TCONS_00019020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019020
Unique NameTCONS_00019020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019020 ID=TCONS_00019020|Name=TCONS_00019020|organism=Clytia hemisphaerica|type=transcript|length=2795bp
AAAAGACGCAGCTTAACGGCATTCGATAAAATAGCAAGGCATTCAACTAA
ATGACTAAAAAGGCATCAAATATGAATTTCATACAACGAAACTTTATTAA
TAATTGAATTAGGATTTGTGCAAGAGTATTATGTAGAATATGTATctcta
attttaaaatactttagTTGACTTTGGAAGCTAGAGTAACACGGACACAA
ATTTAGTAAATCAAACGTAACAAAAGTAACGGAGGCAAAGGATTATGGGA
AAATCAGAAGACAAAGGATTGTTGAATCGTGGCGGAGGAGAGACGATCAA
TTTGAGAGAAACAAGTCCTGAAGGAAGTTTGTGTAAAGATGGCGGCGAAA
GTTCGACCTCCTCACTCAATGATAATGCTCCTTGGTATATACGATTCTGG
AGACGCGAGAAGCTGATGATTTTCATCATCATTGGTGTTTGTTTGGGATT
TCTCGTTGGTATCTCTTGTAATAAACCCATTCAAAACCTCGATCAACCAA
TCCGAAAAAATGTTCTCCTCATCTTAGGATTCCCAGGTGAACTTTTGATG
CGaatgttgaaaatgttgatccTCCCTTTAATTGTCTCCAGCTTGATTGT
CGGATTGGCGGAGCTTGACCAAAGGGCGTCTGGACGTTTGGGAAAAAGAG
CGGTTTTGTATTACATGGGAACGACAATGTGTGCTGTCATCTTGGGTATC
ATTCTGGTAGTAGCTATATATCCTGGTGGAAATAAACAAGAGGCTGAAGG
TGAGAAAGAAGATAAACGAGTTCGTCCGTTAGATTCGTTCCTCGATCTAA
TTCGCAACATGTTTCCGGACAATCTTGTTAAAGCTTGTATAGCACAACTG
GTGACAGGAGTCAAGTTTGAGAAACATGATGAAAGGACGACTGTTTGGAG
TAGTAATGAGACATTGGCTGACCAAATGAATTGGAATCATTGGGAAGTCA
ACCAAACAGCTTTACAAAATCAAACGAATTCAGAATGGAAATATTTGACT
TACCAGAGTGTACTAAATGGAACAAACGTAACAATGGTTAAAGAATGGCG
TGAAGTCAAGATGCCTGATAAACCATCAGACAAAGGAAGCACCAATGTTC
TCGGTCTCGTAGTTTTCTCCATCGTCGTTGGTCTAATGTTAGGGAAGATG
GGAAAGAAAGGACGCGTCTTCGTTGATTGGATGATTGTGTTAAATGATAT
CGTTATGGAGTTGGTTGGTTGGGTCATGTGGTATTCACCTATTGGTATAT
GGAGTTTGATTTCAGCTAAATTTGCATCCATGAATGATATTGAAGGAACA
TTTGAGAAACTGGCTCTCTATATGGTGACTGTCATTGTTGGTTTGATTAT
CCATTCATTCTTGGTGTTGCCTGCTATATTCGCTGTTGTCACAAGAAAGA
ATCCGTTCAGATTCGCTACTGGTCTGATCAAAGCATTACTAACGGCCTTC
GGTACAAGCTCCAGTTCGGCAACTCTGCCAGTCACGTTTTCCTGCCTCGA
AGATAATCTCCGCGTGGATAAGCGTGTCACACGGTTCGTGCTCCCTATCG
GTGCCACTATCAACATGGATGGAACCGCCTTGTATGAAGCGGTCGGAGCA
ATCTTCATTGCTCAAAACTCAGGTCTTGATTTAGATTTTGGTCAATATGT
TGCCGTTAGTTTAACAGCAACTCTAGCCTCAATTGGAGCTGCCGGAATAC
CACAGGCTGGCTTGGTGACCATGTTGATTGTATTGCAGACGATTGGTCTC
CCAGAAGATGCAGTGACCCTCATCTTGGCAGTGGATTGGTTCTTGGATCG
AGTACGAACGACTGTTAATGTTTTAGGTGATGCTTATGGAGCTGGTATCG
TTCACCACTTGTCACAACGAGAACTCCAACAAATGGATGAAGATCAAAAA
GCTTTGGATGAAGTGCACCGTGTTGAAGaaggatttgaaaattttactgg
aAAACATGATGAAAATCCACCTAATATGAATATGTATAATGGCCTTACTG
CTCTGTAAGAATTTTGAGAATTAATGCTCCCTCTTAGAGCTCTTTTAAAA
ATACTACAAAGCCAAAGAGTACTTCCCAATTCATAAAGTCGTTTCAACAG
ACTTACTGCTCTATAAAAATTTAGTACCAATATTCCTTGTTAAAAAAATA
CTACCAATCCAAATAGTACTAGGCTCTTTCTAATTCATAAAGACGCTTCA
ATGGCAATGATACAGCTCTGTAAAGATTTTGAGTATTAATGTTGCTTATT
AGAACCCTCCGAGATCTTCCAAACTCAGTCGCTTAAATGACAACAATTCA
ACCCGTGAAAACCCTTTTCGAGGAAGGCGATAGACTTTCCTTAAGTAAAT
TGGGGTGTATAAGCGCGGTTTTTAGTCATACAGTAATGGTAGCGGGTTAA
TATTTCGGTAATTAATTAAAACTAAAGTAATTAATGTAATTAATTACCTC
AGCGGAGTGATCAAACATTCGAAAGGGTAACTAACTCCCTTATACTGTAA
ATATTAGTTTTAACTTATAATTTTAatgcgaaaatgaaaatttatgattt
ttactaattgttataaattaaaaaaagagatCTTTTGTATATCATGATTC
TTTATATGAGTGTAGTAATGATTGCGCtttagattttttcttcttgtaaA
TACTTTTTTCTGTATCTTTaatatcaaaaaaagaattaataaacttcagt
tttaaaaaattaaaaaaaagctttcatctcctattcatgatatgcaccac
tgcaatgacttcacgaaattatgcaacttttctgtttttgttcca
Run BLAST on NCBI

transcript from alignment at sc0000317:283685..292641+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019020 ID=TCONS_00019020|Name=TCONS_00019020|organism=Clytia hemisphaerica|type=transcript|length=8957bp|location=Sequence derived from alignment at sc0000317:283685..292641+ (Clytia hemisphaerica)
AAAAGACGCAGCTTAACGGCATTCGATAAAATAGCAAGGCATTCAACTAA
ATGACTAAAAAGGCATCAAATATGAATTTCATACAACGAAACTTTATTAA
TAATTGAATTAGGATTTGTGCAAGAGTATTATGTAGAATATGTATctcta
attttaaaatactttagTTGACTTTGGAAGCTAGAGTAACACGGACACAA
ATTTAGGTAAGTTCCAAGATTTGATAACGTACGCGTAGAGCTTATGACCT
TAATGACAGTGAATTAATttctctcgctaattcgaataCGAGCGGTAATA
TTCGAATTGTACAGTTTTTCAAATATCTTNTAGAATATGTATCTCTAATT
TTATAATACTTTAGTTGACTTTGGAAGCTAGAGTAACACGGACACAAATT
TAGGTAAGTTCCAAGATTTGATAACGTACGCGTAGAGCTTATGACCTTAA
TGACAGTGAATTAATttctctcgctaattcgaataCGAGCGGTAATATTC
GAATTGTACAGTTTTTCAAatatctttataagaatcaaaagcctaaaatt
ttttgttaaatttcaggtagaatttttttgtttaaccaTGTGACATTTTc
tggattttgaatttttaaattatagtttgttcttgtttcctttttgtttt
ttttcgcacGTCCGAGGCAATACTTGAAGTTagttacacccccttctcat
aggTAGGATTTTTTGAGCCAGTGGGTATAAAAATAACAAACCGAAACTcg
atattctcatattttttgtgagtggggatttcaattctttttcaagtcag
aaaattcagctgGGATGGGAAAattagtaaatattttgcaagcgaggatt
ggtttatttgattattttcagttgggATAAAATTTGAGGATTATTTTCCA
TCGGGGGcgatattttggcaaatttttccagtggatctgtgagaaggggg
tatttAGTTCGAagtatagaaagatttgaataatagaaaCTCGAATAAAC
GAGGGTATTAAGACTTAATCAAATCAACTCGAGAAATTATCTTTCCTTTC
TTGTCATCTAAGTCTCGTAGCAAAATTGAACAGTCCTAGACCACAAAAAC
GAAGTTGTTTTTGATCAAGAAATTTGCCTGTTATCTGTAAAGGAAGAGGA
CATACCCAGGAAGGGGAAAAAAGAGAGACTTTTTCACTGTAACACGTTAA
AAATAAAGTCGACAACAAGTATAAGGTGAAGAATTAAAAAGTAGCgaatt
caacttcaaaaaaacatCTGCTTTTACTTTagtgaaaaatcatcaaattc
tCAGATTCCCAATTCATAGCCTATAAGTTTATGAATAGATTTAAATAAGA
AACAGCGTGAGCGATAGCAAAACCTGTTTAATATTGTGAACTTGGTGTGA
AGAACAAATTGGCTACACATACTCCATATAGCTCAGTTTTTAGTGAGAAT
TTCTCATTCAAGATAAGGGTATTCCATGTAAAGTCAGTCCAAGACGGTTT
TTACAGTCTGATGTACACATGAAGGGTTCCAGAACtgtaaaaaaaatcga
atttagcgctgtcctcacttactaaaataaaaataagtttaaaaagctaa
aagaataacaaaatttgattggctgcaTTTTCAACTGTTAACTCGTAGCC
GTAGTATATGGCAAGGGTAATACAAGTTTATACAGGCTTtaaggccttac
tcttggtatATAGGTGGTGGTTTCACGCTGGAAACAAAGGAAGGTATGGT
TTAGCCTAGGGTATTCCAATCGGCCTAGAGTGGGTacataaaaagttaaa
agatttttattgaATTGTTGATAgattattaaaaaagaaaatcaccCAAA
GGATAGCCAGACAATTTATTCAGGGAAGTAACCTGGAACCCGAGAAAATC
CTGCCActcagatttttccaaaaaagagaaataaatcATTGAAATCGACG
AAACAGCAAAAGCTTTTTAGACAATCTAAGAatggcaaacgatagccctt
gatccaataagcataaatatagtataatatcaGGGATGACCTAAGAAATT
TTTATAggaaatgagctagaatgctaagcagcCCCAGACCTGACCTGAAA
ATtcaagttgcttataaaaaatgggTATTTGACGTAGAAAATCTTGATAT
GAAGGAAAAGGGGTTGCACTGAAAAACCAAACTAAAACCAAATCACGACG
AGAATTAAATGAAAGATTGAGTTGAATTTAGAGTTCAAAAGAGGAGTACG
ATAGCTGCTGCTTATCATGCCAAATTCTTTTCAACTAACATTAATAAGTA
CAGTTAAGCTGATTTAGAATGTTGCAACTTGTATAATAAAATTGTGTTAA
ATGTTATGATATTCTGAGAAGAAACTTAACGGTTTTTAAAATCTTCTCGT
ACAAGCGTCTATTTTCTTTCAActattttatgcaaaaaaatagtCACCTG
CAATTGCCTGTAATTTTAAATAAACGGTCACGATTTCGCTTCTTTTCCAG
TAAATCAAACGTAACAAAAGTAACGGAGGCAAAGGATTATGGGAAAATCA
GAAGACAAAGGATTGTTGAATCGTGGCGGAGGAGAGACGATCAATTTGAG
AGAAACAAGTCCTGAAGGAAGTTTGTGTAAAGATGGCGGCGAAAGTTCGA
CCTCCTCACTCAATGATAATGCTCCTTGGTAAGATGACGTCAATTTAACA
AAGTTTTCCTCCCCTTTGTGCTAGTAACGTGAAAAGCACTGGGttcgaat
ctcaatcaaatcCTCAGCAGTGGTCCCCTTTTAAATCTAGTTTGTTGCGT
TTTTTCGTGTTGGCAGCTTTTTTATGGCCCTTTTCTGGATGAGCTTGTGA
AAAGGGTGCTTTCAAAACGTAGACTGCTTGCATCCTTTTGGATTCGTGTG
GTATGTAGAGGGATGCGATTCAAACtaatttaaattgttttaaatcataa
atttcagtgcttcttggaaaaattttcgaatGCAAAAAAATATCTCCACA
AAACTCCTTGCGTAACTTTTTGACTATAGGTACGCTGACAATATTGAAAT
ATGAACTGAAACATGTGATCAAATTTAACCCCAATTTTAAAATCCAATCT
ATATTTTCAGGTATATACGATTCTGGAGACGCGAGAAGCTGATGATTTTC
ATCATCATTGGTGTTTGTTTGGGATTTCTCGTTGGTATCTCTTGTAATAA
ACCCATTCAAAACCTCGATCAACCAATCCGAAAAAATGTTCTCCTCATCT
TAGGATTCCCAGGTAAGCGAGACATACAGTATTAATGGTTTAGTGGTATA
GTAATCATTGTTGAAAATTATGTCCAATTTTTGAGTGCATCTTCTTTCTT
TATTTGAAGGCAATGCacgtttttaataagaacaaactatataagagtaT
GAGgcatggccaaaatattaagaacatcttaatgcTTCGAGgaatctaaa
acacccaatttctaaggaaaatggacaaaaatattcaaaaaatggcgaaa
ataagaacatgttaagaacattttttaaggcttaggactaaaaaagttaa
aaccatTTGAGTGCTTCAAAATATTTGGATgtacaaaaaaaacaagatcA
AAAAGGAATTATTCAGTATAGAAACTAAAACAAATACACAAAATGGAAGA
ATTATTTTCTGAAAGGTGAATCACGAAGAATAAACAGAGAAGAGAAGAGA
AGTAGAGGAACACAACACACCTCTATCGAGCCCTTCACCTAAGCAACTGA
CGTCAAACATGGAGAGAGTAAAATCACTGGGGAATAAAATGAATGACTCA
TTCAATCTAGAAACTTAATATCATCATCTAAGGGAGTTTCTAAGGTCTCT
TGATGTTTCATAgagaaaaaaagaggaaaaacgGAAAAAGTGTTTTCGAT
TTTTGTTTCCTTATCTCGTGGTTCAATCTAAATTATTTATTGAATGTCTA
TTTCGGTACTACTATAGACCCCATTCATGGAATTTAacattgcataaatt
atgctaCTATTGTAGTATTTAACATAAATTATTCATGCAAATCATGTGAT
TCTTTTGAGCTACAGATAGATGAATTCATTTAAATCCGCCAGAATTATCG
GAAATAAAActccaaaaaaatattaaatcatATATAAAATCGTCTAGACA
ACAAAATTAAAATGATCATacatctttttataagaacaaattatataaga
atataaggcttcgatggctaaaatataatgaacaagttaagaacattttt
aagtctTCGCGAACTCTAAGACAGCtaatttctaaggaaaatggacaaaa
atactaaaaaaatggcgaaaataagaacatgttaaaagctcaaaaagttt
taagaacacccgaaggcttcaaaacttttggatgttcttataaaaagacg
tgtAGTATACTTTGCTAACTACAACGATTTATATGTcctaaaagaattga
aatctcaAATCtactttgaaaataatgaaagttCAGCAGTAGGGACAACT
AAAACTAAATCTCAGAAATAAAGCAATAACTCAAGATTCGAAACATCTCA
TGTAGGAAGAATCCTAAAAAACATCTACCACCAAAcacttgaaaaacaaa
aatactcTTTACGAAACTTACTGCACAATTTTGGACTGATAGTTTCCTCT
GGTGAATTTCCATTGCATGTTCATGAATATTGGCTCTTTCCAGGTCCCCT
TGGTTTGTTACATACTTCAAAATCACTGAAATATACGAAAAAGTGTTCGT
TCTACTACAACCCCTACAATAATTTGAAAAGACTTTTGAATTgtcaacaa
aaaagtttttcatgttATGTTAAGTAAAGTAATTTTCGCCATTATGGAAT
CAAACGCTCGATTTGCATAAGGGATCGCCTCAgcaaattcgaacgtttgc
ttccataatggcgaataatgcagaaaaaaatacattttagtgggaattaa
atttggcggattttgggtacccaaatccgccaaattttctttaggccaaa
tttcttcttttaatgtacacgttttttataagaacaaactacataagaac
ataaggcttggatggccaaaatgttaagaacaagttaagaacattttatg
gctttgtggtctcaaaaacaccctttttcttaggaaaatggtcaaaaata
ctcacaaaatggtcaaaataagagcatgctaaaaacatttttaggcttaa
aacccaaaaagtttttaagaacatccgaaggcttcaaaaattatggatgt
tcttataaaaaaaactactttttttgtAATACTTTTAATCAGAAAACTTA
GTATGATATTATATTGTACCTTATTGTCTTTTATTTCCCAGGTGAACTTT
TGATGCGaatgttgaaaatgttgatccTCCCTTTAATTGTCTCCAGCTTG
ATTGTCGGATTGGCGGAGCTTGACCAAAGGGCGTCTGGACGTTTGGGAAA
AAGAGCGGTTTTGTATTACATGGGAACGACAATGTGTGCTGTCATCTTGG
GTATCATTCTGGTAGTAGCTATATATCCTGGTGGAAATAAACAAGAGGTA
TGtatcttttccttttttaagaagaaatatttatttttcagctGAAAATT
GGCTAATataaaacctaagaacaaattcaGAACAATCCTAAGCCCAAGAA
GTTTTTAATTACGATAGCTCAGtgtattaagaacatcgtaagagcAGATA
AGcctgagaatttaaaaaatattaagaagagccaagcctgagccaaaatt
tactggttctcataaaaaaagcgCGTAATGAACATTATCCCAATAACATT
CTTTTCGGCTTAATAGGCTGAAGGTGAGAAAGAAGATAAACGAGTTCGTC
CGTTAGATTCGTTCCTCGATCTAATTCGCAACATGTTTCCGGACAATCTT
GTTAAAGCTTGTATAGCACAACTGGTGACAGGAGTCAAGTTTGAGAAACA
TGATGAAAGGACGACTGTTTGGAGTAGTAATGAGACATTGGCTGACCAAA
TGAATTGGAATCATTGGGAAGTCAACCAAACAGCTTTACAAAATCAAACG
AATTCAGAATGGAAATATTTGACTTACCAGAGTGTACTGTGagtagattt
tcaaattcaaatccaTATGTTAAATCCTTCATTTATCCAAATTTGAGTGA
CCtgaaaaatccaataaaaaatAGCTTATGCAAGATCAGTACCCAGCTTC
AGTATGTGTATACtagtacaatcaaggtcataatatttgagaaaaaaggg
aaattccccaggaagttttgaaaccacaatcgatttgtaagtgctctaaa
gtaggttcgaagggtagattTATAACGCTAAACATGGAATCTGaggattt
aaaagttcaaaaatagtccaataaggctcagaatatagactggaagtctg
ccaaaccatcccaaattgaaatattcgattaaatagatttgatagctcaa
aatcgattttttcgccggaactttaaatcttgaaaaacgttaaaataacc
ggaattctcaatatatttcgaccatgattgtagattgGCTTTGAGTTAAT
GAAATGAACAGAAAAGTCTTACCCTTTTCCCTCTTTGATTCTAACATAGA
AATGGAACAAACGTAACAATGGTTAAAGAATGGCGTGAAGTCAAGATGCC
TGATAAACCATCAGACAAAGGAAGCACCAATGTTCTCGGTCTCGTAGTTT
TCTCCATCGTCGTTGGTCTAATGTTAGGGAAGATGGGAAAGAAAGGACGC
GTCTTCGTTGATTGGATGATTGTGTTAAATGATATCGTTATGGAGTTGGT
TGGTTGGGTCATGTGGTATTCACCTATTGGTATATGGAGTTTGATTTCAG
CTAAATTTGCATCCATGAATGATATTGAAGGAACATTTGAGAAACTGGCT
CTCTATATGGTGACTGTCATTGTTGGTTTGATTATCCATTCATTCTTGGT
GTTGCCTGCTATATTCGCTGTTGTCACAAGAAAGAATCCGTTCAGATTCG
CTACTGGTCTGATCAAAGCATTACTAACGGCCTTCGGTACAAGCTCCAGT
TCGGCAACTCTGCCAGTCACGTTTTCCTGCCTCGAAGATAATCTCCGCGT
GGATAAGCGTGTCACACGGTTCGTGCTCCCTATCGGTGCCACTATCAACA
TGGATGGAACCGCCTTGTATGAAGCGGTCGGAGCAATCTTCATTGCTCAA
AACTCAGGTCTTGATTTAGATTTTGGTCAATATGTTGCCGTTAGTTTAAC
AGCAACTCTAGCCTCAATTGGAGCTGCCGGAATACCACAGGCTGGCTTGG
TGACCATGTTGATTGTATTGCAGACGATTGGTCTCCCAGAAGATGCAGTG
ACCCTCATCTTGGCAGTGGATTGGTTCTTGGATCGAGTACGAACGACTGT
TAATGTTTTAGGTAAGGAaagtttattttattgtttggCTATGATGATAA
AAGAACTAAATTACTTTTTGGCCTGCTATATGCTGCTATTTTAGCTATAA
TACCAACCTAAATGTGACAAAAAATACAAGAGTAAATCAATGACAATTTT
CCAGGGAAGTGTTCCTTAACAAATGTTGCAAACAACTTTTTCCTGTAAAC
TATAGAATTTAGTAAACTTAAAGTGTAAAAACAGCAAATAGATAAAACAG
AAATGAAATTTCATGTGATGTTGAAATTCTCGTCATCTTTTACGTGACTG
CGTTAGTATAGGGCAACAAAAATGTTATGACTTTTATAAAGGAAGCTAAA
AATTTAACAATTTCCTAATTATGCTATTAATTATCAAATAAAACTAAAGG
TTTTTTTCATGTTatgttaagttacgtaactttCGCCATTCtgaaagcaa
acgttcgatttgcgtaagggatTGCTTCTACAGAAGTTAACAAATCATGA
ATAAACCTTACCATATATTTATTCACCAGGTGATGCTTATGGAGCTGGTA
TCGTTCACCACTTGTCACAACGAGAACTCCAACAAATGGATGAAGATCAA
AAAGCTTTGGATGAAGTGCACCGTGTTGAAGaaggatttgaaaattttac
tggaAAACATGATGAAAATCCACCTAATATGAATATGTATAATGGCCTTA
CTGCTCTGTAAGAATTTTGAGAATTAATGCTCCCTCTTAGAGCTCTTTTA
AAAATACTACAAAGCCAAAGAGTACTTCCCAATTCATAAAGTCGTTTCAA
CAGACTTACTGCTCTATAAAAATTTAGTACCAATATTCCTTGTTAAAAAA
ATACTACCAATCCAAATAGTACTAGGCTCTTTCTAATTCATAAAGACGCT
TCAATGGCAATGATACAGCTCTGTAAAGATTTTGAGTATTAATGTTGCTT
ATTAGAACCCTCCGAGATCTTCCAAACTCAGTCGCTTAAATGACAACAAT
TCAACCCGTGAAAACCCTTTTCGAGGAAGGTGATAGACTTTCCTTAAGTA
AATTNTAATTCGACCCGTGAAAACCTTTTTCGAATTAGGCGATAGACTTT
CCTTAAGTAAATTGGGGTGTATAAGCGCGGTTTTTAGTCATACAGTAATG
GTAGCGGGTTAATATTTCGGTAATTAATTAAAACTAAAGTAATTAATGTA
ATTAATTACCTCAGCGGAGTGATCAAACATTCGAAAGGGTAACTAACTCC
CTTATACTGTAAATATTAGTTTTAACTTATAATTTTAatgcgaaaatgaa
aatttatgatttttactaattgttataaattaaaaaaagagatCTTTTGT
ATATCATGATTCTTTATATGAGTGTAGTAATGATTGCGCtttagattttt
tcttcttgtaaATACTTTTTTCTGTATCTTTaatatcaaaaaaagaatta
ataaacttcagttttaaaaaattaaaaaaaagctttcatctcctattcat
gatatgcaccactgcaatgacttcacgaaattatgcaacttttctgtttt
tgttcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010663XLOC_010663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019020-exon-sc0000317-1491911889:283685..283890TCONS_00019020-exon-sc0000317-1491911889:283685..283890Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:283685..283890TCONS_00019020-exon-sc0000317-1510915933:283685..283890Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:283685..283890TCONS_00019020-exon-sc0000317-1575043694:283685..283890Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:286185..286362TCONS_00019020-exon-sc0000317-1491911889:286185..286362Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:286185..286362TCONS_00019020-exon-sc0000317-1510915933:286185..286362Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:286185..286362TCONS_00019020-exon-sc0000317-1575043694:286185..286362Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:286795..286946TCONS_00019020-exon-sc0000317-1491911889:286795..286946Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:286795..286946TCONS_00019020-exon-sc0000317-1510915933:286795..286946Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:286795..286946TCONS_00019020-exon-sc0000317-1575043694:286795..286946Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:289026..289231TCONS_00019020-exon-sc0000317-1491911889:289026..289231Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:289026..289231TCONS_00019020-exon-sc0000317-1510915933:289026..289231Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:289026..289231TCONS_00019020-exon-sc0000317-1575043694:289026..289231Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:289501..289772TCONS_00019020-exon-sc0000317-1491911889:289501..289772Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:289501..289772TCONS_00019020-exon-sc0000317-1510915933:289501..289772Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:289501..289772TCONS_00019020-exon-sc0000317-1575043694:289501..289772Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:290284..291095TCONS_00019020-exon-sc0000317-1491911889:290284..291095Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:290284..291095TCONS_00019020-exon-sc0000317-1510915933:290284..291095Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:290284..291095TCONS_00019020-exon-sc0000317-1575043694:290284..291095Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:291614..292113TCONS_00019020-exon-sc0000317-1491911889:291614..292113Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:291614..292113TCONS_00019020-exon-sc0000317-1510915933:291614..292113Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:291614..292113TCONS_00019020-exon-sc0000317-1575043694:291614..292113Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1491911889:292173..292641TCONS_00019020-exon-sc0000317-1491911889:292173..292641Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1510915933:292173..292641TCONS_00019020-exon-sc0000317-1510915933:292173..292641Clytia hemisphaericaexon
TCONS_00019020-exon-sc0000317-1575043694:292173..292641TCONS_00019020-exon-sc0000317-1575043694:292173..292641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:283685..292641 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0609652	0	0	0.712691	0.667213	0.293246	1.04906e-07	0	0.264497	0.265731	0	0.353008	0.310887	2.03451e-10	0.464338	0	0.304149	1.80567	1.63005	0.601456	1.39054	0	0.183096	0	0	0	0.21811
Blast
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BLAST of TCONS_00019020 vs. Swiss-Prot (Human)
Match: EAA1 (Excitatory amino acid transporter 1 OS=Homo sapiens GN=SLC1A3 PE=1 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 1.089e-130
Identity = 249/489 (50.92%), Postives = 332/489 (67.89%), Query Frame = 2 
Query:  425 IIIGVCLGFLVGISCNKPIQNLDQPIRKNVLLILGFPGELLMRMLKMXXXXXXXXXXXXXXAELDQRASGRLGKRAVLYYMGTTMCXXXXXXXXXXXXYPG-GNKQEAEGEKEDKRVRPLDSFLDLIRNMFPDNLVKACIAQLVTGVKFEKHDERTTVWSSNETLADQMNWNHWEVNQTALQNQTNSEWKYLTYQSVLNGTNVTMVKEWREVKMPDKPSDKGSTNVLGLVVFSIVVXXXXXXXXXXXRVFVDWMIVLNDIVMELVGWVMWYSPIGIWSLISAKFASMNDIEGTFEKLALYMVTVIVGLIIHSFLVLPAIFAVVTRKNPFRFATGLIKALLTAFGTSSSSATLPVTFSCLEDNLRVDKRVTRFVLPIGATINMDGTALYEAVGAIFIAQNSGLDLDFGQYVAVSLTATLASIGAAGIPQAGLVTMLIVLQTIGLPEDAVTLILAVDWFLDRVRTTVNVLGDAYGAGIVHHLSQRELQQMD 1888
            +I+G  LGF +     +P +   + ++        FPGELLMRML+ML+LPLI+SSL+ G+A LD +ASG++G RAV+YYM TT+ AV++GII+V+ I+PG G K+    E +  RV   D+FLDLIRNMFP NLV+AC  Q  T   +EK   +  +  +NETL   +  N  E  +T                       +T + E    ++   P      N LGLVVFS+  G ++G M ++G+   ++   LN+ +M LV  +MWY+P+GI  LI+ K   M D+     +LA+Y VTVIVGL+IH+ +VLP ++ +VTRKNP+ F  GL++AL+TA GTSSSSATLP+TF CLE+N  VDKRVTRFVLP+GATINMDGTALYEA+ AIFIAQ +  +L+FGQ + +S+TAT ASIGAAGIPQAGLVTM+IVL ++GLP D +TLI+AVDWFLDR+RTT NVLGD+ GAGIV HLS+ EL+  D
Sbjct:   58 VIVGTILGFTL-----RPYRMSYREVK-----YFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMHREGKIVRVTAADAFLDLIRNMFPPNLVEACFKQFKT--NYEKRSFKVPI-QANETLVGAVINNVSEAMET-----------------------LTRITE----ELVPVPGSVNGVNALGLVVFSMCFGFVIGNMKEQGQALREFFDSLNEAIMRLVAVIMWYAPVGILFLIAGKIVEMEDMGVIGGQLAMYTVTVIVGLLIHAVIVLPLLYFLVTRKNPWVFIGGLLQALITALGTSSSSATLPITFKCLEENNGVDKRVTRFVLPVGATINMDGTALYEALAAIFIAQVNNFELNFGQIITISITATAASIGAAGIPQAGLVTMVIVLTSVGLPTDDITLIIAVDWFLDRLRTTTNVLGDSLGAGIVEHLSRHELKNRD 506
The following BLAST results are available for this feature:
BLAST of TCONS_00019020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EAA11.089e-13050.92Excitatory amino acid transporter 1 OS=Homo sapien... [more]
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