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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019040 ID=TCONS_00019040|Name=TCONS_00019040|organism=Clytia hemisphaerica|type=transcript|length=2223bp
gattagttggattgtttgattggttcaaCAAATTTGATTGATCAGGTCTA
GTTGGGAGAGTGTGATGGTCATGAGTCTATTCTATTGGCTGGGCGGTTCC
AGTTATAGTCCGTTACCCCCCCCTACGGATGACATGGATTTCCATTACTg
tacaatttacttttgaaaaatttcaagatttctggAAGAATCTTGGAATT
TTCCGATATACTTAGCAAGAAAATAGAAGTGCatattttatggattttct
gaTATGAATGGTCAAATAATTAGGAAAATCCCGCATTTTCCAGAACCTTT
TTCACAATTTCTCATAatttccaagtgaaaaaaagttcaaaaaaataGTG
CTGTCCACAGGGGATGggtaattgtttttttctagaACTGCCTATTGATT
AACAAACTAACTTACATTGCTTTCCCTCAGCCAGTACAAaggcaggctag
ctctaaagtcCAAATGTGCATTTCCCGTAACTTTTATGGGAACAGTTAGG
GCTATACTGCCTAATTACTCCAGCAtaattttttaatgataatGACATAT
TGATGTGAATTTTACAACACCGCTGGTACAATATAATTTATCCCCTTTTA
GTATAGCTCTAACACTTCATAATGTATAAAATTTAcagcatatttggact
ttgtacccaatgCTGCATGCAAGCACTCAAGCTAAAGTTAAGGATGGTGC
TTGTATATGTGGTGCTTGTATTATGTGGATATGATATTTTCTTGGAAACT
TTCTTATGCAGTCTTGTTCTGTAAAATATTACAAATTAcaaagtttttga
taaaataaaaatttagataAATTTATAGATATTTTCACATTTTATGGGAA
AATGtttgacattttatttttttgcggGGAGGATAACTGTCATTACTATT
TATGGACTAAATAATTGACCATTTTGGGTTTTTTCAAggagtttttgttg
tttttataaagtCTTAGACATTTCTCTTTCAGTTCCTTAGATATACTTAA
AACAGTTGATGCAAACATTTTTACAAGCATTTTCTTGTATTATGCCGTCA
AAACATTCATACAAGctacaaaatatacaaaatcgACTAGAGAAGTTATG
CTGCCCTTTCATTGAAGAGGGAGGTGAACAATGGATGGCTGAGCTTCTTT
TACATCCAAGTGAAACAAGGCTGAAATTGCTTACATGGGCGTTATGCAAT
TTCGATAGTGATTTTGACGAGGTCATTTCCAAATCACTACCTGTAATCAA
TAGTCGGATTGATTCTAGGCAACAGCGTATTTTGTTTGTTCTAAATCTGC
TCAACCTTTGTAAGATTGATGACATTGAGATTGTCAAAGGAACAGCATCA
CATAAAAAGCAGTTAGCATTTTGGGACAACTTGATTGATTTGGTGTATAC
TTCTCAGACTGGACACAATTATTTATCAGATATCCAAACCAAAGAACAAT
CATCTGAAGAAACATCATATTACCTGAAGCCTGCTCAAGCTCCTTCATTG
TTTGAATCTTTCCAGTCTTCATGTACGTTTATGGATACTCTTATtcgtga
aaacaaaacaaaatctctCTTCTCAACAGAAATTCATTTGTTTTCACCTG
ACTTAGAAAGTCGAATcaataatgaaatgaaagtaCAGGAAACACCTAGT
ATTGACCTACTGACTGATACTGCTGTAAAAATATCTGAAGACATTGCAAT
CACTATAAAACAGATTGAAGGCTCTCTAGCTAAGTTTGCACCTTTTGATC
TTGATCAAAACATTGTCGAAAATTATTGTCGCAAAGTTGATCTATCATTG
AAAACGTTCTCGCAAATGATTGATAGCTTTTTGCATTGCCACACACATGA
TATTGAAGTATGGTGTCGTAAGGAACACCCAAATGTTAGTGAATTAGGTC
ATGCTGTCCATTCCACCAATAACATGCTTACAGGACCAACAAAATTGCAT
AAATCGTTGACCCAACTCAATAATACAATGTCAAAATTGTCACAATCTCT
GGTTGGAGACACTCAAGAGTTGCAATCAAAACACTCTGTTGATCTTGCCC
ATCTGACTGACACAGTCAATGTTTTACAAGCCTCTATGAATCGGTTACAa
agataactttttaaatttttatttatcctCTTTTTTGTCAatgtaaatat
ttatttataccTAATCGTTGATTTAAttaaagttgtgttttcaaGTTTTC
CAGATAGGACTAAATAAAAATTG Run BLAST on NCBI transcript from alignment at sc0000317:181500..183795- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019040 ID=TCONS_00019040|Name=TCONS_00019040|organism=Clytia hemisphaerica|type=transcript|length=2296bp|location=Sequence derived from alignment at sc0000317:181500..183795- (Clytia hemisphaerica)
GATTAGTTGGATTGTTTGATTGGTTCAACAAATTTGATTGATCAGGTCTA
GTTGGGAGAGTGTGATGGTCATGAGTCTATTCTATTGGCTGGGCGGTTCC
AGTTATAGTCCGTTACCCCCCCCTACGGATGACATGGATTTCCATTACTG
TACAATTTACTTTTGAAAAATTTCAAGATTTCTGGAAGAATCTTGGAATT
TTCCGATATACTTAGCAAGAAAATAGAAGTGCATATTTTATGGATTTTCT
GATATGAATGGTCAAATAATTAGGAAAATCCCGCATTTTCCAGAACCTTT
TTCACAATTTCTCATAATTTCCAAGTGAAAAAAAGTTCAAAAAAATAGTG
CTGTCCACAGGGGATGGGTAATTGTTTTTTTCTAGAACTGCCTATTGATT
AACAAACTAACTTACATTGCTTTCCCTCAGCCAGTACAAAGGCAGGCTAG
CTCTAAAGTCCAAATGTGCATTTCCCGTAACTTTTATGGGAACAGTTAGG
GCTATACTGCCTAATTACTCCAGCATAATTTTTTAATGATAATGACATAT
TGATGTGAATTTTACAACACCGCTGGTACAATATAATTTATCCCCTTTTA
GTATAGCTCTAACACTTCATAATGTATAAAATTTACAGCATATTTGGACT
TTGTACCCAATGCTGCATGCAAGCACTCAAGCTAAAGTTAAGGATGGTGC
TTGTATATGTGGTGCTTGTATTATGTGGATATGATATTTTCTTGGAAACT
TTCTTATGCAGTCTTGTTCTGTAAAATATTACAAATTACAAAGTTTTTGA
TAAAATAAAAATTTAGATAAATTTATAGATATTTTCACATTTTATGGGAA
AATGTTTGACATTTTATTTTTTTGCGGGGAGGATAACTGTCATTACTATT
TATGGACTAAATAATTGACCATTTTGGGTTTTTTCAAGGAGTTTTTGTTG
TTTTTATAAAGTCTTAGACATTTCTCTTTCAGTTCCTTAGATATACTTAA
AACAGTTGATGCAAACATTTTTACAAGCATTTTCTTGTATTATGCCGTCA
AAACATTCATACAAGCTACAAAATATACAAAATCGACTAGAGAAGTTATG
CTGCCCTTTCATTGAAGAGGGAGGTGAACAATGGATGGCTGAGCTTCTTT
TACATCCAAGTGAAACAAGGCTGAAATTGCTTACATGGGCGTTATGCAAT
TTCGATAGTGATTTTGACGAGGTCATTTCCAAATCACTACCTGTAATCAA
TAGTCGGATTGATTCTAGGCAACAGCGTATTTTGTTTGTTCTAAATCTGC
TCAACCTTTGTAAGATTGATGACATTGAGATTGTCAAAGGAACAGCATCA
CATAAAAAGCAGTTAGCATTTTGGGACAACTTGATTGATTTGGTGTATAC
TTCTCAGACTGGACACAATTATTTATCAGATATCCAAACCAAAGAACAAT
CATCTGAAGAAACATCATATTACCTGAAGCCTGCTCAAGCTCCTTCATTG
TTTGAATCTTTCCAGTCTTCATGTACGTTTATGGATACTCTTATTCGTGA
AAACAAAACAAAATCTCTCTTCTCAACAGAAATTCATTTGTTTTCACCTG
ACTTAGAAAGTCGAATCAATAATGAAATGAAAGTACAGGAAACACCTAGT
ATTGACCTACTGACTGATACTGCTGTAAAAATATCTGAAGACATTGCAAT
CACTATAAAACAGATTGAAGGCTCTCTAGCTAAGTTTGCACCTTTTGATC
TTGATCAAAACATTGTCGAAAATTATTGTCGCAAAGTTGATCTATCATTG
AAAACGTTCTCGCAAATGATTGATAGCTTTTTGCATTGCCACACACATGA
TATCGAGNGTTGATCTATCATTGAAAACGTTCTCGCAAATGATTGATAGC
TTTTTGCATTGCCATACACATGATATTGAAGTATGGTGTCGTAAGGAACA
CCCAAATGTTAGTGAATTAGGTCATGCTGTCCATTCCACCAATAACATGC
TTACAGGACCAACAAAATTGCATAAATCGTTGACCCAACTCAATAATACA
ATGTCAAAATTGTCACAATCTCTGGTTGGAGACACTCAAGAGTTGCAATC
AAAACACTCTGTTGATCTTGCCCATCTGACTGACACAGTCAATGTTTTAC
AAGCCTCTATGAATCGGTTACAAAGATAACTTTTTAAATTTTTATTTATC
CTCTTTTTTGTCAATGTAAATATTTATTTATACCTAATCGTTGATTTAAT
TAAAGTTGTGTTTTCAAGTTTTCCAGATAGGACTAAATAAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019040-exon-sc0000317-1575043694:181950..183795 | TCONS_00019040-exon-sc0000317-1575043694:181950..183795 | Clytia hemisphaerica | exon |
| TCONS_00019040-exon-sc0000317-1575043694:181500..181876 | TCONS_00019040-exon-sc0000317-1575043694:181500..181876 | Clytia hemisphaerica | exon |
| TCONS_00019040-exon-sc0000317-1510915933:181950..183795 | TCONS_00019040-exon-sc0000317-1510915933:181950..183795 | Clytia hemisphaerica | exon |
| TCONS_00019040-exon-sc0000317-1510915933:181500..181876 | TCONS_00019040-exon-sc0000317-1510915933:181500..181876 | Clytia hemisphaerica | exon |
| TCONS_00019040-exon-sc0000317-1491911889:181950..183795 | TCONS_00019040-exon-sc0000317-1491911889:181950..183795 | Clytia hemisphaerica | exon |
| TCONS_00019040-exon-sc0000317-1491911889:181500..181876 | TCONS_00019040-exon-sc0000317-1491911889:181500..181876 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:181500..183795 - |
Blast
The following BLAST results are available for this feature:
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