TCONS_00019071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019071
Unique NameTCONS_00019071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019071 ID=TCONS_00019071|Name=TCONS_00019071|organism=Clytia hemisphaerica|type=transcript|length=411bp
ttttagatttcaagaaaattagttttaaagagagaaacttttttgtggcg
cacccggtacaaGACATTGACAAAAAGATATTACACTCTTTCTTATCATC
ATTTGCTGATGATACACGtctaatgaaaaaaatcaaaaaccatgCTGATA
TCATTCAGCTCCAAGATGACATGAACGCAGTCTATGAGTGGACTGGATTG
AATAGCATGAAATTGAATGGACTTGAATTTGAACATCTCAATTATGGTAG
AAATGAAGAACTTAAAGAACTCTCCAAATACTTCTCTGATACCCAAAAGG
TGATAGATACCAAGACTACAGTCAAAGACCTTGGGATCACTTTAGATGTG
GGTATGACATATGACAATCATATAGAAAATGTAATCGACAAGGTCAAAGG
TATCAGTTCNN
Run BLAST on NCBI

protein sequence of TCONS_00019071-protein

>TCONS_00019071-protein ID=TCONS_00019071-protein|Name=TCONS_00019071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
LDFKKISFKERNFFVAHPVQDIDKKILHSFLSSFADDTRLMKKIKNHADI
IQLQDDMNAVYEWTGLNSMKLNGLEFEHLNYGRNEELKELSKYFSDTQKV
IDTKTTVKDLGITLDVGMTYDNHIENVIDKVKGISX
Run BLAST on NCBI

transcript from alignment at sc0000317:124385..124795

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019071 ID=TCONS_00019071|Name=TCONS_00019071|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000317:124385..124795 (Clytia hemisphaerica)
NNGAACTGATACCTTTGACCTTGTCGATTACATTTTCTATATGATTGTCA
TATGTCATACCCACATCTAAAGTGATCCCAAGGTCTTTGACTGTAGTCTT
GGTATCTATCACCTTTTGGGTATCAGAGAAGTATTTGGAGAGTTCTTTAA
GTTCTTCATTTCTACCATAATTGAGATGTTCAAATTCAAGTCCATTCAAT
TTCATGCTATTCAATCCAGTCCACTCATAGACTGCGTTCATGTCATCTTG
GAGCTGAATGATATCAGcatggtttttgatttttttcattagaCGTGTAT
CATCAGCAAATGATGATAAGAAAGAGTGTAATATCTTTTTGTCAATGTCt
tgtaccgggtgcgccacaaaaaagtttctctctttaaaactaattttctt
gaaatctaaaa

Coding sequence (CDS) from alignment at sc0000317:124385..124795

>TCONS_00019071 ID=TCONS_00019071|Name=TCONS_00019071|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000317:124385..124795 (Clytia hemisphaerica)
NGAACTGATACCTTTGACCTTGTCGATTACATTTTCTATATGATTGTCAT
ATGTCATACCCACATCTAAAGTGATCCCAAGGTCTTTGACTGTAGTCTTG
GTATCTATCACCTTTTGGGTATCAGAGAAGTATTTGGAGAGTTCTTTAAG
TTCTTCATTTCTACCATAATTGAGATGTTCAAATTCAAGTCCATTCAATT
TCATGCTATTCAATCCAGTCCACTCATAGACTGCGTTCATGTCATCTTGG
AGCTGAATGATATCAGcatggtttttgatttttttcattagaCGTGTATC
ATCAGCAAATGATGATAAGAAAGAGTGTAATATCTTTTTGTCAATGTCtt
gtaccgggtgcgccacaaaaaagtttctctctttaaaactaattttcttg
aaatctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010686XLOC_010686Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019071-proteinTCONS_00019071-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019071-exon-sc0000317-1491911889:124385..124795TCONS_00019071-exon-sc0000317-1491911889:124385..124795Clytia hemisphaericaexon
TCONS_00019071-exon-sc0000317-1510915933:124385..124795TCONS_00019071-exon-sc0000317-1510915933:124385..124795Clytia hemisphaericaexon
TCONS_00019071-exon-sc0000317-1575043694:124385..124795TCONS_00019071-exon-sc0000317-1575043694:124385..124795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:124385..124795 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3213	1.4987	2.47774	0.92392	0.514351	0.199306	0.264513	0.272434	0.489902	0	0	0.554865	0.127987	1.65334	0.266691	0.22771	0	0.393618	0.219949	0.19593	0.212377	0.309938	0.470607	0.356211	0.31185	1.43761	4.25455	5.02073	0.730252	1.3353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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