TCONS_00019200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019200
Unique NameTCONS_00019200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019200 ID=TCONS_00019200|Name=TCONS_00019200|organism=Clytia hemisphaerica|type=transcript|length=292bp
ATGGTCTTCATTTGTgctcaaactatttttttttactcttttcgTTTTAA
CGAAAAGACTCCCTGCCCCAATACGACCTCCTCTAATTGTATTTTCCTCG
TAAAAAAAACAACCCTGCCTCAGTTTGACCTCTTCTATAATTGTGTCTCC
TCTCTGACTAAGCACATGCCCCTGTCTAAATTTGACCTTTGTTACCTCTT
CCAATTTTGAATTCTCTCGTAACAGAAAGGCACCCTTGTCTCTCTTTGAC
CTCCTTTATATTCTCAATATTTCGTGTGACCAGATTCAAGTT
Run BLAST on NCBI

transcript from alignment at sc0000320:296667..296958

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019200 ID=TCONS_00019200|Name=TCONS_00019200|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000320:296667..296958 (Clytia hemisphaerica)
AACTTGAATCTGGTCACACGAAATATTGAGAATATAAAGGAGGTCAAAGA
GAGACAAGGGTGCCTTTCTGTTACGAGAGAATTCAAAATTGGAAGAGGTA
ACAAAGGTCAAATTTAGACAGGGGCATGTGCTTAGTCAGAGAGGAGACAC
AATTATAGAAGAGGTCAAACTGAGGCAGGGTTGTTTTTTTTACGAGGAAA
ATACAATTAGAGGAGGTCGTATTGGGGCAGGGAGTCTTTTCGTTAAAAcg
aaaagagtaaaaaaaaatagtttgagcACAAATGAAGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010781XLOC_010781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019200-exon-sc0000320-1491911889:296667..296958TCONS_00019200-exon-sc0000320-1491911889:296667..296958Clytia hemisphaericaexon
TCONS_00019200-exon-sc0000320-1510915933:296667..296958TCONS_00019200-exon-sc0000320-1510915933:296667..296958Clytia hemisphaericaexon
TCONS_00019200-exon-sc0000320-1575043694:296667..296958TCONS_00019200-exon-sc0000320-1575043694:296667..296958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:296667..296958 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27812	0.415455	0.482383	0.471936	1.72361	0	0.54774	0.512787	1.07704	0.889395	0.863268	1.4187	1.98341	0.588513	0.725756	0.778848	0.959477	0.327811	0	0.94783	0.823837	0	0	0.444106	0.914838	1.33531	0	0	0.47287	0.963559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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