TCONS_00019190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019190
Unique NameTCONS_00019190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019190 ID=TCONS_00019190|Name=TCONS_00019190|organism=Clytia hemisphaerica|type=transcript|length=1309bp
GANCAATCCTGCTATCAATAagGAGAATCCAAAGTTTACAAAGCCTATAA
GCAGAGCATCGTTTTACTTCGTGGATAAGTTCATCTTATTGACACACGGA
AAATGGCTTcttttgtattcttatcatctGGACCCTGTCAAAAACGAAAT
TAAGAGATACCAAAACAACTGCAGATACAAGCTGGTCAAAGACTTTGAAG
TTGAAGACACCCAAAATATTACCACATTCTCTGCAATCAATACTTTCTAT
TCTTACAAAGTGATTTGCGCATGCTCAAACCGTAGTTTGGCCATCTTTGA
CATGAACAAAGGCGAAGAAGTTCAAACCATCAAAGATGCTCATACGCGAC
CTGTTCATTCAGTTTCCCAAATACAGGGTTCGACGTTCATCGGGCTTCCA
TCTGAATCATACGAACTTTTTGTTACTTCTGCACCTCACGATGGTGTCAA
GCTTTGGGACACCAGAACATATAGATCAGTTCGTAAATACGAGGGTCATG
TGAATCGCTCACAGAAAGTTGGATTGGCGGTCAGTCCATGTGCAAAATAT
ATCGCTGTTGGCTCGGAAGATAAATCGGTGTATATTTACGACATTCGGAG
CAATTCATACCTACATTCTTTACCTGGTCACAAGGACAATGTATCGGCGC
TTGCTTATCACCCACAAAAGCCAACTTTGGCTTGTGGAACTTTATCTGGT
TCATTTCGATTGTACAGCGATGCTGAAAAGGTTTGAATAAAAGATGGATT
CGTCGTCACCCATTTCGCCTTTATAAACAACCAATGTTCTATAGGGCTCC
CCCTTATTTGGaaaaccgaaatatttttaagattCCAGTAGTATATTACA
TTCCTGTGCAACAGACCCGGTGGAAACCCCACCTTACTAGGAAATTTAAC
TTTCTTCCTCGGtgggttgaatttcaatggaaAAACTGCACTATCACAAT
TGGATTTTtcaacaataaaatttatacCCCCATTTGGGATTTCGATAAAA
AACGATATCCCACTCACTGCGAGGGAATAATTAACGCCgtggcactgaga
caggggtgtttgcttggtaaaaatagtgtttttctatatatcaaattttt
gtaatttgcGAACGACTTTCATGCTTTCGATTGTCgctgattttttttgt
taatatgCTTGTATATATCATTAGTGGAcatttttgtatcaaaatttaaa
aattttattggtGAATTTTTATGTGTGtaaataatttatgaaataaTAAG
ATTATCCCATCCAAAATGTAATATTTTTTATCTAATCCTTTATACAGGAt
actcaaaat
Run BLAST on NCBI

transcript from alignment at sc0000320:304922..310819-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019190 ID=TCONS_00019190|Name=TCONS_00019190|organism=Clytia hemisphaerica|type=transcript|length=5898bp|location=Sequence derived from alignment at sc0000320:304922..310819- (Clytia hemisphaerica)
GANCAATCCTGCTATCAATAAGGTAATTTTTAAAACATTTTGCTTAAAAA
ATACTTCTTTTCTGTAACCAATTTGAAGTTAGTTTTAACATACCACAGTG
TTTCTTCACTTTCCTGTCTTCAATAGATAGCTATTTGGTCTAGATTAGAC
ACCCCTGTCTCAAGCGTTTTTTTCTCAATTTGGGTTCAAATTAAATATGA
ATTCAAATGGGAATATAAAACCTACTATATTCTTTTTAAAAGAACAACAA
CGGTTATAAAGACACTTTTGGGTGGTGGATACATCAATCTTTTTTCAGTT
TTGTATTTAATCAATGATGACATTATTGTTTTCAGGAGAATCCAAAGTTT
ACAAAGCCTATAAGCAGAGCATCGTTTTACTTCGTGGATAAGTTCATCTT
ATTGACACACGGAAAATGGCTTCTTTTGTATTCTTATCATCTGGACCCTG
TCAAAAACGAAATTAAGAGGTATGAGAAAATTGATTTGACGATTTATTTA
TTTGTGATTCGTTATGAACACTCCACTCGTTGCGCTCAAAAAGAAAGAAG
TCCATACAAAACCTCCTACTTTAGGCGTACACATTTTCGCGAACAGAAAC
TTTCGCGAGTTTTAACCTCTTTCGCGAAAGTAAATGTCTTTGGAAATTAT
GGAAAGAGCTATTCGTGAAAGTCAATCCTCGCGAAAAATTCTTGACAAAA
TAGAAAATCTGAAAAATTCTTCATTTTCATCCCTTGATTCGCGAAAGTCT
GTAAGTCCAAAGTAGCCCGGTGATTTGCTAGATTTTTGGCCTCATTTGCA
AAGATTATAATGTCTTTGAAAATTCTCAACAGGGCAATTCATGAAAGTTT
ATGCACGCGAATAATTCTTTGAAAGTTTGAAAATCTACAAAACTTCTTGA
TAAATTTCAAATCTCAAGTATATTTTAAGCTTTTCAGGCTCGGATACAGA
GGGAGGCTATAAACAATGGAGGAGAGTGCACTTTATTATCGTATTACCTT
ATATGGAAACTAATCACTCTCCATGAATAAGATAGCCTACCTCCTGTATC
CGACCATGCTTTTAGCACCTCTTAGGTGATGAGGAATCATTTTTATCGGA
TTTGAAGAATTTTTAACACTTTTAAGCCGATTTTCGTTTGTAATTTATAA
TTTTCATCCAAAAAATTCGCTGAGATTTCGTACCTCAAATCCATTGTCTT
GGTTGTATCACTTCCAGGTATCACTTTTATTAAAGTCCGTTCCTGATCAA
GTTTAAATTGTTCCTGTTGATTAATGCTTTAATTTAAAACGCGCTGTACA
ACCGAATCTATCAAACTTCATTTCAGATACCAAAACAACTGCAGATACAA
GCTGGTCAAAGACTTTGAAGTTGAAGACACCCAAAATATTACCACATTCT
CTGCAATCAATACTTTCTATTCTTGTATCCTTTTCAATCTTCAATGTCCT
CTTGTTCATTGTCTTCATGTTAACAATCAAATGAGTGCAGGGGTGATTTC
TAAATTATCGAGATTCTAGGAGTGCGATGCTCCTCAGGCGCTTATAGGAG
AGTGGCGCTCATTTTAAGATAAAAGATATCTGTAATATTTTGGTAACATT
ATTTTAACCAAATGGCACAAATTATGTTCCATTATTTTTGCAGCTTTTTA
TCATAAAAACATTTAGTTTTAACATACTCACACAAGTTCGGTAGCATAAC
GTTTATCTAAACATCAAATTATGGCTAGTTAGACTATTCAATTCTAATGG
AGGTGAGGGTGCGGCGATCTTAGAGGGCGGTGCTTTTTATGACTTTAGGT
GCCATCTTTTCAAGTTATTTTCGAAAATTGACTACAGTGGACGCACGGGA
AAAGAAATTTTGTTCGTTTGAAGGAAGCTATAGAGGCTGTTATAAGGCAT
TGTTGACTGAAGGAACTAGAAAACTTGTTCGAGTCCAGGTGAAAATTGAG
TTGTAGAGGTTCGAGTTAAAGATACACCGCTGTAGTTACAAAATATAAGC
GTGTAAACCATTTCGATTTGATGATATTGTAAACTTTTTTTCTTTAATAT
AAATTGACATTGAATCTGAACAGACAAAGTGATTTGCGCATGCTCAAACC
GTAGTTTGGCCATCTTTGACATGAACAAAGGCGAAGAAGTTCAAACCATC
AAAGATGCTCATACGCGACCTGTTCATTCAGTTTCCCAAATACAGGTGAA
AATACTCATTGAAGATTATCTAAAATATTGCTATACTACATGCACTACAC
ATACTACACACACTACACATACTACACATACTACACATACTGTACAGTTG
ACTCTCGCTTTTCAAGGGGCCAAGAATTTTCTTAGGAATGAATATCTTTC
GCATAAAATATATTTCTTTGAGATCATAACAAGTATAAAGTTTGAAGAAA
TGTCTACATCAATACATGACAATGATCTTTTCAAGAAGGAAGGTTTGTAA
AAGGCAAATAATTCATTTGAGATCGAGTTCCTTAGAAGAAAACTTTCTAG
AAGAATTTGTGCGTTTAGCATCGGTCTGAATCAGTTGTATATTTAATCTA
GCTCTAAATAGTACATATAGTATTAATTGACTCCCTACTAATTGTTATTT
CACAGGGTTCGACGTTCATCGGGCTTCCATCTGAATCATACGAACTTTTT
GTTACTTCTGCACCTCACGATGGTGTCAAGCTTTGGGACACCAGAACATA
TAGGTAAGTTTTTTCGTGAATTGCACAGTTTATTTCACTACTTACTTNTA
CTAGAACATATAGGTAAGTTTTTTACCCTTTTCGTGAATTGCACAGTCTA
TTTCACTACTTACTTCGGAATTGAACAGTCAATCGTTAAATCTTTGAGAA
TACTCCCTCTCCTCTCAATTGCACTGTCTCTTTTATGAAGCAAAAATATT
CCCTATCAGTATTCCACTTTGAATGAGTGGATACATATTCATCGTTAATC
TTTTTCTCATTTCCTCCAGATCAGTTCGTAAATACGAGGGTCATGTGAAT
CGCTCACAGAAAGTTGGATTGGCGGTCAGTCCATGTGCAAAATATATCGC
TGTTGGCTCGGAAGATAAATCGGTAAGGAATTTACGATTTGATTGAACAA
CACCCGCTTTTAACAATTCCCTCGAGATCCCTTGATATATCCAGAAAGAA
TTGGCCAAACAATCGTCCCCATAGAGGTAAATGTCTTTTCATCCGGTTAC
AACCCTAGCAACATCTCCATCGAGAAACACTTTATCTTATTGGTATTAAA
TTTCGCGGGTTACAAAATTTCGCGGGTACTTAATTCGCGATTTTTTAGGT
CAAATTTCGCGAAATTCAATACCGTTTAAATTTTTCAAAAATACAAAATT
GTGAAATTAAATACACGCGAAAAAATTTCAAAATAGGCCGAAAATCGAAA
ATACTTATTTGTTACATTTAGTTACTATTTTTGACACTAGTTTTGTTACT
ATTTTTGGTATGTTTACTCTAAGGTTCCAAATAAACGGTCCCCCCCCCCC
CCCCGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGTTTATTAAAATTTTG
AAAATTTTCTAACCTCCTAACTAGGTAAATCGAACAAAAGATTGTCGAAA
AAATGTTACCTGTTCCTCAAAAAACAACAGAGTTTCCATCTCCATTGCCA
TTATAACCCTTCCATTTTTTTAACATTATTTTAGCCATCTCCATTGGCTA
AAAAATTCCCATCCGTACTACAATCATGGACAAAATATTTGAGACAAAGG
GGATTTCCCTGTGAAATTGTAAACATCACAAATGATTTTTAAACGCGTAA
AACTACAGTTGGAAAGTAGAGTTTTAACATGAGGCTTAAGTCTTGCGACC
TTAGAATCTCAGGATATAAAAGCTCAAATTTGCTTCAATAAGGCTTGGAA
TATATAGCCTAGAATCCACTGAACCCCTCCAAAATCGAAATATTCAATGA
AAGAAAGTAGAAGTGCTAAAATTGCAATTCTCGCCCGAGCTTTAATTTTG
AAATGCACCAAAATGTCAATATATTTCGACCATGATTGTAGTAATACATG
TATGTGTGTGAAAAGACACTGGTACTACTCATGCTGACCATTGTGTGTAT
TGACTAATACTGACCATTATCTGTCATTTTAGGTGTATATTTACGACATT
CGGAGCAATTCATACCTACATTCTTTACCTGGTCACAAGGACAATGTATC
GGCGCTTGCTTATCACCCACAAAAGCCAACTGTAATTAACTCACTACTTC
TTTTCAACTTTCTGAAAAAAATTACCTTAAGGGAACTTATTTTGGCGGTA
ACTAATTTTGACGAGCGGCAAAAATCCTGAAAATTTTTAATTTTGGCGAG
AACTAATTTTGGCGAATGACAGCGTAAATCTGTTCTATTTTGCCTTATTT
GAAGCTTTTTTTTGCAAACTCAAGAAGTTATTCAGGCAAAATACCAAAAA
ACATAATTTTTGCAAGAACTTATTTTGGCGAGTGAGCAAAATATTTAATT
TTGGTGGAAACTAATAATTTTGTCGAATTTTGTCTAAATTCGCCGAATTG
GGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTT
TTCATGATTTACCCCTGGACATTTAGATTTTTGACCCCCTGGACACGGGT
TATACCCCTGGACAAACATCAAATCAACCCCGTGGACACAAAAAATTACC
CCTGGACATTGGAATTTACCCCCTGGACATTGCAATTTTTTGGTATTTTT
TCAATACCCCTGGACAATTCATCCTCCACCCCCCATGAACGGACTTTTTC
TGGATGAGCCCATTCGCCAAAATTAGTTCCCGCCAAAATAAGTACCCTGA
AGGTATGTTTTGTTCAGTTAGGCGATACTAGACGATACTAATTTTACAAG
GCATTTTCACTCCATGAAGAAGTTATAGGCATAATTCTGTATAAGTTCAA
AGTTACTTTTATTAAAAATATTAATAAATTAGTCGGTGTTAAAAATAGGT
CATGCAGTATTTCCGGTGCTTTTGTCACTATCTCTGGTGAAAAAAATTGT
CGTTTTGGACATGTATCTTCCCCTACAATCAAAACTACGTAAATCTATTT
CAATTTCTTTAACAGTTGGCTTGTGGAACTTTATCTGGTTCATTTCGATT
GTACAGCGATGCTGAAAAGGTTTGAATAAAAGATGGATTCGTCGTCACCC
ATTTCGCCTTTATAAACAACCAATGTTCTATAGGGCTCCCCCTTATTTGG
AAAACCGAAATATTTTTAAGATTCCAGTAGTATATTACATTCCTGTGCAA
CAGACCCGGTGGAAACCCCACCTTACTAGGAAATTTAACTTTCTTCCTCG
GTGGGTTGAATTTCAATGGAAAAACTGCACTATCACAATTGGATTTTTCA
ACAATAAAATTTATACCCCCATTTGGGATTTCGATAAAAAACGATATCCC
ACTCACTGCGAGGGAATAATTAACGCCGTGGCACTGAGACAGGGGTGTTT
GCTTGGTAAAAATAGTGTTTTTCTATATATCAAATTTTTGTAATTTGCGA
ACGACTTTCATGCTTTCGATTGTCGCTGATTTTTTTTGTTAATATGCTTG
TATATATCATTAGTGGACATTTTTGTATCAAAATTTAAAAATTTTATTGG
TGAATTTTTATGTGTGTAAATAATTTATGAAATAATAAGATTATCCCATC
CAAAATGTAATATTTTTTATCTAATCCTTTATACAGGATACTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010772XLOC_010772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019190-exon-sc0000320-1575043694:310798..310819TCONS_00019190-exon-sc0000320-1575043694:310798..310819Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:310351..310484TCONS_00019190-exon-sc0000320-1575043694:310351..310484Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:309396..309493TCONS_00019190-exon-sc0000320-1575043694:309396..309493Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:308625..308746TCONS_00019190-exon-sc0000320-1575043694:308625..308746Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:308117..308214TCONS_00019190-exon-sc0000320-1575043694:308117..308214Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:307748..307850TCONS_00019190-exon-sc0000320-1575043694:307748..307850Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:306439..306537TCONS_00019190-exon-sc0000320-1575043694:306439..306537Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1575043694:304922..305554TCONS_00019190-exon-sc0000320-1575043694:304922..305554Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:310798..310819TCONS_00019190-exon-sc0000320-1510915933:310798..310819Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:310351..310484TCONS_00019190-exon-sc0000320-1510915933:310351..310484Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:309396..309493TCONS_00019190-exon-sc0000320-1510915933:309396..309493Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:308625..308746TCONS_00019190-exon-sc0000320-1510915933:308625..308746Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:308117..308214TCONS_00019190-exon-sc0000320-1510915933:308117..308214Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:307748..307850TCONS_00019190-exon-sc0000320-1510915933:307748..307850Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:306439..306537TCONS_00019190-exon-sc0000320-1510915933:306439..306537Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1510915933:304922..305554TCONS_00019190-exon-sc0000320-1510915933:304922..305554Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:310798..310819TCONS_00019190-exon-sc0000320-1491911889:310798..310819Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:310351..310484TCONS_00019190-exon-sc0000320-1491911889:310351..310484Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:309396..309493TCONS_00019190-exon-sc0000320-1491911889:309396..309493Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:308625..308746TCONS_00019190-exon-sc0000320-1491911889:308625..308746Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:308117..308214TCONS_00019190-exon-sc0000320-1491911889:308117..308214Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:307748..307850TCONS_00019190-exon-sc0000320-1491911889:307748..307850Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:306439..306537TCONS_00019190-exon-sc0000320-1491911889:306439..306537Clytia hemisphaericaexon
TCONS_00019190-exon-sc0000320-1491911889:304922..305554TCONS_00019190-exon-sc0000320-1491911889:304922..305554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:304922..310819 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.53591	1.91307	0.902944	1.48776	2.31003	0	1.12174	1.34994	2.67657	4.44221	3.00176	3.61775	2.87347	2.81114	2.09293	2.41466	2.88374	2.91388	2.63824	3.56593	2.60978	2.45902	1.43324	2.10309	0.537592	0.954129	1.32927	1.57667	1.20614	1.17801
Blast
[Close]
BLAST of TCONS_00019190 vs. Swiss-Prot (Human)
Match: WDR27 (WD repeat-containing protein 27 OS=Homo sapiens GN=WDR27 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 2.260e-62
Identity = 96/227 (42.29%), Postives = 144/227 (63.44%), Query Frame = 2 
Query:   35 FTKPISRASFYFVDKFILLTHGKWLLLYSYHLDPVKNEIKRYQNNCRYKLVKDFEVEDTQNITTFSAINTFYSYKVICACSNRSLAIFDMNKGEEVQTIKDAHTRPVHSVSQIQGSTFIGLPSESYELFVTSAPHDGVKLWDTRTYRSVRKYEGHVNRSQKVGLAVSPCAKYIAVGSEDKSVYIYDIRSNSYLHSLPGHKDNVSALAYHPQKPTLACGTLSGSFRLY 715
            F+KPI  A FY++D FILL+ G    L  YH+D  K+EIKRY+   + KL+         ++T+ SA+N FYS+ V+ A  NR++ +FD+N G     I +AH+RPVH + Q +GS+F     ++Y LF+T+A  DG++LWD RT R  R +EGH  R    G+A SPC ++ A G+ED+  Y+Y++ S+++ H L GH D V+ +A++P  P LA  TL G  +L+
Sbjct:  598 FSKPIQSAQFYYIDAFILLSSGPEFQLLRYHIDTCKDEIKRYKQKSKSKLICRLSTTGAVDMTSLSAVNDFYSHIVLAAGRNRTVEVFDLNAGCSAAVIAEAHSRPVHQICQNKGSSFTTQQPQAYNLFLTTAIGDGMRLWDLRTLRCERHFEGHPTRGYPCGIAFSPCGRFAACGAEDRHAYVYEMGSSTFSHRLAGHTDTVTGVAFNPSAPQLATATLDGKLQLF 824
The following BLAST results are available for this feature:
BLAST of TCONS_00019190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR272.260e-6242.29WD repeat-containing protein 27 OS=Homo sapiens GN... [more]
back to top