TCONS_00019100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019100
Unique NameTCONS_00019100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019100 ID=TCONS_00019100|Name=TCONS_00019100|organism=Clytia hemisphaerica|type=transcript|length=532bp
TTCAGACACAGAGGAAGAAGAATGATCttgaatttacaaaaagattAAGT
GGGAATAAGCAGCACAAACGGTTATTGGTGCCATGCCAATGTGGCAAAGC
GCATGAGTACCTTTACCAGGGGTTTATAAACTTTGAAACAGTCAAAACTG
TGACAGAGGAAGATTTTCACCAAAAATACAAACACCTCCCTTTGGACACG
CTAGAGAAAAAATaataTACGTATGGTACGGTGATTTTTGGAACAGTACG
AAAACCGATGTATGTTTAATTTGATGGAATGGATTTGCCCGAAAATATCA
TTTGTCAAATTGATATCTCAAAAACTTCACATTCTTACTTACTTTATTAC
CTGAATCTTAAACAATTTTAATCATAATTTGTTCGTACTAAGAATGAGTT
ATATGTATTCTCATGCAAagtttatacttctagactatgtATGTTTAAAT
ATTTGTATATTTTGTCGATCTTTTTATTTCTTACATCGTTTTCTATCGAA
TTCTTTATAATgaaatgaaatcttttttttta
Run BLAST on NCBI

transcript from alignment at sc0000319:298483..300067+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019100 ID=TCONS_00019100|Name=TCONS_00019100|organism=Clytia hemisphaerica|type=transcript|length=1585bp|location=Sequence derived from alignment at sc0000319:298483..300067+ (Clytia hemisphaerica)
TTCAGACACAGAGGAAGAAGAATGATCttgaatttacaaaaagattAAGT
GGGAATAAGGTAACAATTGTTTTATTATGAAAATCATTTGgggttaaaat
ttgaaatctttatatccctattttcaaattatttgcgAAATATTATCAAG
TACGTGAAACGTGAAACCATTTTTCTAATAGGGGTATTAAAGTGTCAAAA
AGATGTGCCGTGTTTCTATCTTTAACCATAACTTTCCAAGGTtgatatcg
ttggaaagatatttaaatGCGCTGAATTTTCCACTCATttatctttcaaa
atttgttcaagaaagtgaaacaaaatgaaaaagaaaaaaacttcttgtag
aataacACCCCTCGGTTTGATTGATAAATCGGAATATGATTTattataaa
ataatttattcTCATTTATCACCTGCGATTTCAGCAGCACAAACGGTTAT
TGGTGCCATGCCAATGTGGCAAAGCGCATGAGTACCTTTACCAGGGTAAG
ATAGTCTTATTTATGGATCCCAATCTCGTCCATGTGTGCTTTAGTGCTAT
TTAATGGACGCAGAGAATACACAGGTATTTTCAATACAATACGTTCCTCA
GCAATGTAGATTATTGCTTGACAGTTCATATATgtcatatatttttttat
gggTAGCATTATCAATACAAATTCTAAGAATTTCTCTCCAACTACTACGT
ACTTCATTTGGAAATTATAGGTTTCATACATAgagtttttctttgcttat
atttcaaattcattaaaaacTCTTGTTTGTAGAGGGTTTATAAACTTTGA
AACAGTCAAAACTGTGACAGAGGAAGATTTTCACCAAAGTAAGTCCAAAC
CACATTGTTCCTGTAAATTTGAACTGTCAGAAAAATGCATAGTACTGCAG
TCGACTTTTTGGAACAATAATAACCTGTGTGATAGCTTGCTTATCAGTAA
TCGGATGTAAAGGATTTTAGTTGTATAGAATTCAGATCAAAATATTGGGA
ATATATAATCATCTCTTTCTTATTTCAGAATACAAACACCTCCCTTTGGA
CACGCTAGAGAAAAAATGTAAGTAAACAATCGTTTTATTTAAATGGGCTC
TACCCCGAAAGCTAAGATTTCACCTAATTAAAAACCAATCagaaattttt
ctcttctttttgttAGGACATATCCGTCAACCTAGGCACCAAAGACGTTT
TTTGAAAACTCGTGAAGTAATGTGTTCTTCTTATATTTATCTTATTATAC
TtttcaaattcttcagaataTACGTATGGTACGGTGATTTTTGGAACAGT
ACGAAAACCGATGTATGTTTAATTTGATGGAATGGATTTGCCCGAAAATA
TCATTTGTCAAATTGATATCTCAAAAACTTCACATTCTTACTTACTTTAT
TACCTGAATCTTAAACAATTTTAATCATAATTTGTTCGTACTAAGAATGA
GTTATATGTATTCTCATGCAAagtttatacttctagactatgtATGTTTA
AATATTTGTATATTTTGTCGATCTTTTTATTTCTTACATCGTTTTCTATC
GAATTCTTTATAATgaaatgaaatcttttttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010712XLOC_010712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019100-exon-sc0000319-1491911889:298483..298541TCONS_00019100-exon-sc0000319-1491911889:298483..298541Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1510915933:298483..298541TCONS_00019100-exon-sc0000319-1510915933:298483..298541Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1575043694:298483..298541TCONS_00019100-exon-sc0000319-1575043694:298483..298541Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1491911889:298917..298977TCONS_00019100-exon-sc0000319-1491911889:298917..298977Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1510915933:298917..298977TCONS_00019100-exon-sc0000319-1510915933:298917..298977Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1575043694:298917..298977TCONS_00019100-exon-sc0000319-1575043694:298917..298977Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1491911889:299267..299320TCONS_00019100-exon-sc0000319-1491911889:299267..299320Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1510915933:299267..299320TCONS_00019100-exon-sc0000319-1510915933:299267..299320Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1575043694:299267..299320TCONS_00019100-exon-sc0000319-1575043694:299267..299320Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1491911889:299511..299549TCONS_00019100-exon-sc0000319-1491911889:299511..299549Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1510915933:299511..299549TCONS_00019100-exon-sc0000319-1510915933:299511..299549Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1575043694:299511..299549TCONS_00019100-exon-sc0000319-1575043694:299511..299549Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1491911889:299749..300067TCONS_00019100-exon-sc0000319-1491911889:299749..300067Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1510915933:299749..300067TCONS_00019100-exon-sc0000319-1510915933:299749..300067Clytia hemisphaericaexon
TCONS_00019100-exon-sc0000319-1575043694:299749..300067TCONS_00019100-exon-sc0000319-1575043694:299749..300067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:298483..300067 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4813	14.0314	14.8493	12.8614	1.99349	1.57528	4.37765	1.77923	2.2324	2.09045	5.04386	1.33921	3.90146	2.53107	2.49479	2.37954	2.55905	3.0425	0.583802	1.344	3.50396	2.11168	5.9191	6.41179	3.41992	4.31518	5.12074	5.14352	3.04775	2.50373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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