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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019174 ID=TCONS_00019174|Name=TCONS_00019174|organism=Clytia hemisphaerica|type=transcript|length=4611bpRun BLAST on NCBI protein sequence of TCONS_00019174-protein >TCONS_00019174-protein ID=TCONS_00019174-protein|Name=TCONS_00019174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1335bp MHLIDQVLMLNGNEAAVPIKVAIRVRPFVGEENYSQGESCLYCVPGKPHIRun BLAST on NCBI transcript from alignment at sc0000320:55272..76998- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019174 ID=TCONS_00019174|Name=TCONS_00019174|organism=Clytia hemisphaerica|type=transcript|length=21727bp|location=Sequence derived from alignment at sc0000320:55272..76998- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000320:55272..76998- >TCONS_00019174 ID=TCONS_00019174|Name=TCONS_00019174|organism=Clytia hemisphaerica|type=CDS|length=112224bp|location=Sequence derived from alignment at sc0000320:55272..76998- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019174 vs. Swiss-Prot (Human)
Match: KIF27 (Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1) HSP 1 Score: 368.237 bits (944), Expect = 4.397e-105 Identity = 232/642 (36.14%), Postives = 348/642 (54.21%), Query Frame = 1
Query: 196 VPIKVAIRVRPFVGEENYSQGESCLYCVPGKPHILVKSKNKEYQFDYVYDQNCSQNDVYSGCVTSLVDAFFTGYNGTVFAYGQTGSGKTYTMGIGSCVYLDEIQKGIVPRALNDIFRKKEALEQDVVCKLSVTFIEIYREETTDLLDNSCT---LQIREDEKGTTVIVGAREEXXXXXXXXXXXXXAGTALRHVGSTNMNEQSSRSHCIFTVKLEQYQFGEEQGMEG-----KCLCSSLHFVDLAGSERAHRTGNQGTRFKESVSINTGLLALGNVISALTDTKRKKRHVPYRESKLTRLLKNSLGGNSRTVMITCLSPTDADLDEVINSVSYASRAQKIFNQPVVNWNREKSQIDGMRKEINNLRSELQRRRSGDPRDRNYHENDEVNSRVDHLTMEHEKRDQKEAT--------LFNILHEVNAIIHAIQSTHPPLSSQLNLQIESWRDKWKDKSQSNRPLSAPSSIIKMSHEITE-QLQNELLHYKERDMENNVMIENKSNEVDELRQEVIAFGEENAKLRLDLDIAINTTRDFQERLFEQQMAIKHFQN-----------------------KQPGSHPSTATVTT-------LPSDNYSTTGGGVRP--RPNRMVERFRVKNDLLVSEIDEMDWVEH 1974
+P+KVA+R+RP + +E + C+ +P +++ +++ + FD+V+ +N +Q++VY+ C+ LV + GYN TVFAYGQTGSGKTYT+G G + E QKGI+PRA+ +IF+ + + V++IE+Y+E+ DLL+ + L IREDEKG TVIVGA+E V++ +V +LL+ G A RH G+T MNE SSRSH IFT+ + Q E +G + + S HFVDLAGSER +TGN G RFKES+ IN+GLLALGNVISAL D +RK H+PYR++K+TRLLK+SLGG+++TVMITC+SP+ ++ DE +NS+ YA+RA+ I N+P VN++ E +ID M EI LR LQ +++G + + ++ H E + Q E F L ++ + + L N+ I+ R K S R + +S+ + +T QL+ EL + + V+ K EV EL+ +V +EN + L A R E++ EQQ+ + + P P T T +PS S P +R+ FR ++ +L+ I+E D V H
Sbjct: 4 IPVKVAVRIRPLLCKEALHNHQVCVRVIPNSQQVII-GRDRVFTFDFVFGKNSTQDEVYNTCIKPLVLSLIEGYNATVFAYGQTGSGKTYTIGGGHIASVVEGQKGIIPRAIQEIFQSISE-HPSIDFNVKVSYIEVYKEDLRDLLELETSMKDLHIREDEKGNTVIVGAKECHVESAGEVMSLLEMGNAARHTGTTQMNEHSSRSHAIFTISICQVHKNMEAAEDGSWYSPRHIVSKFHFVDLAGSERVTKTGNTGERFKESIQINSGLLALGNVISALGDPRRKSSHIPYRDAKITRLLKDSLGGSAKTVMITCVSPSSSNFDESLNSLKYANRARNIRNKPTVNFSPESDRIDEMEFEIKLLREALQSQQAGVSQTTQINREGSPDTNRIHSLEEQVAQLQGECLGYQCCVEEAFTFLVDLKDTVRLNEKQQHKLQEWFNM-IQEVR---KAVLTSFRGIGGTASLEEGPQHVTVLQLKRELKKCQCVLAADEVVFNQKELEVKELKNQVQMMVQENKGHAVSLKEAQKVNRLQNEKIIEQQLLVDQLSEELTKLNLSVTSSAKENCGDGPDARIPERRPYTVPFDTHLGHYIYIPSRQDSRKVHTSPPMYSLDRIFAGFRTRSQMLLGHIEEQDKVLH 639 HSP 2 Score: 149.828 bits (377), Expect = 4.461e-36 Identity = 159/544 (29.23%), Postives = 307/544 (56.43%), Query Frame = 1
Query: 2257 EEEDVELQRLESSRQSIITGAKEASNTAQKYKRQIKVLQVQISQKESLIAEVANGELTANETKNL---YHKKLVKLQKEYDKSKKELDEAQKKIAQLENTDNSEPVDLSQLKNLEADYXXXXXXXXXXLNEVQESETANKHLTKYQKNYERRLKDLEGQLARSKNLYKDVNRQLKSETDKKVKYEQELRKNEVRIKELELKTDKQQKVLKRKNEEVVKATRKLRYGVDQAKEN-EEFEKKRLWLENEIEKIFHQQKDIELLEKSLRDRDSSLKKKEALMVEKGELELXXXXXXXXXXXXXXXXXXXMDTIEEEISQHHRRSVQGHHDESDEQS-----VEQLIRVKDELLVQKLQMDQLFETGG-LALNEERRLIELGEAIEAVEEALQYKNDLIEKKQLTL-ADEDVDYRNVEFLLDNMGILSKSEYKHLLGKFFIKIIELRKSAQD----SDEMRCHFELQASGHEKQLEDAQHFISVMQEQREREFIELQRRHEEEVQFLMSQLQRLN-ESRNNSASFLEKKIKGLEKDLYFYKSKFRQGK 3840
E ED+++ L+ S++ + K + + K++++ L + I KE LI E+ T N+ K++ Y K+ KL+ + +++K EL E QK++ +LEN D S D++ L+ +++KK+ + ++ +Q+ + +K L E+R +LE + K + R+L+ E +K+ + + +++++ +IKE++LKT Q++ LK K E++ K R G + ++ ++ ++++ WL+ E+EK+ +Q++++E LE L+ R++ + KKEAL+ EK LE KK +SS L+ D +IS +++ +E+E+S+ ++VQ ++E++ VE L + KD+L ++ +D+ + G L+ EE L +L E IEA+E A++Y+N+ I+ +Q +L A R +L+ + LS E + +L ++F K++ LR++ + ++EM+ L+ ++LE A + + Q +R Q+ HE+++Q L+ + + E + E KI+ LEKDLYFYK R K
Sbjct: 692 ENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIK---TGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLS---DVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTG-QEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSE---KNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKV-LERDNMVRELESALDHLKL---QCDRRLTLQQKEHEQKMQLLLHHFKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHK 1221 The following BLAST results are available for this feature:
BLAST of TCONS_00019174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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