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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019098 ID=TCONS_00019098|Name=TCONS_00019098|organism=Clytia hemisphaerica|type=transcript|length=1263bp
AGATGGACATTCTTTTGTTTAATCCGAGACAGAAAGTTCATAGCATCAAA
TACAATGGAAAACAAAGTAACAATAGTATTACGACTTATACGTTCTTTTG
AACATAGAACAATAAGAAATGTTGTGTATCACGATATAGATTTGGATCTG
TTGACATCGGAATTTATCAACTTTGTTAAAACAGACCTTAAAACAAAAAC
TTCACTACCGCCACCTTTTCGTACCTTCAAATATGACACAATGAAAGTTC
AACACAAGGCTTTTGGCTCAAAGACAAGTGATCCTGTCATTAATACATTT
AATGATGATGAACTTATTCTTAATATGGAGAAAAGTTTGAGGGATAATGG
TATTGTAAATGAAACAGAAATCTCCTTTTTTGTGTTGGATGATTATCGCA
AGTATCAGAAAAATCCGCAAATTGCTTGGTGATGAGAATCGTAACGATGT
AAAGGGTTtgcttttgtaatttcttcaTTGTGTTGATTTTTAAAACACGC
TGTGTGGATAATACAGATAAATGAGACTTGGTTGGTAAAATGTATGGTTA
TGGCGCATTTACCAGAATATTATTGAATGAGATTCCCAGAGGCTTGCCCA
AAcacaatcaaattttttcaactcCTCCAATGTTTCCAGGCTTTTCACAA
TGATTAGTCTTTTGGGAAGTTGTTTAACCGGAAACGACAGTTTTTAGAAG
ATGATCCTTCTTTTACAACAAAGTTGGCACTGCTTGAGATTCCAGAATAG
CTTGTCTTTTTGACCCAACTTTCATATATTTTAGAAACTTGCTTTAATTT
TACCTTTACGTACACACAATACATTGACATTTAAATACATTGATTTATTT
GTCATATAGAATATAGAATTGGACTTGTAATCGGACTATCCCAAAATAGC
TTTTTCCTCAAGTTTTTTATCTGTATCAGGTATAAAAATTTATACTGCAG
GGATTTTATGGCTTAGACTTTATGGCTTAGACTTTCTCTTTTCAATCATT
TATTTCAGTACCCTTAAGTCTCTATTAAAACTGCAAATGCCTTTTCTAAT
TATCGCACAATTTTGTGGAATTTATTTTTGGCaaatcaagaatattttca
aatttggcgAAACAAAAAATAGCGAATGACCCATTGTTTTGGTTAGTTGA
AAGAggttttttcatgaaaatctaGGCAAAGACgaaatataatttcaaat
ttgtaaataactGATTTTGTTGAATAACCATAAAATCCTAATTTGGAAGG
AGGTGGGATAAGT Run BLAST on NCBI protein sequence of TCONS_00019098-protein >TCONS_00019098-protein ID=TCONS_00019098-protein|Name=TCONS_00019098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
RWTFFCLIRDRKFIASNTMENKVTIVLRLIRSFEHRTIRNVVYHDIDLDL
LTSEFINFVKTDLKTKTSLPPPFRTFKYDTMKVQHKAFGSKTSDPVINTF
NDDELILNMEKSLRDNGIVNETEISFFVLDDYRKYQKNPQIAW Run BLAST on NCBI transcript from alignment at sc0000319:290509..294668+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019098 ID=TCONS_00019098|Name=TCONS_00019098|organism=Clytia hemisphaerica|type=transcript|length=4160bp|location=Sequence derived from alignment at sc0000319:290509..294668+ (Clytia hemisphaerica)
AGATGGACATTCTTTTGTTTAATCCGAGACAGAAAGGTAGATATGTCTTA
TTTTTGTAATTACTGTTGTTAATCAATAGCTTGCAACTGTATATCACTAT
TTAGATTCTTGTTCTTTTAGACAAACTGACAAATCTAGACCTGACTCTTC
TTATGTTGTTTTGGGCAGGTAATTTCTGAATTTGGCGAAGGGAAGTCAGG
TATTAGTTTACCGTTACCCGCCTGTGTTTGAGCTACcgcttaaaaatttt
cattattttaaaaaatttcattattactatttttttcagtccaaatatGA
AAAACATCAATACATGACTTACCAATGGCTCTGAACGGTATGAAGTCATC
TCCGCGTACGCATTGTCTTGCGAAGTGTTCATGCAACTGATTTCATCCAC
ATGCTTTGTATCATCGCCACTTGTGCGCCCAATGTGAAACAAAGGATACG
AGCGCGCGCACCTCAAAAAGAAGCGTTTTTATCCTCAGGTAATATATATT
GAAGAGGTATAACTTAATAGTATAGACACTTGCAGCTTGGGAGAGTTTAT
ggtaaaataatgaataatgaataatgaaattttgccccatcgaattttga
atttgttgtAACGGTAAACTAATACCTGATTTCCCTTCGCCTTACATGCA
CCATTTTGGGTCGGAGgtgtcacagtgttcaaaggtcataatttgaaacc
acccatAACACGCGGTTGTCTTtaggctgctggctggctggcagtttctt
CCCAAAAATGGATGATAGAGGAAACCCAAANTTGCACACTTGAAGAGCCT
GCCTGCCTGATCATAAATATAAACCTttataaaaaggctgtttttaccaa
aagttAACTGTTTTCAGGAAGGGCAGCATCCTATGACCGAATGTTAAAAG
GGCATGAAAGATGACCTGATCATTGAAGCTCTAACTAACAGTGTAGCTct
aaaaagctctaaaacagcatttAATAAtactcaggtgagttaaggaaagt
ccaaaacctatttcccgatttttccaccacttcccattgttccttaactc
ttgtatatagctcaaaagaagcgtattaatgagaggatttcggaaagtgc
tgggccgaaatttaaattaagccaatctcaagatatcgaccaaaaactga
ttttgacgttatgaaatacatcgaaaaaacacgtcataagtaagattcaa
atgacgtcattattgaaaacagcgataacttcaagtctattaatgcaatc
aacacaaaattttgactggagacgtagattaacgattctaaatatttgtt
gagaaattttcaaatttttttgatgaagtCATTTGCTGTcggtaaaaact
aaaatacgtcaaataatgatgacatcatcaaaaaatttcaactttttgtc
atgcattatttcaaaatgaacaatcaacgtctccagtcgaaatttggtgt
taattgtagtaataaaatcaaagttattgctgttttaaaaaacgatgtca
tttaacttgtctttttgacgtgttttttcgacgtatttcctaacgtcaaa
ttcagtttttggccgatatcttgagattggcttaatttaaattttcggcc
cggcactttccgaaatcccctcattaatacgcttcttttgagctatatac
gagagttaaggaacaatgggaagcgaAGAAATAGGTTTCGGACtttcctt
aactcacctgagcatgaaaaccagaatatgattcttcaatgggaatcaaa
attataaagtgcacttacaaacatcaatttgtgagatctaacaaaattaa
taaccgcactgtcatcattgacaataaaacaaacaattttctgtcaagag
tcttgtaaacattccatcaacttccatcgaaatgatctatcacagctcag
tctaccatttttagcgcggtccgaggattgagccgagaacgctccccgag
ctcctgcgcgggtgaaaaacttcaatatgtcaatcatttttccaagcgaa
gagtacgcatagcgattctagctttacgatagtgccgcggatcatcaatg
gatagtattcaattatcattatccctttattttcattcctagaacttaat
tgcaaaaaaaaggaaaaatagaaaagttgtattttttactgctctattca
catagtgaatttgaaagatcttctatgtggcgcttttttgcaaacttcaa
aaaactgatttttgtcccgcctttgcgggattttggctttagtgcttgag
tgcagcatagggtacaaagtccaaatatacgtttcccgtaatttttgtat
gaagagttaggtctacactgactaATAGTttagacagttagtcacactag
gaaaagctttcagaaaaaacaacatcagtcatctacaggatgtatNCCAC
ACTAggaaaagctttcaaaaaaacaacatcagtcatctacaggatgtatt
tgcaacaacaaggatgagaggtacctgaatcaagttcgcaagacatcagt
catctacaggatgtatttgcaacaacaaggatgagagttacctgaatcaa
gttcgcaagacatcagtcatctacaggatgtatttgcaacaacaaggatg
agagttacctgaatcaagttcgcaagacaattaattaaaacttgaaagtt
tgaaacaaaataaaacctgcagcagccaaaatcaaccaaccaaaatttgt
cattcaattcccgagacagctctaaggccttgtttatatgataaagttaa
aacaattccgcacatgtaaatcaAGCTATTGTTAGATTTACTTGAAGATT
CTAGAACAtgaagactttttctttttgaaaaatctttttagaatttaaat
atTGTTGCTTTGAAATTTACGTCCTTTTTACCAATGAAATCATAATTAAT
ACTGATGAAAAGCAATCATTACTTTTTATTAAGTTCATAGCATCAAATAC
AATGGAAAACAAAGTAACAATAGTATTACGACTTATACGTTCTTTTGAAC
ATAGAACAATAAGAAATGTTGTGTATCACGATATAGATTTGGATCTGTTG
ACATCGGAATTTATCAACTTTGTTAAAACAGACCTTAAAACAAAAACTTC
ACTACCGCCACCTTTTCGTACCTTCAAATATGACACAATGAAAGTTCAAC
ACAAGGCTTTTGGCTCAAAGACAAGTGATCCTGTCATTAATACATTTAAT
GATGATGAACTTATTCTTAATATGGAGAAAAGTTTGAGGGATAATGGTAT
TGTAAATGAAACAGAAATCTCCTTTTTTGTGTTGGATGATTATCGCAAGT
ATCAGAAAAATCCGCAAATTGCTTGGTGATGAGAATCGTAACGATGTAAA
GGGTTtgcttttgtaatttcttcaTTGTGTTGATTTTTAAAACACGCTGT
GTGGATAATACAGATAAATGAGACTTGGTTGGTAAAATGTATGGTTATGG
CGCATTTACCAGAATATTATTGAATGAGATTCCCAGAGGCTTGCCCAAAc
acaatcaaattttttcaactcCTCCAATGTTTCCAGGCTTTTCACAATGA
TTAGTCTTTTGGGAAGTTGTTTAACCGGAAACGACAGTTTTTAGAAGATG
ATCCTTCTTTTACAACAAAGTTGGCACTGCTTGAGATTCCAGAATAGCTT
GTCTTTTTGACCCAACTTTCATATATTTTAGAAACTTGCTTTAATTTTAC
CTTTACGTACACACAATACATTGACATTTAAATACATTGATTTATTTGTC
ATATAGAATATAGAATTGGACTTGTAATCGGACTATCCCAAAATAGCTTT
TTCCTCAAGTTTTTTATCTGTATCAGGTATAAAAATTTATACTGCAGGGA
TTTTATGGCTTAGACTTTATGGCTTAGACTTTCTCTTTTCAATCATTTAT
TTCAGTACCCTTAAGTCTCTATTAAAACTGCAAATGCCTTTTCTAATTAT
CGCACAATTTTGTGGAATTTATTTTTGGCaaatcaagaatattttcaaat
ttggcgAAACAAAAAATAGCGAATGACCCATTGTTTTGGTTAGTTGAAAG
AggttttttcatgaaaatctaGGCAAAGACgaaatataatttcaaatttg
taaataactGATTTTGTTGAATAACCATAAAATCCTAATTTGGAAGGAGG
TGGGATAAGT Coding sequence (CDS) from alignment at sc0000319:290509..294668+ >TCONS_00019098 ID=TCONS_00019098|Name=TCONS_00019098|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0000319:290509..294668+ (Clytia hemisphaerica)
AGATGGACATTCTTTTGTTTAATCCGAGACAGAAAGTTCATAGCATCAAA
TACAATGGAAAACAAAGTAACAATAGTATTACGACTTATACGTTCTTTTG
AACATAGAACAATAAGAAATGTTGTGTATCACGATATAGATTTGGATCTG
TTGACATCGGAATTTATCAACTTTGTTAAAACAGACCTTAAAACAAAAAC
TTCACTACCGCCACCTTTTCGTACCTTCAAATATGACACAATGAAAGTTC
AACACAAGGCTTTTGGCTCAAAGACAAGTGATCCTGTCATTAATACATTT
AATGATGATGAACTTATTCTTAATATGGAGAAAAGTTTGAGGGATAATGG
TATTGTAAATGAAACAGAAATCTCCTTTTTTGTGTTGGATGATTATCGCA
AGTATCAGAAAAATCCGCAAATTGCTTGGTGAAGATGGACATTCTTTTGT
TTAATCCGAGACAGAAAGTTCATAGCATCAAATACAATGGAAAACAAAGT
AACAATAGTATTACGACTTATACGTTCTTTTGAACATAGAACAATAAGAA
ATGTTGTGTATCACGATATAGATTTGGATCTGTTGACATCGGAATTTATC
AACTTTGTTAAAACAGACCTTAAAACAAAAACTTCACTACCGCCACCTTT
TCGTACCTTCAAATATGACACAATGAAAGTTCAACACAAGGCTTTTGGCT
CAAAGACAAGTGATCCTGTCATTAATACATTTAATGATGATGAACTTATT
CTTAATATGGAGAAAAGTTTGAGGGATAATGGTATTGTAAATGAAACAGA
AATCTCCTTTTTTGTGTTGGATGATTATCGCAAGTATCAGAAAAATCCGC
AAATTGCTTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019098-exon-sc0000319-1491911889:290509..290544 | TCONS_00019098-exon-sc0000319-1491911889:290509..290544 | Clytia hemisphaerica | exon |
| TCONS_00019098-exon-sc0000319-1510915933:290509..290544 | TCONS_00019098-exon-sc0000319-1510915933:290509..290544 | Clytia hemisphaerica | exon |
| TCONS_00019098-exon-sc0000319-1575043694:290509..290544 | TCONS_00019098-exon-sc0000319-1575043694:290509..290544 | Clytia hemisphaerica | exon |
| TCONS_00019098-exon-sc0000319-1491911889:293442..294668 | TCONS_00019098-exon-sc0000319-1491911889:293442..294668 | Clytia hemisphaerica | exon |
| TCONS_00019098-exon-sc0000319-1510915933:293442..294668 | TCONS_00019098-exon-sc0000319-1510915933:293442..294668 | Clytia hemisphaerica | exon |
| TCONS_00019098-exon-sc0000319-1575043694:293442..294668 | TCONS_00019098-exon-sc0000319-1575043694:293442..294668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:290509..294668 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018794 | UPF0538 |
Blast
BLAST of TCONS_00019098 vs. Swiss-Prot (Human)
Match: CB076 (UPF0538 protein C2orf76 OS=Homo sapiens GN=C2orf76 PE=1 SV=3) HSP 1 Score: 130.954 bits (328), Expect = 4.608e-36 Identity = 59/123 (47.97%), Postives = 88/123 (71.54%), Query Frame = 1
Query: 61 NKVTIVLRLIRSFEHRTIRNVVYHDIDLDLLTSEFINFVKTDLKTKTSLPPPFRTFKYDTMKVQHKAFGSKTSDPVINTFNDDELILNMEKSLRDNGIVNETEISFFVLDDYRKYQKNPQIAW 429
+VTI +RLIRSFEHR + VVYH ++LD EFI F+K D+ +T+LPPPFR +KYD +K+ H+A SKT++ V++ +D+ L+L + +L+ GI +ETEI+FF +DY+ Y+ NP +W
Sbjct: 4 GEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
The following BLAST results are available for this feature:
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