TCONS_00019089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019089
Unique NameTCONS_00019089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019089 ID=TCONS_00019089|Name=TCONS_00019089|organism=Clytia hemisphaerica|type=transcript|length=3807bp
TATAATAGTTAGAAGTCCATAGGGTTCTGAGGGGTAGCCTTTTGAACTTT
ATCGGGAGAAATTATAATTCAATCGATCCCAACTTGATTGATCAAGAATA
CAGTTTTTTTATGGATCATCACATATCTTGAGTCATATTTGTAGAGTAAC
GAAGGAAGTGTTCCCAAGGTCAAAAGTATGATTAATAATGTTAGGTGTTG
GGAAGCTAATCAACTTTAACAACCATGGCGATATTAcgtatttcaaaaca
aataaacaattAAATCCCAACCCTTATCCTAATATAGATAGAAAAGATGA
CCTGGTGTAGAATAAACATCTTTGATAGTCTAAATAAACATATAAGGACA
GAGGGAGAGACATACATAAAAAGCTGTCGTTTTGTGTCAACTAACTTCAC
TTGCGACGTGTCTAGATTGAAATCGCTTGtgaacaaaacttatagaacaa
tttttcaagaTGCAAAAAGCTAAAGAATATGACTGGAAGGAATCCAACAT
GGCCCTCTTTGGCTCTGACACTGAAAAGAAAGTCAAGAAGGAATCGGCAG
AGAGTGAACCAGCATGGCAAGGAGCTGGTGAAGAAGTTGGTTTGAAAATC
TGGAGAATCGTCAAATTTGAGgttacaggttggGAAGATGACCAATACGG
TGAATTTTATAACGGAGATTCTTACATTATCCTTAACACTTACAAAGAGC
CTGAAGGTGATGAACTCAAACATGACGTTCATTTCTGGATCGGAAAATAT
TCCACTCAAGATGAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGA
CACCTTTTTGGATGATAAACCAGTACAACATCGCGAAGTTCAAGGACACG
AATCTTCACTCTTCAAATCGTATTTTGATTCCATGAGTTTGTTGGAAGGA
GGAGCTGATACTGGCTTTAAACGCGTCTTACCAGAAGCTTATGAACCAAG
ATTGTTTGTTGTCCAAAAAGGAGCTAACAAGAAGatcacttgctcacaaa
tcgaATTGAAACGTGGCAATTTGAGCTCTGATAATGTCTACATCATTGAT
AATGGTTTGAACGTTTACCAATGGAATGGATCAGACTGCAGCCCAGATGA
GAAATTCAAGGCAGCCACAGAAGTTGACAAAATTGAAGGCAAACGATCAG
GTTGCAAAACACACACCCTCGAAGAGAGAAGCTGTGGAGATAACCACCCT
GCCATCCAAATTCTTGGCCCTGGTAAAAGTGAAGATGCTGGAGAGATGCC
AGAAGGAGAGAAAAAGGTGTTGAAAATCAAGGACGGTGAAGATGTTGAAG
AAGTAGCAAGTGGTGATGACATTTCCAAAGATCAACTCCAATCTGACGAT
GTCTACATCATTAACACTGGAGATCATGTTTATTGTTGGGTCGGTAAAGG
AGCCAGCGTTGACGAACGAAAGAATGGAATTCCTTATGCTTGCAATTACT
TGTCCAAAACCGAAACACCATGGCTTCCAGTCAGCGTGGTCGCTGAGGGA
TCAGAGCCAAATGTCGCTTTCTTCGCTTGAGATGAGAAATGAGAAATTTC
GAATGAATTTTGCGATAAATTGTACATTGTTTATATGATTTTTCGAATCT
GTATTTATTGAATTGTAATATTTGACCAAATAAATTTCCTTATTGGAAAC
AGCCAGCTCAAAATCTATTGCTTGAGAGTTTCCATTTTCTAGTTAGATAG
AATTAAATTCCAGTCATTCATCataatttattataaaaaaccccggtctg
gcaatgtattgttttagctttttgttcaattttcttttgttacaaacaaa
agacaagttgcaatttgcatactttttgatcggTATTGATCACGTTACta
aaatctcctcttgggattggtctattttctaatcacatgatcaaaaagat
tgcaaaataaatcgattgtggtacgtaagctccatattttaacaattttc
atCTTGGTCTCTTATTCCCATTGGGAAAACATCGAATTCCTAATAGCTGT
aattcttaaaataaaataaaaaaatcccgATTTCGAAATTAAACGGGGAA
TGATATTTGTTCGAAGTAAAAGATTGACAGGGGACTTGAACAAGTTCGAA
ATATGGATAAAAGTTCGATTAATATAACTTCAAATAAGCGAGACTTTGCC
ACTGGAATCTTTAGCTCGGCTGAAATGAAGttgtatcaaaaatattttta
ttgaataAGTGAACTGtcgttcttttttattttatttttcttctggACAG
AGTATATGATacattaacattttcaaataaataaagtGGTATTCAAAAAT
TATACAAGATTTTTtgagggaaaatgaaaaaattagttAAAAGTCAATAA
TTTAGAactgaaaatgttttaaactgaTTAAGTCGAGAAAAGATTAACCC
ATTGAGAACTTTCTCCACGCTGGAGTAAATTTCGTGATTTCGTAAAAAGC
TATATGATGAAGATTGGTGataatttctttttcgtttAATTGAAGAAAGC
GACATCTTTGGGTTCAGCTCCTTCAGCAACCACGCTGACTGGAAGCCATG
GTGTTTCGGTTTTGGACAAGTAATTGCAAGCGTATGGAATTCCATTCTTT
CGTTCGTCAACGCTGGCTCCTTTGCCGACCCAACAATAAACGTGATCTCC
AGTGTTCACAATGTAAactaaaatgaagaaaaaatgtaatgatacaaaat
caaaatcagtAAAACATGTTAAAATGTTTTGGAAAACCTAAGTCTAGGAA
ATTCAGATAGATGACCCATCAAGTGTACTAAACGTGAGGTTAAAGTCAAA
ATGCACTGCTCAACTTACCGTCATCAGATTGGAGTGCATCTTTGGAAATG
TCATCACCACTTGATACTTCTTCAACATCTTCACCATCCTTGATTTTCAA
CACCTGTAAAAGCAATAGAAAAGACATGTGAAGACAAATCGCAATCCCAA
TCAGCAGGTAATGCTACCATGACTTGCATGCAAAATTGATATGGTAATCA
CATGAACTGTCATAAAATCGCAGATTCAGCTCTCAGTTTAAGCTCTATTT
GGAGAATACCAAGATGATGTACTCATAATAGGCGTTGGTGCTAAATTTGA
ATTGCTCAGAAGCGTTTTACGTTGAGAGCAATGTTCGTTTGGATGGTAGG
GAAAATAAAGCATTCGTAGATTACCTTTTTCTCGCCTTGTGGGTCCTCTG
CCTTATCCTTGCTTTTTCCAGGGCCAAGGATTTGAACAGCAGGATGGTTA
TCAGAACAACTTCTTTCTTCAACGGTGTGTGTTTTACATCCTTTGCGTTT
CCCTTCAATTTTGTCGACTTCTTGGGCAGCTTTGAATTTTTCATCTGCAC
TGCATTTAGATCCGTTCCACTACGAAGAGTTGATAAAAGAAAACAGTGTT
CTAACTGATATATTGTAATGATCACTGTTTTAAGCAGAGAACGCAGAGAT
GGATTTTTAATTCCTTTGTAATTGTCCCTAAGAAATTTCCTAATCAACCC
TGTTGGCCGAGTTTCATGCTAAGAACTACATCAATTGCAGTTATATTAAA
ATCTGGAGTAATATTTTTCCTACGAAAAGGTTGCAATAAGAGATAACTTA
CTTGGTAGATGTTCAATCCGTTATCGATGATAAAGACGTCATCAGATGTC
AAATTTCCTCGTTTCAATGAGACTTGAGTGCATTTGATCTttcgattttc
ttttttgacatggAAGAGTCTTGGCTCATAAGCTTCTGGTAAGACGCGTT
TGAAGCCAGTATCTGCTCCTCCTTTCAAAAGGGTCAATGCTGAagtgaag
aatgaag
Run BLAST on NCBI

protein sequence of TCONS_00019089-protein

>TCONS_00019089-protein ID=TCONS_00019089-protein|Name=TCONS_00019089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MQKAKEYDWKESNMALFGSDTEKKVKKESAESEPAWQGAGEEVGLKIWRI
VKFEVTGWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQ
DEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYFDSMSLLEGGAD
TGFKRVLPEAYEPRLFVVQKGANKKITCSQIELKRGNLSSDNVYIIDNGL
NVYQWNGSDCSPDEKFKAATEVDKIEGKRSGCKTHTLEERSCGDNHPAIQ
ILGPGKSEDAGEMPEGEKKVLKIKDGEDVEEVASGDDISKDQLQSDDVYI
INTGDHVYCWVGKGASVDERKNGIPYACNYLSKTETPWLPVSVVAEGSEP
NVAFFA
Run BLAST on NCBI

transcript from alignment at sc0000319:168409..173983+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019089 ID=TCONS_00019089|Name=TCONS_00019089|organism=Clytia hemisphaerica|type=transcript|length=5575bp|location=Sequence derived from alignment at sc0000319:168409..173983+ (Clytia hemisphaerica)
TATAATAGTTAGAAGTCCATAGGGTTCTGAGGGGTAGCCTTTTGAACTTT
ATCGGGAGAAATTATAATTCAATCGATCCCAACTTGATTGATCAAGAATA
CAGTTTTTTTATGGATCATCACATATCTTGAGTCATATTTGTAGAGTAAC
GAAGGAAGTGTTCCCAAGGTCAAAAGTATGATTAATAATGTTAGGTGTTG
GGAAGCTAATCAACTTTAACAACCATGGCGATATTAcgtatttcaaaaca
aataaacaattAAATCCCAACCCTTATCCTAATATAGATAGAAAAGATGA
CCTGGTGTAGAATAAACATCTTTGATAGTCTAAATAAACATATAAGGACA
GAGGGAGAGACATACATAAAAAGCTGTCGTTTTGTGTCAACTAACTTCAC
TTGCGACGTGTCTAGATTGAAATCGCTTGtgaacaaaacttatagaacaa
tttttcaagaTGCAAAAAGCTAAAGAATATGACTGGAAGGAATCCAACAT
GGCCCTCTTTGGCTCTGACACTGAAAAGAAAGTAAGTTTTGTTTGTGTTT
GCTATACGTATACTTATTAATTTCAATGCACTAGCAAAAAAAGAGGCATT
GTCTAGCAATCCAGAACTCTGTTCCTTTTTCTAAGCAGTAATTTTGCgtc
cgcagtcggaggcgaatCGAAGGTTCCTCTTTCGATGTGTCTACCCAAAG
GTAAGTAAGGGCACCCTTTTCTCTCCCTGGACTGATCCATTTAGAATTGT
TGACTGAGAATCAAGCAGAGatgcatcaagtaccatttttttACTAAGTA
GGAATCTTTCGTATGACCCGGTCAGGGATTGGACCAACGTCCTTGCACAC
CGAACCCGAATAATCTACCTTTGGGTTACGGTAACTCCTTGTTCTAATTG
TGGCTGAGACAGGTTCGTCATCTCtgtttgtttttaatgaatAGCCTGAA
AAAGTAATATTTGACTCAATATTATACAACAAATAACGTCTGAATATTTC
CCAGGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGAGCTG
GTGAAGAAGTTGGTTTGAAAATCTGGAGAATCGTCAAATTTGAGGTAATG
AGATAATACCATTTCTTAATTTATCAATGCTAATAGAGAAGAGTTCATTA
AAACCACAAAAAACGcataataattttttataaatcaaTTGACATGACCA
GATTAGTTTTGTTATAATAAAGTGATGTCTCTCTTTCAATTAATTATAGA
GATAGAAATTACCCGAATAACCTGTTCAGGGCTTCTTAACGAGTGTGATT
CTTTCTGAAAAGCGAAAATGTGAAATAACTCTCAATCCTCATTTTATCTc
tccgcaggttacaggttggGAAGATGACCAATACGGTGAATTTTATAACG
GAGATTCTTACATTATCCTTAACACTTACAAAGAGCCTGAAGGTGATGAA
CTCAAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAAGATGA
ATACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTTTTGGATG
ATAAACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCACTCTTC
AAATCGTATTTTGATTGTAAGTATCCATCGATTATAAACTTTCCTAAATA
TCTACGGCAAAACCTTGTCACTGACTCCCAGATTCAGGAATATTTGCCCT
TatatttcgtccccggtgggaaaactAAAGCACTATCAGCCCCACTagga
aatttattttaattcCATTCCCACTTGAAATCAAATAGAAAAAACTGCTC
CCCAAAACCGTCCCCATTTGATTTTCGATAGAATTATTCGTAACCACTAT
GGGGAAAAGCTCCaccgggctgtgagacaggaatGTAATATACTAGGATT
CTGGACCTAATTGTTTTTAAATGTTCTATACAGATTGATATTCATTTTAC
CTTTCTAGCCATGAGTTTGTTGGAAGGAGGAGCTGATACTGGCTTTAAAC
GCGTCTTACCAGAAGCTTATGAACCAAGATTGTTTGTTGTCCAAAAAGGA
GCTAACAAGAAGatcacttgctcacaaatcgaATTGAAACGTGGCAATTT
GAGCTCTGATAATGTCTACATCATTGATAATGGTTTGAACGTTTACCAAG
TATGCGACGTCATTTTCTGACTCTTTGATATCCCCATACGAATGTTCTAT
TTTTAACTCTAAGTCTCGAAAGAATTTTATGTTGTATTCATCACCATACT
ATATGGAGCAAAGTCGAGGACAGTAAAAacgctgatttaccgtcgtcctc
tgTTTGCCAGGatttagtcaaattagaaccttaaaGTCCCAGCTTACAAC
GTTTACCTAGTGCTCACAACGTCCATACAACGTTATATGAACATCGAatc
aacgttgtgtgtcagctggaaTGGATACTACTAATATAGACAGAGTTTAC
GGTTCTTTTATCACCTTTTGTTTTAATCTAAACTCACTTTTCTCTAGTGG
AATGGATCAGACTGCAGCCCAGATGAGAAATTCAAGGCAGCCACAGAAGT
TGACAAAATTGAAGGCAAACGATCAGGTTGCAAAACACACACCCTCGAAG
AGAGAAGCTGTGGAGATAACCACCCTGCCATCCAAATTCTTGGCCCTGGT
AAAAGTGAAGATGCTGGAGAGATGCCAGAAGGAGAGAAAAAGGTTTGTAA
AAACAATGTAATGAATCGGTGAAATATATACCCCTGTTTCACTTACACAT
GGTAAGGGAAGATGAACTACAGGGTAATTTTGAATCTTATTGTTTACTTT
TGGAGGATTCTTTTAAAGGGGTTTGCTTGACCGTGAATGTTTTTCTGAAT
CTGTTTTAATATCTTTTGGTTTAACAGGTGTTGAAAATCAAGGACGGTGA
AGATGTTGAAGAAGTAGCAAGTGGTGATGACATTTCCAAAGATCAACTCC
AATCTGACGATGGTAAgttaaaaagtatattttttgtAGATGTAACATGA
GAAAACTTGTGGCTTTCTATGTGGTGCGTTTACTTTTCCTATATAAACTT
CAAGAATCTAAGGATATCTTAAAACGATCTATACACACTTCGTCATTGAA
TTTGCTTTTCTTCATTCAGTCTACATCATTAACACTGGAGATCATGTTTA
TTGTTGGGTCGGTAAAGGAGCCAGCGTTGACGAACGAAAGAATGGAATTC
CTTATGCTTGCAATTACTTGTCCAAAACCGAAACACCATGGCTTCCAGTC
AGCGTGGTCGCTGAGGGATCAGAGCCAAATGTCGCTTTCTTCGCTTGAGA
TGAGAAATGAGAAATTTCGAATGAATTTTGCGATAAATTGTACATTGTTT
ATATGATTTTTCGAATCTGTATTTATTGAATTGTAATATTTGACCAAATA
AATTTCCTTATTGGAAACAGCCAGCTCAAAATCTATTGCTTGAGAGTTTC
CATTTTCTAGTTAGATAGAATTAAATTCCAGTCATTCATCataatttatt
ataaaaaaccccggtctggcaatgtattgttttagctttttgttcaattt
tcttttgttacaaacaaaagacaagttgcaatttgcatactttttgatcg
gTATTGATCACGTTACtaaaatctcctcttgggattggtctattttctaa
tcacatgatcaaaaagattgcaaaataaatcgattgtggtacgtaagctc
catattttaacaattttcatCTTGGTCTCTTATTCCCATTGGGAAAACAT
CGAATTCCTAATAGCTGTaattcttaaaataaaataaaaaaatcccgATT
TCGAAATTAAACGGGGAATGATATTTGTTCGAAGTAAAAGATTGACAGGG
GACTTGAACAAGTTCGAAATATGGATAAAAGTTCGATTAATATAACTTCA
AATAAGCGAGACTTTGCCACTGGAATCTTTAGCTCGGCTGAAATGAAGtt
gtatcaaaaatatttttattgaataAGTGAACTGtcgttcttttttattt
tatttttcttctggACAGAGTATATGATacattaacattttcaaataaat
aaagtGGTATTCAAAAATTATACAAGATTTTTtgagggaaaatgaaaaaa
ttagttAAAAGTCAATAATTTAGAactgaaaatgttttaaactgaTTAAG
TCGAGAAAAGATTAACCCATTGAGAACTTTCTCCACGCTGGAGTAAATTT
CGTGATTTCGTAAAAAGCTATATGATGAAGATTGGTGataatttcttttt
cgtttAATTGAAGAAAGCGACATCTTTGGGTTCAGCTCCTTCAGCAACCA
CGCTGACTGGAAGCCATGGTGTTTCGGTTTTGGACAAGTAATTGCAAGCG
TATGGAATTCCATTCTTTCGTTCGTCAACGCTGGCTCCTTTGCCGACCCA
ACAATAAACGTGATCTCCAGTGTTCACAATGTAAactaaaatgaagaaaa
aatgtaatgatacaaaatcaaaatcagtAAAACATGTTAAAATGTTTTGG
AAAACCTAAGTCTAGGAAATTCAGATAGATGACCCATCAAGTGTACTAAA
CGTGAGGTTAAAGTCAAAATGCACTGCTCAACTTACCGTCATCAGATTGG
AGTGCATCTTTGGAAATGTCATCACCACTTGATACTTCTTCAACATCTTC
ACCATCCTTGATTTTCAACACCTGTAAAAGCAATAGAAAAGACATGTGAA
GACAAATCGCAATCCCAATCAGCAGGTAATGCTACCATGACTTGCATGCA
AAATTGATATGGTAATCACATGAACTGTCATAAAATCGCAGATTCAGCTC
TCAGTTTAAGCTCTATTTGGAGAATACCAAGATGATGTACTCATAATAGG
CGTTGGTGCTAAATTTGAATTGCTCAGAAGCGTTTTACGTTGAGAGCAAT
GTTCGTTTGGATGGTAGGGAAAATAAAGCATTCGTAGATTACCTTTTTCT
CGCCTTGTGGGTCCTCTGCCTTATCCTTGCTTTTTCCAGGGCCAAGGATT
TGAACAGCAGGATGGTTATCAGAACAACTTCTTTCTTCAACGGTGTGTGT
TTTACATCCTTTGCGTTTCCCTTCAATTTTGTCGACTTCTTGGGCAGCTT
TGAATTTTTCATCTGCACTGCATTTAGATCCGTTCCACTACGAAGAGTTG
ATAAAAGAAAACAGTGTTCTAACTGATATATTGTAATGATCACTGTTTTA
AGCAGAGAACGCAGAGATGGATTTTTAATTCCTTTGTAATTGTCCCTAAG
AAATTTCCTAATCAACCCTGTTGGCCGAGTTTCATGCTAAGAACTACATC
AATTGCAGTTATATTAAAATCTGGAGTAATATTTTTCCTACGAAAAGGTT
GCAATAAGAGATAACTTACTTGGTAGATGTTCAATCCGTTATCGATGATA
AAGACGTCATCAGATGTCAAATTTCCTCGTTTCAATGAGACTTGAGTGCA
TTTGATCTttcgattttcttttttgacatggAAGAGTCTTGGCTCATAAG
CTTCTGGTAAGACGCGTTTGAAGCCAGTATCTGCTCCTCCTTTCAAAAGG
GTCAATGCTGAagtgaagaatgaag

Coding sequence (CDS) from alignment at sc0000319:168409..173983+

>TCONS_00019089 ID=TCONS_00019089|Name=TCONS_00019089|organism=Clytia hemisphaerica|type=CDS|length=7497bp|location=Sequence derived from alignment at sc0000319:168409..173983+ (Clytia hemisphaerica)
aTGCAAAAAGCTAAAGAATATGACTGGAAGGAATCCAACATGGCCCTCTT
TGGCTCTGACACTGAAAAGAAAGTCAAGAAGGAATCGGCAGAGAGTGAAC
CAGCATGGCAAGGAGCTGGTGAAGAAGTTGGTTTGAAAATCTGGAGAATC
GTCAAATTTGAGgttacaggttggGAAGATGACCAATACGGTGAATTTTA
TAACGGAGATTCTTACATTATCCTTAACACTTACAAAGAGCCTGAAGGTG
ATGAACTCAAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAA
GATGAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTTTT
GGATGATAAACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCAC
TCTTCAAATCGTATTTTGATTCCATGAGTTTGTTGGAAGGAGGAGCTGAT
ACTGGCTTTAAACGCGTCTTACCAGAAGCTTATGAACCAAGATTGTTTGT
TGTCCAAAAAGGAGCTAACAAGAAGatcacttgctcacaaatcgaATTGA
AACGTGGCAATTTGAGCTCTGATAATGTCTACATCATTGATAATGGTTTG
AACGTTTACCAATGGAATGGATCAGACTGCAGCCCAGATGAGAAATTCAA
GGCAGCCACAGAAGTTGACAAAATTGAAGGCAAACGATCAGGTTGCAAAA
CACACACCCTCGAAGAGAGAAGCTGTGGAGATAACCACCCTGCCATCCAA
ATTCTTGGCCCTGGTAAAAGTGAAGATGCTGGAGAGATGCCAGAAGGAGA
GAAAAAGGTGTTGAAAATCAAGGACGGTGAAGATGTTGAAGAAGTAGCAA
GTGGTGATGACATTTCCAAAGATCAACTCCAATCTGACGATGTCTACATC
ATTAACACTGGAGATCATGTTTATTGTTGGGTCGGTAAAGGAGCCAGCGT
TGACGAACGAAAGAATGGAATTCCTTATGCTTGCAATTACTTGTCCAAAA
CCGAAACACCATGGCTTCCAGTCAGCGTGGTCGCTGAGGGATCAGAGCCA
AATGTCGCTTTCTTCGCTTGAaTGCAAAAAGCTAAAGAATATGACTGGAA
GGAATCCAACATGGCCCTCTTTGGCTCTGACACTGAAAAGAAAGTCAAGA
AGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGAGCTGGTGAAGAAGTT
GGTTTGAAAATCTGGAGAATCGTCAAATTTGAGgttacaggttggGAAGA
TGACCAATACGGTGAATTTTATAACGGAGATTCTTACATTATCCTTAACA
CTTACAAAGAGCCTGAAGGTGATGAACTCAAACATGACGTTCATTTCTGG
ATCGGAAAATATTCCACTCAAGATGAATACGGTACAGCAGCTTACAAAAC
TGTTGAATTGGACACCTTTTTGGATGATAAACCAGTACAACATCGCGAAG
TTCAAGGACACGAATCTTCACTCTTCAAATCGTATTTTGATTCCATGAGT
TTGTTGGAAGGAGGAGCTGATACTGGCTTTAAACGCGTCTTACCAGAAGC
TTATGAACCAAGATTGTTTGTTGTCCAAAAAGGAGCTAACAAGAAGatca
cttgctcacaaatcgaATTGAAACGTGGCAATTTGAGCTCTGATAATGTC
TACATCATTGATAATGGTTTGAACGTTTACCAATGGAATGGATCAGACTG
CAGCCCAGATGAGAAATTCAAGGCAGCCACAGAAGTTGACAAAATTGAAG
GCAAACGATCAGGTTGCAAAACACACACCCTCGAAGAGAGAAGCTGTGGA
GATAACCACCCTGCCATCCAAATTCTTGGCCCTGGTAAAAGTGAAGATGC
TGGAGAGATGCCAGAAGGAGAGAAAAAGGTGTTGAAAATCAAGGACGGTG
AAGATGTTGAAGAAGTAGCAAGTGGTGATGACATTTCCAAAGATCAACTC
CAATCTGACGATGTCTACATCATTAACACTGGAGATCATGTTTATTGTTG
GGTCGGTAAAGGAGCCAGCGTTGACGAACGAAAGAATGGAATTCCTTATG
CTTGCAATTACTTGTCCAAAACCGAAACACCATGGCTTCCAGTCAGCGTG
GTCGCTGAGGGATCAGAGCCAAATGTCGCTTTCTTCGCTTGAaTGCAAAA
AGCTAAAGAATATGACTGGAAGGAATCCAACATGGCCCTCTTTGGCTCTG
ACACTGAAAAGAAAGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGG
CAAGGAGCTGGTGAAGAAGTTGGTTTGAAAATCTGGAGAATCGTCAAATT
TGAGgttacaggttggGAAGATGACCAATACGGTGAATTTTATAACGGAG
ATTCTTACATTATCCTTAACACTTACAAAGAGCCTGAAGGTGATGAACTC
AAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAAGATGAATA
CGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTTTTGGATGATA
AACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCACTCTTCAAA
TCGTATTTTGATTCCATGAGTTTGTTGGAAGGAGGAGCTGATACTGGCTT
TAAACGCGTCTTACCAGAAGCTTATGAACCAAGATTGTTTGTTGTCCAAA
AAGGAGCTAACAAGAAGatcacttgctcacaaatcgaATTGAAACGTGGC
AATTTGAGCTCTGATAATGTCTACATCATTGATAATGGTTTGAACGTTTA
CCAATGGAATGGATCAGACTGCAGCCCAGATGAGAAATTCAAGGCAGCCA
CAGAAGTTGACAAAATTGAAGGCAAACGATCAGGTTGCAAAACACACACC
CTCGAAGAGAGAAGCTGTGGAGATAACCACCCTGCCATCCAAATTCTTGG
CCCTGGTAAAAGTGAAGATGCTGGAGAGATGCCAGAAGGAGAGAAAAAGG
TGTTGAAAATCAAGGACGGTGAAGATGTTGAAGAAGTAGCAAGTGGTGAT
GACATTTCCAAAGATCAACTCCAATCTGACGATGTCTACATCATTAACAC
TGGAGATCATGTTTATTGTTGGGTCGGTAAAGGAGCCAGCGTTGACGAAC
GAAAGAATGGAATTCCTTATGCTTGCAATTACTTGTCCAAAACCGAAACA
CCATGGCTTCCAGTCAGCGTGGTCGCTGAGGGATCAGAGCCAAATGTCGC
TTTCTTCGCTTGAaTGCAAAAAGCTAAAGAATATGACTGGAAGGAATCCA
ACATGGCCCTCTTTGGCTCTGACACTGAAAAGAAAGTCAAGAAGGAATCG
GCAGAGAGTGAACCAGCATGGCAAGGAGCTGGTGAAGAAGTTGGTTTGAA
AATCTGGAGAATCGTCAAATTTGAGgttacaggttggGAAGATGACCAAT
ACGGTGAATTTTATAACGGAGATTCTTACATTATCCTTAACACTTACAAA
GAGCCTGAAGGTGATGAACTCAAACATGACGTTCATTTCTGGATCGGAAA
ATATTCCACTCAAGATGAATACGGTACAGCAGCTTACAAAACTGTTGAAT
TGGACACCTTTTTGGATGATAAACCAGTACAACATCGCGAAGTTCAAGGA
CACGAATCTTCACTCTTCAAATCGTATTTTGATTCCATGAGTTTGTTGGA
AGGAGGAGCTGATACTGGCTTTAAACGCGTCTTACCAGAAGCTTATGAAC
CAAGATTGTTTGTTGTCCAAAAAGGAGCTAACAAGAAGatcacttgctca
caaatcgaATTGAAACGTGGCAATTTGAGCTCTGATAATGTCTACATCAT
TGATAATGGTTTGAACGTTTACCAATGGAATGGATCAGACTGCAGCCCAG
ATGAGAAATTCAAGGCAGCCACAGAAGTTGACAAAATTGAAGGCAAACGA
TCAGGTTGCAAAACACACACCCTCGAAGAGAGAAGCTGTGGAGATAACCA
CCCTGCCATCCAAATTCTTGGCCCTGGTAAAAGTGAAGATGCTGGAGAGA
TGCCAGAAGGAGAGAAAAAGGTGTTGAAAATCAAGGACGGTGAAGATGTT
GAAGAAGTAGCAAGTGGTGATGACATTTCCAAAGATCAACTCCAATCTGA
CGATGTCTACATCATTAACACTGGAGATCATGTTTATTGTTGGGTCGGTA
AAGGAGCCAGCGTTGACGAACGAAAGAATGGAATTCCTTATGCTTGCAAT
TACTTGTCCAAAACCGAAACACCATGGCTTCCAGTCAGCGTGGTCGCTGA
GGGATCAGAGCCAAATGTCGCTTTCTTCGCTTGAaTGCAAAAAGCTAAAG
AATATGACTGGAAGGAATCCAACATGGCCCTCTTTGGCTCTGACACTGAA
AAGAAAGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGAGC
TGGTGAAGAAGTTGGTTTGAAAATCTGGAGAATCGTCAAATTTGAGgtta
caggttggGAAGATGACCAATACGGTGAATTTTATAACGGAGATTCTTAC
ATTATCCTTAACACTTACAAAGAGCCTGAAGGTGATGAACTCAAACATGA
CGTTCATTTCTGGATCGGAAAATATTCCACTCAAGATGAATACGGTACAG
CAGCTTACAAAACTGTTGAATTGGACACCTTTTTGGATGATAAACCAGTA
CAACATCGCGAAGTTCAAGGACACGAATCTTCACTCTTCAAATCGTATTT
TGATTCCATGAGTTTGTTGGAAGGAGGAGCTGATACTGGCTTTAAACGCG
TCTTACCAGAAGCTTATGAACCAAGATTGTTTGTTGTCCAAAAAGGAGCT
AACAAGAAGatcacttgctcacaaatcgaATTGAAACGTGGCAATTTGAG
CTCTGATAATGTCTACATCATTGATAATGGTTTGAACGTTTACCAATGGA
ATGGATCAGACTGCAGCCCAGATGAGAAATTCAAGGCAGCCACAGAAGTT
GACAAAATTGAAGGCAAACGATCAGGTTGCAAAACACACACCCTCGAAGA
GAGAAGCTGTGGAGATAACCACCCTGCCATCCAAATTCTTGGCCCTGGTA
AAAGTGAAGATGCTGGAGAGATGCCAGAAGGAGAGAAAAAGGTGTTGAAA
ATCAAGGACGGTGAAGATGTTGAAGAAGTAGCAAGTGGTGATGACATTTC
CAAAGATCAACTCCAATCTGACGATGTCTACATCATTAACACTGGAGATC
ATGTTTATTGTTGGGTCGGTAAAGGAGCCAGCGTTGACGAACGAAAGAAT
GGAATTCCTTATGCTTGCAATTACTTGTCCAAAACCGAAACACCATGGCT
TCCAGTCAGCGTGGTCGCTGAGGGATCAGAGCCAAATGTCGCTTTCTTCG
CTTGAaTGCAAAAAGCTAAAGAATATGACTGGAAGGAATCCAACATGGCC
CTCTTTGGCTCTGACACTGAAAAGAAAGTCAAGAAGGAATCGGCAGAGAG
TGAACCAGCATGGCAAGGAGCTGGTGAAGAAGTTGGTTTGAAAATCTGGA
GAATCGTCAAATTTGAGgttacaggttggGAAGATGACCAATACGGTGAA
TTTTATAACGGAGATTCTTACATTATCCTTAACACTTACAAAGAGCCTGA
AGGTGATGAACTCAAACATGACGTTCATTTCTGGATCGGAAAATATTCCA
CTCAAGATGAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACC
TTTTTGGATGATAAACCAGTACAACATCGCGAAGTTCAAGGACACGAATC
TTCACTCTTCAAATCGTATTTTGATTCCATGAGTTTGTTGGAAGGAGGAG
CTGATACTGGCTTTAAACGCGTCTTACCAGAAGCTTATGAACCAAGATTG
TTTGTTGTCCAAAAAGGAGCTAACAAGAAGatcacttgctcacaaatcga
ATTGAAACGTGGCAATTTGAGCTCTGATAATGTCTACATCATTGATAATG
GTTTGAACGTTTACCAATGGAATGGATCAGACTGCAGCCCAGATGAGAAA
TTCAAGGCAGCCACAGAAGTTGACAAAATTGAAGGCAAACGATCAGGTTG
CAAAACACACACCCTCGAAGAGAGAAGCTGTGGAGATAACCACCCTGCCA
TCCAAATTCTTGGCCCTGGTAAAAGTGAAGATGCTGGAGAGATGCCAGAA
GGAGAGAAAAAGGTGTTGAAAATCAAGGACGGTGAAGATGTTGAAGAAGT
AGCAAGTGGTGATGACATTTCCAAAGATCAACTCCAATCTGACGATGTCT
ACATCATTAACACTGGAGATCATGTTTATTGTTGGGTCGGTAAAGGAGCC
AGCGTTGACGAACGAAAGAATGGAATTCCTTATGCTTGCAATTACTTGTC
CAAAACCGAAACACCATGGCTTCCAGTCAGCGTGGTCGCTGAGGGATCAG
AGCCAAATGTCGCTTTCTTCGCTTGAaTGCAAAAAGCTAAAGAATATGAC
TGGAAGGAATCCAACATGGCCCTCTTTGGCTCTGACACTGAAAAGAAAGT
CAAGAAGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGAGCTGGTGAAG
AAGTTGGTTTGAAAATCTGGAGAATCGTCAAATTTGAGgttacaggttgg
GAAGATGACCAATACGGTGAATTTTATAACGGAGATTCTTACATTATCCT
TAACACTTACAAAGAGCCTGAAGGTGATGAACTCAAACATGACGTTCATT
TCTGGATCGGAAAATATTCCACTCAAGATGAATACGGTACAGCAGCTTAC
AAAACTGTTGAATTGGACACCTTTTTGGATGATAAACCAGTACAACATCG
CGAAGTTCAAGGACACGAATCTTCACTCTTCAAATCGTATTTTGATTCCA
TGAGTTTGTTGGAAGGAGGAGCTGATACTGGCTTTAAACGCGTCTTACCA
GAAGCTTATGAACCAAGATTGTTTGTTGTCCAAAAAGGAGCTAACAAGAA
GatcacttgctcacaaatcgaATTGAAACGTGGCAATTTGAGCTCTGATA
ATGTCTACATCATTGATAATGGTTTGAACGTTTACCAATGGAATGGATCA
GACTGCAGCCCAGATGAGAAATTCAAGGCAGCCACAGAAGTTGACAAAAT
TGAAGGCAAACGATCAGGTTGCAAAACACACACCCTCGAAGAGAGAAGCT
GTGGAGATAACCACCCTGCCATCCAAATTCTTGGCCCTGGTAAAAGTGAA
GATGCTGGAGAGATGCCAGAAGGAGAGAAAAAGGTGTTGAAAATCAAGGA
CGGTGAAGATGTTGAAGAAGTAGCAAGTGGTGATGACATTTCCAAAGATC
AACTCCAATCTGACGATGTCTACATCATTAACACTGGAGATCATGTTTAT
TGTTGGGTCGGTAAAGGAGCCAGCGTTGACGAACGAAAGAATGGAATTCC
TTATGCTTGCAATTACTTGTCCAAAACCGAAACACCATGGCTTCCAGTCA
GCGTGGTCGCTGAGGGATCAGAGCCAAATGTCGCTTTCTTCGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010704XLOC_010704Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019089-proteinTCONS_00019089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019089-exon-sc0000319-1491911889:168409..168939TCONS_00019089-exon-sc0000319-1491911889:168409..168939Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:168409..168939TCONS_00019089-exon-sc0000319-1510915933:168409..168939Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:168409..168939TCONS_00019089-exon-sc0000319-1575043694:168409..168939Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1491911889:169413..169502TCONS_00019089-exon-sc0000319-1491911889:169413..169502Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:169413..169502TCONS_00019089-exon-sc0000319-1510915933:169413..169502Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:169413..169502TCONS_00019089-exon-sc0000319-1575043694:169413..169502Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1491911889:169766..170024TCONS_00019089-exon-sc0000319-1491911889:169766..170024Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:169766..170024TCONS_00019089-exon-sc0000319-1510915933:169766..170024Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:169766..170024TCONS_00019089-exon-sc0000319-1575043694:169766..170024Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1491911889:170367..170557TCONS_00019089-exon-sc0000319-1491911889:170367..170557Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:170367..170557TCONS_00019089-exon-sc0000319-1510915933:170367..170557Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:170367..170557TCONS_00019089-exon-sc0000319-1575043694:170367..170557Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1491911889:170906..171100TCONS_00019089-exon-sc0000319-1491911889:170906..171100Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:170906..171100TCONS_00019089-exon-sc0000319-1510915933:170906..171100Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:170906..171100TCONS_00019089-exon-sc0000319-1575043694:170906..171100Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1491911889:171286..171370TCONS_00019089-exon-sc0000319-1491911889:171286..171370Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:171286..171370TCONS_00019089-exon-sc0000319-1510915933:171286..171370Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:171286..171370TCONS_00019089-exon-sc0000319-1575043694:171286..171370Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1491911889:171528..173983TCONS_00019089-exon-sc0000319-1491911889:171528..173983Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1510915933:171528..173983TCONS_00019089-exon-sc0000319-1510915933:171528..173983Clytia hemisphaericaexon
TCONS_00019089-exon-sc0000319-1575043694:171528..173983TCONS_00019089-exon-sc0000319-1575043694:171528..173983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:168409..173983 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.9472	71.1942	72.6054	64.6943	8.64262	8.39401	21.3408	20.8707	17.0064	20.3906	21.2794	12.2544	150.323	118.964	43.9481	53.5299	47.5879	65.3787	301.612	355.108	39.2935	36.9635	40.7171	40.9622	30.2974	31.3706	37.5262	32.4218	52.0298	65.1098
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007122Villin/Gelsolin
IPR029006ADF-H/Gelsolin-like_dom
IPR007123Gelsolin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0051015actin filament binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051015 actin filament binding
Blast
[Close]
BLAST of TCONS_00019089 vs. Swiss-Prot (Human)
Match: GELS (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.832e-47
Identity = 116/335 (34.63%), Postives = 195/335 (58.21%), Query Frame = 1 
Query:  559 PAWQGAGEEVGLKIWRIVKFEVTGWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYFDS-MSLLEGGADTGFKRVLP-EAYEPRLFVVQKGANKKITCSQIELKRGNLSSDNVYIIDNGLNVYQWNGSDCSPDEKFKAATEVDK--IEGKRSG-CKTHTLEERSCGDNHPAIQILGPGKSEDAGEMPEGEK--------KVLKIKDGE---DVEEVASGDDISKDQLQSDDVYIINTGD--HVYCWVGKGASVDERKNGIPYACNYLSKTETP-WLPVSVVAEGSE 1506
            P +  AG+E GL+IWR+ KF++     + YG+F+ GD+Y+IL T +   G+ L++D+H+W+G   +QDE G AA  TV+LD +L+ + VQHREVQG ES+ F  YF S +   +GG  +GFK V+P E    RLF V+    + +  +++ +   + ++ + +I+D G N++QW GS+ +  E+ K AT+V K   + +RSG  + H  EE +  +    +Q+LGP  +  AG     ++        K+ K+ +G     V  VA  +  ++  L+S+D +I++ G    ++ W GK A+ +ERK  +  A ++++K + P    VSV+ EG E
Sbjct:   57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGN-LQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVK--GRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLK-ATQVSKGIRDNERSGRARVHVSEEGT--EPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGE 385

HSP 2 Score: 107.457 bits (267), Expect = 1.609e-23
Identity = 95/318 (29.87%), Postives = 139/318 (43.71%), Query Frame = 1 
Query:  595 KIWRIVKFEVTGWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYF--DSMSLLEGGADTGFKRVLPEAYEPRLFVVQKGANKKITCSQIELKRGNLSSDNVYIIDNGLNVYQWNGSDCSPDEKFKA--------ATEVDKIEGKRSGCKTHTLEERSCGDNHPAIQILGPGKSEDAGEMPEGEKKVLKIKDGEDVEEVASGDDISKDQLQSDDVYIINTGDHVYCWVGKGASVDERKNGIPYACNYL---SKTETPWLPVSVVAEGSEP 1509
            +IWRI        +   YG+FY GDSYIIL  Y+   G      ++ W G  STQDE   +A  T +LD  L   PVQ R VQG E +   S F    M + +GG      +  P +   RLF V+  +       ++  K G L+S++ +++      Y W G+  S  EK  A        A  V   EG         L  ++     P ++     K  DA   P       KI  G  V E   G+ + +D L +DDV +++T D V+ WVGK +  +E+   +  A  Y+           P++VV +G EP
Sbjct:  448 QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRH--GGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPAST--RLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLK----DKKMDA-HPPRLFACSNKI--GRFVIEEVPGELMQED-LATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEP 753
The following BLAST results are available for this feature:
BLAST of TCONS_00019089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GELS3.832e-4734.63Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1[more]
back to top