TCONS_00018985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018985
Unique NameTCONS_00018985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018985 ID=TCONS_00018985|Name=TCONS_00018985|organism=Clytia hemisphaerica|type=transcript|length=2608bp
cttgaagaaaaattgtatcaaaaaataattgatgTTTGATTTCAGAAAGA
ATCTTTACTGCGATTTTtatgtataataaatatttgatAATTTATAGGTC
CAAAAGGATAGTAaaaattcacaattttacaAATAAGAATTTCAAATCGC
TAAATGCGAAGGAAAAAATATATCTTAAAAAATCCCAAAGAATAGCAGAT
TATAAACCATATGAATAAAGCGAACAAGGATACCTCATGACTGAGCGAGT
CGCTTCAAATTGATTAGGTGTCGCATTGTGGGTCTTCCATGAGGACAGTT
CCAAGGATGTTCAATTTCACCCATATGTCGAAGAAGATTGACCATACTCT
GTTTGCTTAGAGCCGTGCCAACCATGATGGAAGTCCTGCAAGCTCTACTA
GCAAACATTTGCCGAACACGAGATGGTCTGTACGTTGTGCCTGATGAATC
TGATAATATAAAAATTAACTCTTCGACATCACTTGCTCCAAATACCCAAT
TTCTATGCACTGGTGTAGATATTATCTTAAGACAGCTCTCGTCTTTAATA
TCGAAACAAAaaccatttttcttgaaaatttctatATTATCTAGTAAAAC
GTGTTTTTGAACGGGTGTGATTTCTAACGGGATGGGTTGTATCAAGGTTT
GTGTCTTTAAGATATGTTTCTTTTGAAGGGTTTCAAAATTGTATTTCTCG
TCTGATGCATGCTGGTCTATTATGAAAAGATCATCATTCAACTTTGCTGT
GATGAAACCCAGGTTGAACTGACCAATAACGGTCATTTTGGAAAACATCT
CTTTGCTGACATGTCTCCTCAATTCCTCTTCTGCAGCACCGTTTTCTTGA
GCACTGATCTTGGCGCGGAAGGACGTTACAGCTCCTTCTTTTGCACTTTG
TTTCATGATCTTAGAAGCTGAAAGGATGGCCCTCTTTACTTTTTGAAGAT
TGAATGTTGTTTTTATTCGAGGACGTTTGGAAGCTGATGTTTCTCTTTTG
TCAACAATGATCTGTTTAGGGTTGACCGGGTCATCTTTTGTAATTTGACT
TTCAAGTTTTATGGGAGGAGTACATTGGATAGATTTGCTATCATCGTTTC
TTTCATaatcatcatttttatttgagCGAAATCTTTTCAGATGGACAGAA
TTCTCCACGTCGTCATCTTCAGGATGATCGATCGAGTCTAATGATCGTTT
GAGCGATGTATTTGAAGATGAGAAATAGTCACCAAGCTTTTGTTGTCTTG
TTATTACTTTCTCGTCGATCAATTCAGTAGAAGCGTTTGTGCTTTCTTTA
GCGTATTTGCAACGAAATTTTGCTAAAGGATTATGTGACAAACGTTTGGG
CTCGTCTTCCGTGTTGGGTGAAGCATTTCTGCCGTCATTGTTATTCCTCT
TTTGTGACTGATCCACAAACAGCGAGGCTTGCTGATCAAACATGCTTTTC
AAAGAGGTTTTGATGAGAGCGTACAAAACTTTTTCTTGCTGTAACATTAC
TTGCCGTTTATCAGGTGTGATGTTGACATCAACTAAATCTTTGTTGGTCA
AAATCTCCAAGAAGACAAAAGGGTATTGATTGTTATTATAGCGGTGATAC
ATTTCATTGACAATTTTGGAAGTTTTCTGGTGATCGCAAGGTCTGGTGTT
GACAAAATAGAACTGACGATCAGGAGCACTACGACCGAAGCCGTGAGTGA
CATTGGAAATGAAGCCACGAATATCAAACAAATCCTGGTAAGATGTCACA
AGGTTCATCGAAAGATTGTATTCCTCTGCTACATCCTCAGTAATGGGGTG
CTTTTGAAAGGcttcaattttctttgattgaGATATGCCAAACAGACTGA
TTATAACGTCTAGAGTCTTTTGGTTGCCCTTGGTGGAAGCAATGATAGTC
TTTTTCTTGTTCACAGTGTTGGTACATGTGAAACGAACGTTGGGATTGAC
AAGTGCATAAGCATAAATAATATGGCACAATTTAGTGAAATCTTTCTTAA
AATTCCTCTGAAATTCCTTATATCTCACTGGCAGAGTATGAAATAAATCA
GATACTGAAACAGTCGTTCCTCGTTCTCTGGCAGCTGGTGTTTGCGACAC
TAATTTCCCATTATGATCAAATTCCAGTTTATAACCAATAGGTGACGCTT
CGTTTTGTGTGGTGACGACAAGGTTACTGAGAGCAGACAACGAACTTAAT
GCTTCTCCTCGAAACCCGTAAGTATCTACAATAGTCAAATCACTGAATTG
ACGTAGTTTAGAAGTATGATGTTTCAACGCAAGACCTTCAAAATTATCCT
CAAGAATACCTGAGCCGTCATCAGACACTTCAATCAATTCTTTACCATGT
TCTTTTAAACGAATTTCGACATTGCAAGCATCAGCATCAAGACTGTTCTC
AACCAATTCTTTGACAGCTGTCCCTAAATCCAACACCACTTGTCCAGAGC
ATATCTTGTGAACTGAGGAAACGTCAATTTGTTGAATAGCTTGCAAACTC
ATTCttgattttaatttaattaCTTAGTTAGAATATAGTAAATCTTTCAT
CGCTAAAAATCAAATAAGATTCGAATACAAACAATTTTGCTTTTGAAGGA
TTTTAGTA
Run BLAST on NCBI

transcript from alignment at sc0000314:78870..81546-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018985 ID=TCONS_00018985|Name=TCONS_00018985|organism=Clytia hemisphaerica|type=transcript|length=2677bp|location=Sequence derived from alignment at sc0000314:78870..81546- (Clytia hemisphaerica)
CTTGAAGAAAAATTGTATCAAAAAATAATTGATGTTTGATTTCAGAAAGA
ATCTTTACTGCGATTTTTATGTATAATAAATATTTGATAATTTATAGGTC
CAAAAGGATAGTAAAAATTCACAATTTTACAAATAAGAATTTCAAATCGC
TAAATGCGAAGGAAAAAATATATCTTAAAAAATCCCAAAGAATAGCAGAT
TATAAACCATATGAATAAAGCGAACAAGGATACCTCATGACTGAGCGAGT
CGCTTCAAATTGATTAGGTGTCGCATTGTGGGTCTTCCATGAGGACAGTT
CCAAGGATGTTCAATTTCACCCATATGTCGAAGAAGATTGACCATACTCT
GTTTGCTTAGAGCCGTGCCAACCATGATGGAAGTCCTGCAAGCTCTACTA
GCAAACATTTGCCGAACACGAGATGGTCTGTACGTTGTGCCTGATGAATC
TGATAATATAAAAATTAACTCTTCGACATCACTTGCTCCAAATACCCAAT
TTCTATGCACTGGTGTAGATATTATCTTAAGACAGCTCTCGTCTTTAATA
TCGAAACAAAAACCATTTTTCTTGAAAATTTCTATATTATCTAGTAAAAC
GTGTTTTTGAACGGGTGTGATTTCTAACGGGATGGGTTGTATCAAGGTTT
GTGTCTTTAAGATATGTTTCTTTTGAAGGGTTTCAAAATTGTATTTCTCG
TCTGATGCATGCTGGTCTATTATGAAAAGATCATCATTCAACTTTGCTGT
GATGAAACCCAGGTTGAACTGACCAATAACGGTCATTTTGGAAAACATCT
CTTTGCTGACATGTCTCCTCAATTCCTCTTCTGCAGCACCGTTTTCTTGA
GCACTGATCTTGGCGCGGAAGGACGTTACAGCTCCTTCTTTTGCACTTTG
TTTCATGATCTTAGAAGCTGAAAGGATGGCCCTCTTTACTTTTTGAAGAT
TGAATGTTGTTTTTATTCGAGGACGTTTGGAAGCTGATGTTTCTCTTTTG
TCAACAATGATCTGTTTAGGGTTGACCGGGTCATCTTTTGTAATTTGACT
TTCAAGTTTTATGGGAGGAGTACATTGGATAGATTTGCTATCATCGTTTC
TTTCATAATCATCATTTTTATTTGAGCGAAATCTTTTCAGATGGACAGAA
TTCTCCACGTCGTCATCTTCAGGATGATCGATCGAGTCTAATGATCGTTT
GAGCGATGTATTTGAAGATGAGAAATAGTCACCAAGCTTTTGTTGTCTTG
TTATTACTTTCTCGTCGATCAATTCAGTAGAAGCGTTTGTGCTTTCTTTA
GCGTATTTGCAACGAAATTTTGCTAAAGGATTATGTGACAAACGTTTGGG
CTCGTCTTCCGTGTTGGGTGAAGCATTTCTGCCGTCATTGTTATTCCTCT
TTTGTGACTGATCCACAAACAGCGAGGCTTGCTGATCAAACATGCTTTTC
AAAGAGGTTTTGATGAGAGCGTACAAAACTTTTTCTTGCTGTAACATTAC
TTGCCGTTTATCAGGTGTGATGTTGACATCAACTAAATCTTTGTTGGTCA
AAATCTCCAAGAAGACAAAAGGGTATTGATTGTTATTATAGCGGTGATAC
ATTTCATTGACAATTTTGGAAGTTTTCTGGTGATCGCAAGGTCTGGTGTT
GACAAAATAGAACTGACGATCAGGAGCACTACGACCGAAGCCGTGAGTGA
CATTGGAAATGAAGCCACGAATATCAAACAAATCCTGGTAAGATGTCACA
AGGTTCATCGAAAGATTGTATTCCTCTGCTACATCCTCAGTAATGGGGTG
CTTTTGAAAGGCTTCAATTTTCTTTGATTGAGATATGCCAAACAGACTGA
TTATAACGTCTAGAGTCTTTTGGTTGCCCTTGGTGGAAGCAATGATAGTC
TTTTTCTTGTTCACAGTGTTGGTACATGTGAAACGAACGTTGGGATTGAC
AAGTGCATAAGCATAAATAATATGGCACAATTTAGTGAAATCTTTCTTAA
AATTCCTCTGAAATTCCTTATATCTCACTGGCAGAGTATGAAATAAATCA
GATACTGAAACAGTCGTTCCTCGTTCTCTGGCAGCTGGTGTTTGCGACAC
TAATTTCCCATTATGATCAAATTCCAGTTTATAACCAATAGGTGACGCTC
CGTTTTGTGTGGTGACGACAAGGTTACTGAGAGCNTCAAATTCCAGTTTA
TAACCAATAGGTGACGCTTCGTTTTGTGTGGTGACGACAAGGTTACTGAG
AGCAGACAACGAACTTAATGCTTCTCCTCGAAACCCGTAAGTATCTACAA
TAGTCAAATCACTGAATTGACGTAGTTTAGAAGTATGATGTTTCAACGCA
AGACCTTCAAAATTATCCTCAAGAATACCTGAGCCGTCATCAGACACTTC
AATCAATTCTTTACCATGTTCTTTTAAACGAATTTCGACATTGCAAGCAT
CAGCATCAAGACTGTTCTCAACCAATTCTTTGACAGCTGTCCCTAAATCC
AACACCACTTGTCCAGAGCATATCTTGTGAACTGAGGAAACGTCAATTTG
TTGAATAGCTTGCAAACTCATTCTTGATTTTAATTTAATTACTTAGTTAG
AATATAGTAAATCTTTCATCGCTAAAAATCAAATAAGATTCGAATACAAA
CAATTTTGCTTTTGAAGGATTTTAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010643XLOC_010643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018985-exon-sc0000314-1575043694:79406..81546TCONS_00018985-exon-sc0000314-1575043694:79406..81546Clytia hemisphaericaexon
TCONS_00018985-exon-sc0000314-1575043694:78870..79336TCONS_00018985-exon-sc0000314-1575043694:78870..79336Clytia hemisphaericaexon
TCONS_00018985-exon-sc0000314-1510915933:79406..81546TCONS_00018985-exon-sc0000314-1510915933:79406..81546Clytia hemisphaericaexon
TCONS_00018985-exon-sc0000314-1510915933:78870..79336TCONS_00018985-exon-sc0000314-1510915933:78870..79336Clytia hemisphaericaexon
TCONS_00018985-exon-sc0000314-1491911889:79406..81546TCONS_00018985-exon-sc0000314-1491911889:79406..81546Clytia hemisphaericaexon
TCONS_00018985-exon-sc0000314-1491911889:78870..79336TCONS_00018985-exon-sc0000314-1491911889:78870..79336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:78870..81546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24577	1.0432	1.27981	1.15167	3.55773	2.88753	3.25075	3.95335	1.45399	2.26696	1.65568	1.13816	1.75046	2.27738	2.39163	2.93967	3.40063	2.74542	1.58541	1.4208	1.8744	2.15253	5.19977	4.76016	3.76874	3.54954	0.662925	1.19319	4.12275	5.10904
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013507DNA_mismatch_repair_C
IPR014790MutL_C
IPR003594HATPase_C
IPR002099DNA_mismatch_repair_fam
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR014762DNA_mismatch_repair_CS
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
Blast
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BLAST of TCONS_00018985 vs. Swiss-Prot (Human)
Match: PMS2 (Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2)

HSP 1 Score: 391.349 bits (1004), Expect = 2.691e-121
Identity = 191/354 (53.95%), Postives = 266/354 (75.14%), Query Frame = -2 
Query: 1435 QAIQQIDVSSVHKICSGQVVLDLGTAVKELVENSLDADACNVEIRLKEHGKELIEVSDDGSGILEDNFEGLALKHHTSKLRQFSDLTIVDTYGFRGEXXXXXXXXXXLVVTTQNEASPIGYKLEFDHNGKLVSQTPAARERGTTVSVSDLFHTLPVRYKEFQRNFKKDFTKLCHIIYAYALVNPNVRFTCTNTVNK-KKTIIASTKGNQKTLDVIISLFGISQSKKIEAFQKHPITEDVAEEYNLSMNLVTSYQDLFDIRGFISNVTHGFGRSAPDRQFYFVNTRPCDHQKTSKIVNEMYHRYNNNQYPFVFLEILTNKDLVDVNITPDKRQVMLQQEKVLYALIKTSLKSMFD 2493
            +AI+ ID  SVH+ICSGQVVL L TAVKELVENSLDA A N++++LK++G +LIEVSD+G G+ E+NFEGL LKHHTSK+++F+DLT V+T+GFRGEALSSL ALS++ ++T + ++ +G +L FDHNGK++ +TP  R RGTTVSV  LF TLPVR+KEFQRN KK++ K+  +++AY +++  +R +CTN + + K+  +  T G+    + I S+FG  Q + +  F + P ++ V EEY LS +   +  +LF I GFIS  THG GRS+ DRQF+F+N RPCD  K  ++VNE+YH YN +QYPFV L I  + + VD+N+TPDKRQ++LQ+EK+L A++KTSL  MFD
Sbjct:   13 KAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCS--DALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364

HSP 2 Score: 286.96 bits (733), Expect = 7.572e-83
Identity = 133/242 (54.96%), Postives = 174/242 (71.90%), Query Frame = -2 
Query:  241 FNLQKVKRAILSASKIMKQSAKEGAVTSFRAKISAQENGAAEEELRRHVSKEMFSKMTVIGQFNLGFITAKLNDDLFIIDQHASDEKYNFETLQKKHILKTQTLIQPIPLEITPVQKHVLLDNIEIFKKNGFCFDIKDESCL----KIISTPVHRNWVFGASDVEELIFILSDSSGTTYRPSRVRQMFASRACRTSIMVGTALSKQSMVNLLRHMGEIEHPWNCPHGRPTMRHLINLKRLAQ 954
            F++  + + I       +QS  E     FRAKI   EN AAE+ELR+ +SK MF++M +IGQFNLGFI  KLN+D+FI+DQHA+DEKYNFE LQ+  +L+ Q LI P  L +T V + VL++N+EIF+KNGF F I + + +    K+IS P  +NW FG  DV+ELIF+LSDS G   RPSRV+QMFASRACR S+M+GTAL+   M  L+ HMGE++HPWNCPHGRPTMRH+ NL  ++Q
Sbjct:  620 FSMSSLAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAEDELRKEISKTMFAEMEIIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQHTVLQGQRLIAPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLISLPTSKNWTFGPQDVDELIFMLSDSPGVMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHIANLGVISQ 861
The following BLAST results are available for this feature:
BLAST of TCONS_00018985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PMS22.691e-12153.95Mismatch repair endonuclease PMS2 OS=Homo sapiens ... [more]
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