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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019027 ID=TCONS_00019027|Name=TCONS_00019027|organism=Clytia hemisphaerica|type=transcript|length=846bp
NNTGGAGAAATGTTTGGAGAAATGTTTGGAGAAATGTCCTCTCTGCTTCT
GATTTGAGACTTGTCTCAAAACATAATCTTAAAGAATTACGGAAACCGCA
AAGGCGTTTACTCATTCGTTGGGGCAGCactaaacaaaaagttaaaaaaa
actaataacgTATTCTCTGACCTTTTCTTCTCACAATTTCCATCATCTGC
TTGTTTAGTGATTCAATAGTTTTGTTTATATAGTTCGGGCTCAAGTTCAT
TATGGCGTTCTTTACTCGTGTactaaattcttcaaaagtttcTTTTACAA
TCCTTTTCGCAAGTGCTTCCTCTTTTAAATTTGTCGCCAAGATCTTAAAG
CATTTTTCAATAACGTTTACATCAGGTGACCGTGCAGGTATTGGAAATAA
CTCTGAACCGATATGAGCAAAGGCTTTTCCGGCTGCCTTTGAGGTCTGCA
CGGGACAATTGTCCTGTAATATAAGTTTCGATTTATTAGAACAGCGCGAT
AAGGCTTCTGGGAATTTTCTCCGTATCATCCGTGAGAGCTTAGCCCCGTT
GAGCTTTCCCTCATATTGTTCACATAATACGACACCTGAGTTGTGCGATA
TGCCAACCATAAAGGCGACTGACTTTCCTCCGTTACCCGACTTCCTTCCT
TTAATTGTGCAGTCAATATCAAGGCCCTCAGACCGTTTTCTCCAGTTTCT
TGCCCCGGGTGCACGGGCTTGGTCATGTggatttgttttaaaaagaaatg
atgTTCCATCGATAAACATGCCTATCTCTTCCCTCCAAAATTCTTTGCTC
TTGCGCATGTTCTGACGAGCAAACTTAAGGCGTTTGCGCAAGTCNN Run BLAST on NCBI protein sequence of TCONS_00019027-protein >TCONS_00019027-protein ID=TCONS_00019027-protein|Name=TCONS_00019027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
DLRKRLKFARQNMRKSKEFWREEIGMFIDGTSFLFKTNPHDQARAPGARN
WRKRSEGLDIDCTIKGRKSGNGGKSVAFMVGISHNSGVVLCEQYEGKLNG
AKLSRMIRRKFPEALSRCSNKSKLILQDNCPVQTSKAAGKAFAHIGSELF
PIPARSPDVNVIEKCFKILATNLKEEALAKRIVKETFEEFSTRVKNAIMN
LSPNYINKTIESLNKQMMEIVRRKGQRIRY Run BLAST on NCBI transcript from alignment at sc0000317:371587..372432+ Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019027 ID=TCONS_00019027|Name=TCONS_00019027|organism=Clytia hemisphaerica|type=transcript|length=846bp|location=Sequence derived from alignment at sc0000317:371587..372432+ (Clytia hemisphaerica)
NNTGGAGAAATGTTTGGAGAAATGTTTGGAGAAATGTCCTCTCTGCTTCT
GATTTGAGACTTGTCTCAAAACATAATCTTAAAGAATTACGGAAACCGCA
AAGGCGTTTACTCATTCGTTGGGGCAGCactaaacaaaaagttaaaaaaa
actaataacgTATTCTCTGACCTTTTCTTCTCACAATTTCCATCATCTGC
TTGTTTAGTGATTCAATAGTTTTGTTTATATAGTTCGGGCTCAAGTTCAT
TATGGCGTTCTTTACTCGTGTactaaattcttcaaaagtttcTTTTACAA
TCCTTTTCGCAAGTGCTTCCTCTTTTAAATTTGTCGCCAAGATCTTAAAG
CATTTTTCAATAACGTTTACATCAGGTGACCGTGCAGGTATTGGAAATAA
CTCTGAACCGATATGAGCAAAGGCTTTTCCGGCTGCCTTTGAGGTCTGCA
CGGGACAATTGTCCTGTAATATAAGTTTCGATTTATTAGAACAGCGCGAT
AAGGCTTCTGGGAATTTTCTCCGTATCATCCGTGAGAGCTTAGCCCCGTT
GAGCTTTCCCTCATATTGTTCACATAATACGACACCTGAGTTGTGCGATA
TGCCAACCATAAAGGCGACTGACTTTCCTCCGTTACCCGACTTCCTTCCT
TTAATTGTGCAGTCAATATCAAGGCCCTCAGACCGTTTTCTCCAGTTTCT
TGCCCCGGGTGCACGGGCTTGGTCATGTggatttgttttaaaaagaaatg
atgTTCCATCGATAAACATGCCTATCTCTTCCCTCCAAAATTCTTTGCTC
TTGCGCATGTTCTGACGAGCAAACTTAAGGCGTTTGCGCAAGTCNN Coding sequence (CDS) from alignment at sc0000317:371587..372432+ >TCONS_00019027 ID=TCONS_00019027|Name=TCONS_00019027|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000317:371587..372432+ (Clytia hemisphaerica)
ctaataacgTATTCTCTGACCTTTTCTTCTCACAATTTCCATCATCTGCT
TGTTTAGTGATTCAATAGTTTTGTTTATATAGTTCGGGCTCAAGTTCATT
ATGGCGTTCTTTACTCGTGTactaaattcttcaaaagtttcTTTTACAAT
CCTTTTCGCAAGTGCTTCCTCTTTTAAATTTGTCGCCAAGATCTTAAAGC
ATTTTTCAATAACGTTTACATCAGGTGACCGTGCAGGTATTGGAAATAAC
TCTGAACCGATATGAGCAAAGGCTTTTCCGGCTGCCTTTGAGGTCTGCAC
GGGACAATTGTCCTGTAATATAAGTTTCGATTTATTAGAACAGCGCGATA
AGGCTTCTGGGAATTTTCTCCGTATCATCCGTGAGAGCTTAGCCCCGTTG
AGCTTTCCCTCATATTGTTCACATAATACGACACCTGAGTTGTGCGATAT
GCCAACCATAAAGGCGACTGACTTTCCTCCGTTACCCGACTTCCTTCCTT
TAATTGTGCAGTCAATATCAAGGCCCTCAGACCGTTTTCTCCAGTTTCTT
GCCCCGGGTGCACGGGCTTGGTCATGTggatttgttttaaaaagaaatga
tgTTCCATCGATAAACATGCCTATCTCTTCCCTCCAAAATTCTTTGCTCT
TGCGCATGTTCTGACGAGCAAACTTAAGGCGTTTGCGCAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019027-exon-sc0000317-1491911889:371587..372432 | TCONS_00019027-exon-sc0000317-1491911889:371587..372432 | Clytia hemisphaerica | exon |
| TCONS_00019027-exon-sc0000317-1510915933:371587..372432 | TCONS_00019027-exon-sc0000317-1510915933:371587..372432 | Clytia hemisphaerica | exon |
| TCONS_00019027-exon-sc0000317-1575043694:371587..372432 | TCONS_00019027-exon-sc0000317-1575043694:371587..372432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:371587..372432 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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