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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019206 ID=TCONS_00019206|Name=TCONS_00019206|organism=Clytia hemisphaerica|type=transcript|length=2102bpRun BLAST on NCBI protein sequence of TCONS_00019206-protein >TCONS_00019206-protein ID=TCONS_00019206-protein|Name=TCONS_00019206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp MNCTRVDHESIICNGTLFTKPEEPLSPHDSLFWIYLGVYIFLMLFAGLMSRun BLAST on NCBI transcript from alignment at sc0000321:108057..130868+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019206 ID=TCONS_00019206|Name=TCONS_00019206|organism=Clytia hemisphaerica|type=transcript|length=22812bp|location=Sequence derived from alignment at sc0000321:108057..130868+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000321:108057..130868+ >TCONS_00019206 ID=TCONS_00019206|Name=TCONS_00019206|organism=Clytia hemisphaerica|type=CDS|length=12630bp|location=Sequence derived from alignment at sc0000321:108057..130868+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019206 vs. Swiss-Prot (Human)
Match: CNNM2 (Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 3.023e-42 Identity = 128/323 (39.63%), Postives = 195/323 (60.37%), Query Frame = 2
Query: 281 KVLQAAGKEKEKKYAQRIVPXXXXXXXXXXXXXXANAGAVEAMPIFMDKITNP-VLAILVSVTAVLIFGEIIPQALCSRYGLAIGYYLSPLVYFLMFIFFIVAWPISKLLDCLLGENHATYFRRAELKALVDLHQRADTLEDEEPLTIDEALIIQGALDLKNKTAKDALIPXXXXXXXXXXXXXXXXTMDLILNAGHSRVPVHEKSSGKIVGILLVKSIIKLSPKDSTPVHTQM---NSDGFLTFQQSEPLYNILNAFQTGKSHMCIVNKDDGSGEE----HIVGILTXXXXXXXXXXXXXXXXTDKYIDVARRIQVARLKRK 1225
+++Q G EKEK YA+RI P+ ++ + LL +LLL N + I +D I ++A++VS ++IFGEI+PQA+CSR+GLA+G L F M + F ++P+SKLLDC+LG+ T + R + L+++ + D D L +E IIQGAL+L+ KT +D + PL + M+ + +LD NTM I+ +G++R+PV E IV +L VK + + P D TP+ T N F ++ L +L F+ GKSH+ IV + + GE ++GI+TLEDVIEEI++ EI+DETD Y D + +VA +RK
Sbjct: 288 RIVQNCGTEKEKNYAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNR---EKLLEMLRVTDPYND---LVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTK-LDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVAHRERK 603 The following BLAST results are available for this feature:
BLAST of TCONS_00019206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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