTTTTTGAAAGTAC
AGCCTTGGCAAAAGATAAAAGTCAAGAATAATCAAAGTTTTAATATCAAT
CTCAAAGACAAAATTGATTCTGAATATTTTTTTAACTTTGATAATATTAT
TAATCCTTTACTTTTCTACTTAACTATTAG

Coding sequence (CDS) from alignment at sc0000321:90337..93716-

>TCONS_00019242 ID=TCONS_00019242|Name=TCONS_00019242|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000321:90337..93716- (Clytia hemisphaerica)
ATGTTTAGAGAAAAGATTTCCATTTTGAGTTTCCAATTTTGGATTTTGTT
GTTTTTGCCACTAGTGGAATGCTCTCCAGGAGATCGTGATCCACACTTTC
AATTATGCTCTAGAAAATGTATTGTAAATTGCATCAATCAGCAGCACAGC
TTTCTGTCATGGGGATGTAAAGGAGAATGTGAATATGATTGTATGTTTAG
AATAACTGATGAAAGAACAAAACTTGGCCTTGATATACTTCAATACTATG
GAAAATGGCCATTTTATAGGCTTTTCATTATTCAAGAACCAGCATCGTTC
ATATTTTCTGTCCTCAATCTGGTGTCTCAAATTATTGGATGGATTCACTA
TTCAAAAAATGTTGACAGCAGCTTCAAGTTTTATGGACTTGCCAAAGTGC
AATCTTTTATCAATAGTGTTGCATGGACATGTGCTATTATATTTCATACA
CGAGACACTTATTGGACTGAAAAAATGGATTATTTTAGTGCAGCCGCAGT
CATTGGGGTCTCACTTTTCACCTGTTTTTCACACATCATTGGAGATATGG
AATCATTTGCAACAAAATTTATTGGAGCACTAATATTGTCTGTTTTCTCT
TTCCACATTTACTATATGGCTTTTATTCATTTTGATTATGGATATAATAT
GAAATTCCTTGTATCAAATGGTATTATTAATATCACTGTATGGTTTATAT
GGTCTTGGATAAATAGAAAAAAACGACCAGTTGGCAAATGTGTATTGGTA
ATGGGAGGCACCTTACTACTAGCATCTTTAGAAGTTTTCGATTTTCCTCC
TATATTTTGGATACTGGATGGACATGCACTATGGCACTTTGGAACTATTC
CTATACCTTTTCTATGGTTCAGTTTTTTGACTGAGAATGCTTTATTTGAA
ACATCAAAATCTTCCTTAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010798XLOC_010798Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019242-proteinTCONS_00019242-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019242-exon-sc0000321-1575043694:93278..93716TCONS_00019242-exon-sc0000321-1575043694:93278..93716Clytia hemisphaericaexon
TCONS_00019242-exon-sc0000321-1575043694:90337..92323TCONS_00019242-exon-sc0000321-1575043694:90337..92323Clytia hemisphaericaexon
TCONS_00019242-exon-sc0000321-1510915933:93278..93716TCONS_00019242-exon-sc0000321-1510915933:93278..93716Clytia hemisphaericaexon
TCONS_00019242-exon-sc0000321-1510915933:90337..92323TCONS_00019242-exon-sc0000321-1510915933:90337..92323Clytia hemisphaericaexon
TCONS_00019242-exon-sc0000321-1491911889:93278..93716TCONS_00019242-exon-sc0000321-1491911889:93278..93716Clytia hemisphaericaexon
TCONS_00019242-exon-sc0000321-1491911889:90337..92323TCONS_00019242-exon-sc0000321-1491911889:90337..92323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:90337..93716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.5241	24.3595	23.2647	23.7181	10.6607	6.34376	8.04438	9.49567	6.98527	5.99654	12.5325	4.2524	7.34355	6.16739	5.30669	8.27905	5.65816	5.35617	4.81414	6.40832	8.57161	7.17701	18.9537	17.9323	4.74203	8.32629	10.5106	7.79815	20.4436	16.8657
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007217Per1-like
Blast
[Close]
BLAST of TCONS_00019242 vs. Swiss-Prot (Human)
Match: PGAP3 (Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.707e-54
Identity = 106/298 (35.57%), Postives = 163/298 (54.70%), Query Frame = 3 
Query: 1350 SPGDRDPHFQLCSRKCIVNCINQQ----------------HSFLSWGCKGECEYDCMFRITDERTKLGLDILQYYGKWPFYRLFIIQEPASFIFSVLNLVSQIIGWIHYSKNVDSSFKFYGLAKVQSFINSVAWTCAIIFHTRDTYWTEKMDYFSAAAVIGVSLFTCFSHIIGDMESFATKFIGALILSVFSFHIYYMAFIHFDYGYNMKFLVSNGIINITVWFIWSWINRKKRP-VGKCVLVMGGTLLLASLEVFDFPPIFWILDGHALWHFGTIPIPFLWFSFLTENALFETSKSS 2192
            S GDR+P +    R C++ C  Q                  S   W C+ +C+Y+CM+       + G  + Q++GKWPF R    QEPAS + S LN ++ ++    Y   V +S   Y      ++++  AW  + +FHTRDT  TEKMDYF A+ VI  S++ C    +G           AL+L + + H+ Y++ I FDYGYN+   V+ G++N+  W  W   N+++ P V KCV+V+     L+ LE+ DFPP+FW+LD HA+WH  TIP+  L+FSFL +++L+   +S 
Sbjct:   21 SQGDREPVY----RDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDSLYLLKESE 314
The following BLAST results are available for this feature:
BLAST of TCONS_00019242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGAP34.707e-5435.57Post-GPI attachment to proteins factor 3 OS=Homo s... [more]
back to top