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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019179 ID=TCONS_00019179|Name=TCONS_00019179|organism=Clytia hemisphaerica|type=transcript|length=2968bpRun BLAST on NCBI protein sequence of TCONS_00019179-protein >TCONS_00019179-protein ID=TCONS_00019179-protein|Name=TCONS_00019179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=779bp MEQRLWGTAKTTQRDRQRYFESFRQKRSLINNQSSSSSDDNSDDEEWIQQRun BLAST on NCBI transcript from alignment at sc0000320:142788..154037- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019179 ID=TCONS_00019179|Name=TCONS_00019179|organism=Clytia hemisphaerica|type=transcript|length=11250bp|location=Sequence derived from alignment at sc0000320:142788..154037- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000320:142788..154037- >TCONS_00019179 ID=TCONS_00019179|Name=TCONS_00019179|organism=Clytia hemisphaerica|type=CDS|length=37392bp|location=Sequence derived from alignment at sc0000320:142788..154037- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019179 vs. Swiss-Prot (Human)
Match: ECE2 (Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4) HSP 1 Score: 434.491 bits (1116), Expect = 4.800e-136 Identity = 236/673 (35.07%), Postives = 396/673 (58.84%), Query Frame = 2
Query: 971 CNTDGCVQASHRILTYADQAREPCDSFYDYACGAWAKENAIPSTHLSKWTSFTEVSDKNQRLLKRILDDMHADPQDNEALEKVRMFFNSCLRTDFIEKQGNASLEKLIQYVGSWALTGGEWNEERWSFGQALTRIHHL-KSMPLFYMYVAADDRXXXXXXXXXXXXGITLADESFYQSNPKNDKMVKSYLKLLATTGMLLGGKKKSIIEQSMEVFEFEKKLASI-YEKREGKGADKMYNRITVAELLKLCPAIPWLDYMNSMFE-VPVKADEDIVVYTPNYLKKMSDLVIKTDRRIIANYMVWHLIKPTLPLLSKPYRNAALEFLGKDVNNHQDKGEESWKNCVTKTDSMLGFGTGYLFVXXXXXXXXXXXXXXXRMLKLIKEEFTVALRHNTWMDDVTKQRAIDKTNSIIEMIGYPYWIENLKSLENYYQDLNITNDPL-QNYFNAREFYHSKTMERRGKLVRRNEWHMTPTEVXXXXXXXXXXXXLPMGLLQPPFFSPNYPHSMNYGALGTIIAHELSHGFDSQGRNFDKSGNLNKWWSNVTFESFDNKTQCLKKHYHKYQ----KKNTSRTLAEDLADQGGLKIAHQAFKTHQYLHEEDRTLPAISLSSEQLFFLGYAQSWCTISSNQQQQNA--ADVHSDSRTRVDASLSNSEAFAKAFKCPTNSRMNP 2959
C T+ C++ + +IL D+ PC+ FY ++CG W + N +P S+W +F + D+NQ +LK +L++ + +EA +K + F+ SCL+ + IE+ G L LI+ +G W +TG W+++ +F + L + ++ P F +Y++AD ++S+ N+IQ+ QSG+ L +Y + N+K++ +YL + GMLLGG+ S EQ +V E E +LA+I + + + +K+Y++++++EL L P++ WL++++ + + + E +VVY +YL+++S+L+ +T+ I+ NY++W+L++ T L + + +A + L + + + W+ C++ TD LGF G LFVK + M+ I+ F AL WMD+ T+Q A +K ++I +MIG+P +I K L++ Y I+ D QN N F ++ K R++W MTP VNAYY N I P G+LQ PF++ N+P ++N+G +G ++ HEL+H FD QGR +DK GNL WW N + +F N T C+++ Y++YQ + N +TL E++AD GGLK A+ A+K H E++ LPA+ L++ QLFF+G+AQ WC++ + + D HS +R RV +LSNS F + F CP S MNP
Sbjct: 212 CLTEACIRVAGKILESLDRGVSPCEDFYQFSCGGWIRRNPLPDGR-SRWNTFNSLWDQNQAILKHLLENTTFN-SSSEAEQKTQRFYLSCLQVERIEELGAQPLRDLIEKIGGWNITG-PWDQD--NFMEVLKAVAGTYRATPFFTVYISADSKSSNSNVIQVDQSGLFLPSRDYYLNRTANEKVLTAYLDYMEELGMLLGGRPTSTREQMQQVLELEIQLANITVPQDQRRDEEKIYHKMSISELQALAPSMDWLEFLSFLLSPLELSDSEPVVVYGMDYLQQVSELINRTEPSILNNYLIWNLVQKTTSSLDRRFESAQEKLL-ETLYGTKKSCVPRWQTCISNTDDALGFALGSLFVKATFDRQSKEIAEG--MISEIRTAFEEALGQLVWMDEKTRQAAKEKADAIYDMIGFPDFILEPKELDDVYDGYEISEDSFFQNMLNLYNFSAKVMADQLRKPPSRDQWSMTPQTVNAYYLPTKNEIVFPAGILQAPFYARNHPKALNFGGIGVVMGHELTHAFDDQGREYDKEGNLRPWWQNESLAAFRNHTACMEEQYNQYQVNGERLNGRQTLGENIADNGGLKAAYNAYKAWLRKHGEEQQLPAVGLTNHQLFFVGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNSRDFLRHFGCPVGSPMNP 876 The following BLAST results are available for this feature:
BLAST of TCONS_00019179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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