TCONS_00019056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019056
Unique NameTCONS_00019056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019056 ID=TCONS_00019056|Name=TCONS_00019056|organism=Clytia hemisphaerica|type=transcript|length=896bp
AAGAGCTATTTACGGGAGTCACAAACCTCGTTGAACATCCCATTGCTAAA
GATGCACCTAGTCAGCCGAAGTCCATGCCGAACATGCCGGTGTTTTTGAC
AAAGAAAGAACGGAAGAAGATACGCACACAGAGAAGGCGTgaagaagaga
aagagaaaaatgtgaaaatccgTCTCGGTCTTGAACCTCCCCCGCCGCCC
AAAGTGAAAATTTCCAATTTGATGAGAGTGTTGGCATCAGAAGCTGTTCA
AGATCCTACAAAAGTTGAAGCACATGTTCGTGCACAAATGGCTGCCCGAC
AAAAAAAACACGAACAGGCGAATGAGGAGAGGAAACTAACAAAAGAACAA
CGTACTGAAAAGAAGATCAAGAAGTTAAAAGAAGACACTTCTTTGGGTGT
TCACATCGCCGTGTACAGTCTCCTTGATTTGTCAAACCCttccaaaaaat
tcaaagtggaCACCAACGCAACGCAATTATACTTAACTGGGAGTGTCCTG
ATTACTAAAGAACTAGTACTTGTCATCGCAGAGGGTGGTCCgaaatcaca
aaagaaattCAAGCGGCTCATGATGCACCGTATCAAGTGGGATGAAGACA
CAGCACAGGGCAGACGGCaagataaaatcgataaaaaGAAGCATGAATAC
AACGTTGAAAAACAAATGAACAAATGTCAACTCGTGTGGGAGgGTACGGC
AATAGAAAAGACGTTTAGTGATTGGAAATTTCATTTATTCAAAACCGAAA
CTGAAGCTCAAGAGTTTTTGCGGAAATCTAATATTGAACATTATTGGAAT
CTGGCGAAAAGTCGATCACTGTTAGAAGAAGACTGATTGTTGATATTAAA
AACTCATTcaggcccggtggaacaacCGTTAAGGCCGGTCACCACT
Run BLAST on NCBI

protein sequence of TCONS_00019056-protein

>TCONS_00019056-protein ID=TCONS_00019056-protein|Name=TCONS_00019056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
ELFTGVTNLVEHPIAKDAPSQPKSMPNMPVFLTKKERKKIRTQRRREEEK
EKNVKIRLGLEPPPPPKVKISNLMRVLASEAVQDPTKVEAHVRAQMAARQ
KKHEQANEERKLTKEQRTEKKIKKLKEDTSLGVHIAVYSLLDLSNPSKKF
KVDTNATQLYLTGSVLITKELVLVIAEGGPKSQKKFKRLMMHRIKWDEDT
AQGRRQDKIDKKKHEYNVEKQMNKCQLVWEGTAIEKTFSDWKFHLFKTET
EAQEFLRKSNIEHYWNLAKSRSLLEED
Run BLAST on NCBI

transcript from alignment at sc0000317:293558..298240-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019056 ID=TCONS_00019056|Name=TCONS_00019056|organism=Clytia hemisphaerica|type=transcript|length=4683bp|location=Sequence derived from alignment at sc0000317:293558..298240- (Clytia hemisphaerica)
AAGAGCTATTTACGGGAGTCACAAACCTCGTTGAACATCCCATTGCTAAA
GATGCACCTAGTACGTTCCCCATTCAATACATAATGTTAGCAGAATTCTC
TTCATACTTTGACCAAAATCATTGTGTTTTTTTGTTACTTCTGGGTCTTT
ATTTAACGCTTTTTATTTCTTTCGTTCTTCGTATTTAAACTATGAATTGA
GAAAAGTGTTTTGTTGGCTTTCTAATAGTTTAGCGAGCCGGGGATCTTTC
TCACAATCTAACGACCATAGTCAGAAAATTGATTTTTGTATCTGAACATA
GAAGTTATGTTTTAGATTCTTTAACACTTTTAACAAAGAATTGCCTTTTA
TAAATTGCTTTTTAATCAAAACCCTTAGAGTAATTTTAAGAACTTGATTG
CAAAAATGACGTTATGAACTTTAAAAAGACGTTAATAGTTGCATCACCTT
CTTTTATAAAAAGTGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTTCG
ATGTTTTTTCAAACTGTCTATAAAGAATTGAACTGTTTAAAATTTTTGGG
GAAAAATTTTCTAAATTAATGCATCAAAAGTTATGGTTGTTTTTCTATAA
AAAATTGAGATGGAAAATTGGTCAAAAAGCACTATTTTCAAGATTTTGAA
GTAAATAAGCTTTTAGAAAAATTTTCCGAAAATATAATTTTAGTTCGATA
AAAGATACACCATCTAGCACAAAAAAAAATTAAAAATGTTTTTTCCTCGC
CGAAACTAAGCTCTTCAAAGTTGAAATACTCTTCTTCGCAAAAGTCATTT
TCTTCTTCATCAAATGTTTTCATTGCGATTTTTGAATTTTCAGACTCGCG
GATAGTTGGCCTAACAGAAAATGTATAACATGTCAAAGTTTTCAGAGCCT
ATAAGTGGCTAAATTTAACGAGTAGATAATTTCGCGAGACTTAATTTTTG
CGGGATTTATTTTCGCGAATTGGTCCCTTTTTCATTTTTTGACCTAGGGT
TTTTGTCAAAATTTATGGTTTAAAATTTTCGCGAGCATAAATTTTTTCGA
ATTTTCGGAAAAAACTCGAGAAACTCGAGAAATATATAATCCTCGCGTCC
ATTTTGTCCACTTGAGCTACTTAAAAAGTTCAAATTGTTCAAGAATTAAG
TTTCTATTATTTCCATTTTTCAGGTCAGCCGAAGTCCATGCCGAACATGC
CGGTGTTTTTGACAAAGAAAGAACGGAAGAAGATACGCACACAGAGAAGG
CGTGAAGAAGAGAAAGAGAAAAATGTGAAAATCCGTCTCGGTCTTGAACC
TCCCCCGCCGCCCAAAGGTTTCTGACATTGATATTTTCAAGGTTGCCCTG
AATCAAGTCAAATGTAGAGCGCTCTAATCGTGCTGTCGACTTCAAATTTC
GTACGAATAAAGGCCGGTCTACCCTTGCGTGCTATCGCACCTTTTGGCTT
CAATACTTTTTGCTTGGAAAAAAAATTACTTCTTAAGAATGTAGTGCGCA
CTTGAAAAAAAAGTTGAATACATTTCAACTTTTTCGACCGTTACGTCAGA
TCGTGCCAATGGAATTGTTTCATTTTTCTTTTGACCAATAGCGTGGAAGC
TTTGCTCGAAAAAGTGCGATCGCAGCGCGCGCAAGTGGAGACCGCCCTTT
AGCCACACGAAGTTTGACGTGGTCAACACGATTAGAGTGCTCTTCTACGT
CAAAATTTGAAACTTATGGAAACTTCTTTTTGGACCATTCGGTATTGTCT
GCTTTAAAGTCACCGAACTCTAAATTAAGATTGGAATGAACATTTTCGAT
GGAGAGTGCCTGTGGCTGTGTCTAAAAACGGCTGACTTTTTTTAATCGAG
GGAATCTACGCTGTGTTGCAAACTGGTAGGCGGTTTTGCCTTCACTAAAT
AATGATTTAGAGTTTGGTGCGAAAATCATGCCAGAGGCGTTGTGTATGCG
AGCTTTCAGTGAGAAAAGCAACAACTTTTCTCACTCACTCCAACAATTTT
TTATCGGTTGTTCGAAATCTCTTGAATTTAGATCTCGTATTTTCTTCACA
GTGAAAATTTCCAATTTGATGAGAGTGTTGGCATCAGAAGCTGTTCAAGA
TCCTACAAAAGTTGAAGCACATGTTCGTGCACAAATGGCTGCCCGACAAA
AGTAAGTCATCTTAGGTCAATCATTCAAACTTGTAACGAAGTTACTTAAA
CGAAAGTAAAATTATAGAAGATTATAATTTATTATAGGATTTTTTCACTT
TGTAATATTTTGTTCTTTTTTATGTGAATGTGGATGTCAACGAAAGTTAC
CATGAAAACTGTCGGCTTACACAAAACCTTTCTCCCTCTGAGAAGCACCC
TATAAAGCGCATTGCCATTCTAAGGGTTGTCTGACCCCCGGCTGAATGAA
TAGCTTATATTGGGTAATCTATTTTTAGTGATAAGTAATTGAGAGCTGAG
AGAGTAGGTATACTGCTCCATCTCAGGATTCGATCTTCCTACTCTAGCAC
TGATAGAAAAAGGGGATAGACTCTGTCACTCCCGGCTCCACTTATAGCCA
CCAGATGAATATACTCACTTTTTACTTTAACTTTCCATAGAAAACACGAA
CAGGCGAATGAGGAGAGGAAACTAACAAAAGAACAACGTACTGAAAAGAA
GATCAAGAAGTTAAAAGAAGACACTTCTTTGGGTGTTCACATCGCCGTGT
ACAGTCTCCTTGATTTGTCAAACCCTTCCAAAAAATTCAAAGTGGACACC
AACGCAACGCAATTATACTTAACTGGTTTGTATACCCCTGTATTGTCTGT
CTGTCTGTCTGTCTTTCCCTATCCGTCTGTCTATTAAGAAACTATTTTAC
TCTTATGGTTTACTAAAGTACTAAATCTGTTTAAATATCGTAACATTGTG
TTCTTTTCTTATGATAAAAACGGATTTGAAATCAAAGCTCTACCTATTTA
AAACATTCATCTCCAAATTTGATATCCGTTCACAAAGTATATGGTAGTTT
TGCGTGGAGTGTATTATCCATACAAACTTTAAAGGTTTTCTTTTTATGAG
TGATATCGTTTGCTTACTCATCGATTTTAATTCACAAGCCTTTTCACATT
GAATTGACACGAATATGGAGCAAGATTGGCTATGGAAATAGGAAAAGAAA
AACATTTTTTGCTTATATCATCTTAATATAACAATAGGCAGACACTGTCC
CGACATGAAATATGTGTCTGATATGAAACGGGAACACTTATGTAAAATTA
AAACCTTTAATATTCTATTTTAGTGAAATGTATTTTCGTATTTTAGGGAG
TGTCCTGATTACTAAAGAACTAGTACTTGTCATCGCAGAGGGTGGTCCGA
AATCACAAAAGAAATTCAAGCGGCTCATGATGCACCGTATCAAGTGGGAT
GAAGACACAGCACAGGGCAGACGGCAAGATAAAATCGATAAAAAGAAGCA
TGAATACAACGTTGAAAAACAAATGAACAAATGTCAACTCGTGTGGGAGG
TATGTATATAATTCCGGGGAATATTCCTATTAACCCTAACCTGAGATCAG
ATTATGGCTGTTTTCTGCCCACCACTCTAAAGCTCTAAAGGGATGGGTGA
AAACATACAATCTGACGAATATGCAATCTCGAAATCGTAAGGACCGCGTT
CGTCTAAAAGGACTAGGAATGACAAGAAAGTTGTGTGATTGTGTTTATGA
ATAGGGGGCCGTATCAGTTTTTAACTTTCCGGCGCACAACAAGATTCTTG
TTGTAGAATTTTCTGCGGGAGGACTATTTTCCTCAGATGTATAATTTTCA
AGTGCCTTCAGAGGTTTACCGTGCACGTAAGAAAATTATAAACAGCTGTT
ATCAGGTTAATTAACCCTGAATTCACAAGGTCAATAACGCCTAAATATCT
TCCTTCGTGAACTCGTCAATGCAGCAACTTTGAGATTTAACCCCGGTAAC
CCCAACCCCTTTTACACAGCTTTAAGCAACACGTGAGGGGTTTATCTAAA
GAATCCTGCATTACTAAAAATAGACAAAAAGAACGACAAATTTCATAAAG
AACGACAAAAATTGCCGTCCACAACCCCGGAAGTGATTACCACCCCTACG
GATTCATTCCCCTTTGGTTATCACGGGAATTAACTACAGGTGGTCTAAAA
GAACGAAAAATTACGCATGCGTGTTACAATGCAGGATTTTTTAGAGGAAC
AGATTGCGTATACACCTATTAAGCCTTAGCGATGCGGTTGACTTTTCAGG
GAGATCAACGATGAATTTACTTCTCGGTGCATGGNACCTATTAAGCCTTA
GCGATGCGGTTGACTTTTCAGGGAGATCAGCCATGAATTTACTTCTCGGT
GCATGGCATTTTAGTCAACCTTCAATCATAAAATTCCCGCCAAAGCTACG
ATTATAACTCATTGACGTCTATTGACAAAGATTCATTAAAACTATCAATT
TCTGAAATTTTCTTTCCTTTTTTTCTCAGGGTACGGCAATAGAAAAGACG
TTTAGTGATTGGAAATTTCATTTATTCAAAACCGAAACTGAAGCTCAAGA
GTTTTTGCGGAAATCTAATATTGAACATTATTGGAATCTGGCGAAAAGTC
GATCACTGTTAGAAGAAGACTGATTGTTGATATTAAAAACTCATTCAGGC
CCGGTGGAACAACCGTTAAGGCCGGTCACCACT

Coding sequence (CDS) from alignment at sc0000317:293558..298240-

>TCONS_00019056 ID=TCONS_00019056|Name=TCONS_00019056|organism=Clytia hemisphaerica|type=CDS|length=5004bp|location=Sequence derived from alignment at sc0000317:293558..298240- (Clytia hemisphaerica)
GGTACGGCAATAGAAAAGACGTTTAGTGATTGGAAATTTCATTTATTCAA
AACCGAAACTGAAGCTCAAGAGTTTTTGCGGAAATCTAATATTGAACATT
ATTGGAATCTGGCGAAAAGTCGATCACTGTTAGAAGAAGACTGAGGAGTG
TCCTGATTACTAAAGAACTAGTACTTGTCATCGCAGAGGGTGGTCCGAAA
TCACAAAAGAAATTCAAGCGGCTCATGATGCACCGTATCAAGTGGGATGA
AGACACAGCACAGGGCAGACGGCAAGATAAAATCGATAAAAAGAAGCATG
AATACAACGTTGAAAAACAAATGAACAAATGTCAACTCGTGTGGGAGAAA
ACACGAACAGGCGAATGAGGAGAGGAAACTAACAAAAGAACAACGTACTG
AAAAGAAGATCAAGAAGTTAAAAGAAGACACTTCTTTGGGTGTTCACATC
GCCGTGTACAGTCTCCTTGATTTGTCAAACCCTTCCAAAAAATTCAAAGT
GGACACCAACGCAACGCAATTATACTTAACTGTGAAAATTTCCAATTTGA
TGAGAGTGTTGGCATCAGAAGCTGTTCAAGATCCTACAAAAGTTGAAGCA
CATGTTCGTGCACAAATGGCTGCCCGACAAAAGTCAGCCGAAGTCCATGC
CGAACATGCCGGTGTTTTTGACAAAGAAAGAACGGAAGAAGATACGCACA
CAGAGAAGGCGTGAAGAAGAGAAAGAGAAAAATGTGAAAATCCGTCTCGG
TCTTGAACCTCCCCCGCCGCCCAAAGGAGCTATTTACGGGAGTCACAAAC
CTCGTTGAACATCCCATTGCTAAAGATGCACCTAGGTACGGCAATAGAAA
AGACGTTTAGTGATTGGAAATTTCATTTATTCAAAACCGAAACTGAAGCT
CAAGAGTTTTTGCGGAAATCTAATATTGAACATTATTGGAATCTGGCGAA
AAGTCGATCACTGTTAGAAGAAGACTGAGGAGTGTCCTGATTACTAAAGA
ACTAGTACTTGTCATCGCAGAGGGTGGTCCGAAATCACAAAAGAAATTCA
AGCGGCTCATGATGCACCGTATCAAGTGGGATGAAGACACAGCACAGGGC
AGACGGCAAGATAAAATCGATAAAAAGAAGCATGAATACAACGTTGAAAA
ACAAATGAACAAATGTCAACTCGTGTGGGAGAAAACACGAACAGGCGAAT
GAGGAGAGGAAACTAACAAAAGAACAACGTACTGAAAAGAAGATCAAGAA
GTTAAAAGAAGACACTTCTTTGGGTGTTCACATCGCCGTGTACAGTCTCC
TTGATTTGTCAAACCCTTCCAAAAAATTCAAAGTGGACACCAACGCAACG
CAATTATACTTAACTGTGAAAATTTCCAATTTGATGAGAGTGTTGGCATC
AGAAGCTGTTCAAGATCCTACAAAAGTTGAAGCACATGTTCGTGCACAAA
TGGCTGCCCGACAAAAGTCAGCCGAAGTCCATGCCGAACATGCCGGTGTT
TTTGACAAAGAAAGAACGGAAGAAGATACGCACACAGAGAAGGCGTGAAG
AAGAGAAAGAGAAAAATGTGAAAATCCGTCTCGGTCTTGAACCTCCCCCG
CCGCCCAAAGGAGCTATTTACGGGAGTCACAAACCTCGTTGAACATCCCA
TTGCTAAAGATGCACCTAGGTACGGCAATAGAAAAGACGTTTAGTGATTG
GAAATTTCATTTATTCAAAACCGAAACTGAAGCTCAAGAGTTTTTGCGGA
AATCTAATATTGAACATTATTGGAATCTGGCGAAAAGTCGATCACTGTTA
GAAGAAGACTGAGGAGTGTCCTGATTACTAAAGAACTAGTACTTGTCATC
GCAGAGGGTGGTCCGAAATCACAAAAGAAATTCAAGCGGCTCATGATGCA
CCGTATCAAGTGGGATGAAGACACAGCACAGGGCAGACGGCAAGATAAAA
TCGATAAAAAGAAGCATGAATACAACGTTGAAAAACAAATGAACAAATGT
CAACTCGTGTGGGAGAAAACACGAACAGGCGAATGAGGAGAGGAAACTAA
CAAAAGAACAACGTACTGAAAAGAAGATCAAGAAGTTAAAAGAAGACACT
TCTTTGGGTGTTCACATCGCCGTGTACAGTCTCCTTGATTTGTCAAACCC
TTCCAAAAAATTCAAAGTGGACACCAACGCAACGCAATTATACTTAACTG
TGAAAATTTCCAATTTGATGAGAGTGTTGGCATCAGAAGCTGTTCAAGAT
CCTACAAAAGTTGAAGCACATGTTCGTGCACAAATGGCTGCCCGACAAAA
GTCAGCCGAAGTCCATGCCGAACATGCCGGTGTTTTTGACAAAGAAAGAA
CGGAAGAAGATACGCACACAGAGAAGGCGTGAAGAAGAGAAAGAGAAAAA
TGTGAAAATCCGTCTCGGTCTTGAACCTCCCCCGCCGCCCAAAGGAGCTA
TTTACGGGAGTCACAAACCTCGTTGAACATCCCATTGCTAAAGATGCACC
TAGGTACGGCAATAGAAAAGACGTTTAGTGATTGGAAATTTCATTTATTC
AAAACCGAAACTGAAGCTCAAGAGTTTTTGCGGAAATCTAATATTGAACA
TTATTGGAATCTGGCGAAAAGTCGATCACTGTTAGAAGAAGACTGAGGAG
TGTCCTGATTACTAAAGAACTAGTACTTGTCATCGCAGAGGGTGGTCCGA
AATCACAAAAGAAATTCAAGCGGCTCATGATGCACCGTATCAAGTGGGAT
GAAGACACAGCACAGGGCAGACGGCAAGATAAAATCGATAAAAAGAAGCA
TGAATACAACGTTGAAAAACAAATGAACAAATGTCAACTCGTGTGGGAGA
AAACACGAACAGGCGAATGAGGAGAGGAAACTAACAAAAGAACAACGTAC
TGAAAAGAAGATCAAGAAGTTAAAAGAAGACACTTCTTTGGGTGTTCACA
TCGCCGTGTACAGTCTCCTTGATTTGTCAAACCCTTCCAAAAAATTCAAA
GTGGACACCAACGCAACGCAATTATACTTAACTGTGAAAATTTCCAATTT
GATGAGAGTGTTGGCATCAGAAGCTGTTCAAGATCCTACAAAAGTTGAAG
CACATGTTCGTGCACAAATGGCTGCCCGACAAAAGTCAGCCGAAGTCCAT
GCCGAACATGCCGGTGTTTTTGACAAAGAAAGAACGGAAGAAGATACGCA
CACAGAGAAGGCGTGAAGAAGAGAAAGAGAAAAATGTGAAAATCCGTCTC
GGTCTTGAACCTCCCCCGCCGCCCAAAGGAGCTATTTACGGGAGTCACAA
ACCTCGTTGAACATCCCATTGCTAAAGATGCACCTAGGTACGGCAATAGA
AAAGACGTTTAGTGATTGGAAATTTCATTTATTCAAAACCGAAACTGAAG
CTCAAGAGTTTTTGCGGAAATCTAATATTGAACATTATTGGAATCTGGCG
AAAAGTCGATCACTGTTAGAAGAAGACTGAGGAGTGTCCTGATTACTAAA
GAACTAGTACTTGTCATCGCAGAGGGTGGTCCGAAATCACAAAAGAAATT
CAAGCGGCTCATGATGCACCGTATCAAGTGGGATGAAGACACAGCACAGG
GCAGACGGCAAGATAAAATCGATAAAAAGAAGCATGAATACAACGTTGAA
AAACAAATGAACAAATGTCAACTCGTGTGGGAGAAAACACGAACAGGCGA
ATGAGGAGAGGAAACTAACAAAAGAACAACGTACTGAAAAGAAGATCAAG
AAGTTAAAAGAAGACACTTCTTTGGGTGTTCACATCGCCGTGTACAGTCT
CCTTGATTTGTCAAACCCTTCCAAAAAATTCAAAGTGGACACCAACGCAA
CGCAATTATACTTAACTGTGAAAATTTCCAATTTGATGAGAGTGTTGGCA
TCAGAAGCTGTTCAAGATCCTACAAAAGTTGAAGCACATGTTCGTGCACA
AATGGCTGCCCGACAAAAGTCAGCCGAAGTCCATGCCGAACATGCCGGTG
TTTTTGACAAAGAAAGAACGGAAGAAGATACGCACACAGAGAAGGCGTGA
AGAAGAGAAAGAGAAAAATGTGAAAATCCGTCTCGGTCTTGAACCTCCCC
CGCCGCCCAAAGGAGCTATTTACGGGAGTCACAAACCTCGTTGAACATCC
CATTGCTAAAGATGCACCTAGGTACGGCAATAGAAAAGACGTTTAGTGAT
TGGAAATTTCATTTATTCAAAACCGAAACTGAAGCTCAAGAGTTTTTGCG
GAAATCTAATATTGAACATTATTGGAATCTGGCGAAAAGTCGATCACTGT
TAGAAGAAGACTGAGGAGTGTCCTGATTACTAAAGAACTAGTACTTGTCA
TCGCAGAGGGTGGTCCGAAATCACAAAAGAAATTCAAGCGGCTCATGATG
CACCGTATCAAGTGGGATGAAGACACAGCACAGGGCAGACGGCAAGATAA
AATCGATAAAAAGAAGCATGAATACAACGTTGAAAAACAAATGAACAAAT
GTCAACTCGTGTGGGAGAAAACACGAACAGGCGAATGAGGAGAGGAAACT
AACAAAAGAACAACGTACTGAAAAGAAGATCAAGAAGTTAAAAGAAGACA
CTTCTTTGGGTGTTCACATCGCCGTGTACAGTCTCCTTGATTTGTCAAAC
CCTTCCAAAAAATTCAAAGTGGACACCAACGCAACGCAATTATACTTAAC
TGTGAAAATTTCCAATTTGATGAGAGTGTTGGCATCAGAAGCTGTTCAAG
ATCCTACAAAAGTTGAAGCACATGTTCGTGCACAAATGGCTGCCCGACAA
AAGTCAGCCGAAGTCCATGCCGAACATGCCGGTGTTTTTGACAAAGAAAG
AACGGAAGAAGATACGCACACAGAGAAGGCGTGAAGAAGAGAAAGAGAAA
AATGTGAAAATCCGTCTCGGTCTTGAACCTCCCCCGCCGCCCAAAGGAGC
TATTTACGGGAGTCACAAACCTCGTTGAACATCCCATTGCTAAAGATGCA
CCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010674XLOC_010674Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019056-proteinTCONS_00019056-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019056-exon-sc0000317-1575043694:298181..298240TCONS_00019056-exon-sc0000317-1575043694:298181..298240Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1575043694:296924..297067TCONS_00019056-exon-sc0000317-1575043694:296924..297067Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1575043694:296090..296189TCONS_00019056-exon-sc0000317-1575043694:296090..296189Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1575043694:295466..295650TCONS_00019056-exon-sc0000317-1575043694:295466..295650Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1575043694:294742..294944TCONS_00019056-exon-sc0000317-1575043694:294742..294944Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1575043694:293558..293761TCONS_00019056-exon-sc0000317-1575043694:293558..293761Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1510915933:298181..298240TCONS_00019056-exon-sc0000317-1510915933:298181..298240Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1510915933:296924..297067TCONS_00019056-exon-sc0000317-1510915933:296924..297067Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1510915933:296090..296189TCONS_00019056-exon-sc0000317-1510915933:296090..296189Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1510915933:295466..295650TCONS_00019056-exon-sc0000317-1510915933:295466..295650Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1510915933:294742..294944TCONS_00019056-exon-sc0000317-1510915933:294742..294944Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1510915933:293558..293761TCONS_00019056-exon-sc0000317-1510915933:293558..293761Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1491911889:298181..298240TCONS_00019056-exon-sc0000317-1491911889:298181..298240Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1491911889:296924..297067TCONS_00019056-exon-sc0000317-1491911889:296924..297067Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1491911889:296090..296189TCONS_00019056-exon-sc0000317-1491911889:296090..296189Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1491911889:295466..295650TCONS_00019056-exon-sc0000317-1491911889:295466..295650Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1491911889:294742..294944TCONS_00019056-exon-sc0000317-1491911889:294742..294944Clytia hemisphaericaexon
TCONS_00019056-exon-sc0000317-1491911889:293558..293761TCONS_00019056-exon-sc0000317-1491911889:293558..293761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:293558..298240 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.5533	19.1363	4.79464	3.71832	41.3671	33.7894	35.7196	37.5426	24.8919	31.5873	29.2468	20.8765	27.4074	32.85	24.6026	27.6297	26.6718	30.4768	15.4807	14.3038	23.6169	25.5718	52.4019	45.703	42.8592	41.5167	13.8789	14.6608	37.0275	40.8786
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010541DUF1115
IPR013881Pre-mRNA_splic_Prp3
Blast
[Close]
BLAST of TCONS_00019056 vs. Swiss-Prot (Human)
Match: PRPF3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 4.985e-87
Identity = 162/275 (58.91%), Postives = 202/275 (73.45%), Query Frame = 3 
Query:    3 ELFTGVTNLVEHPIAKDAPSQPKSMPNMPVFLTXXXXXXXXXXXXXXXXXXXNVKIRLGLEPPPPPKVKISNLMRVLASEAVQDPTKVEAHVRAQMAARQKKHEQANEERKLTKEQRTEKKIKKLKEDTSLGVHIAVYSLLDLSNPSKKFKVDTNATQLYLTGSVLITKELVLVIAEGGPKSQKKFKRLMMHRIKWDEDTAQGRRQDKIDKKKHEYNVEKQMNKCQLVWEGTAIEKTFSDWKFHLFKTETEAQEFLRKSNIEHYWNLAKSRSLLE 827
            E + G+TNLVEHP   + P    +   + V+LTKKE+KK+R Q RRE +KE   K+RLGL PPP PKV+ISNLMRVL +EAVQDPTKVEAHVRAQMA RQK HE+AN  RKLT EQR  KKIKKLKED S GVHI+VY + +LSNP+KKFK++ NA QLYLTG V++ K++ +V+ EGGPK+QKKFKRLM+HRIKWDE T+  +  D  +  +      K+ NKC LVWEGTA +++F + KF    TE  A+E  +K   EHYW+LA S S+LE
Sbjct:  409 EDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAV---KKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLE 680
The following BLAST results are available for this feature:
BLAST of TCONS_00019056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRPF34.985e-8758.91U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo... [more]
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